Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 5.1e-218 760.8 375 100.0
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 1.3e-202 709.5 375 91.5
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.6e-201 704.1 375 89.6
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.1e-200 702.2 375 89.1
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 2.1e-200 702.2 375 89.1
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 3.7e-200 701.4 375 89.1
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 6.2e-200 700.7 375 89.9
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 8.1e-200 700.3 375 89.6
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.1e-199 699.9 375 89.3
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 1.4e-199 699.5 375 89.1
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.8e-199 699.1 375 88.8
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 1.8e-199 699.1 375 89.6
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.4e-199 698.7 375 88.8
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 5.3e-199 697.6 375 88.8
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 5.3e-199 697.6 375 89.3
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 9.0e-199 696.8 375 88.8
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 1.2e-198 696.4 375 89.1
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 1.5e-198 696.0 375 89.1
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 2.0e-198 695.7 374 88.8
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 2.6e-198 695.3 375 88.3
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 3.4e-198 694.9 375 88.8
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 7.6e-198 693.7 375 88.5
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 7.6e-198 693.7 375 88.3
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 7.6e-198 693.7 375 88.3
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 9.9e-198 693.3 375 88.0
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 9.9e-198 693.3 375 88.8
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.3e-197 693.0 375 88.3
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 1.3e-197 693.0 375 87.5
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.3e-197 693.0 375 88.0
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 1.3e-197 693.0 375 88.3
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 1.3e-197 693.0 375 88.3
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.7e-197 692.6 375 88.3
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 1.7e-197 692.6 375 88.3
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 1.7e-197 692.6 375 88.8
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 2.2e-197 692.2 375 88.3
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 3.8e-197 691.4 375 88.5
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 3.8e-197 691.4 375 88.5
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 4.9e-197 691.0 375 87.7
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 6.4e-197 690.6 375 88.0
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 8.4e-197 690.3 375 86.4
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 1.1e-196 689.9 375 87.7
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 1.1e-196 689.9 375 88.3
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 1.1e-196 689.9 375 88.0
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.1e-196 689.9 375 87.7
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 1.9e-196 689.1 375 87.5
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.9e-196 689.1 375 87.7
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 2.4e-196 688.7 375 87.7
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 2.4e-196 688.7 375 87.2
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 4.2e-196 688.0 375 87.5
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 4.2e-196 688.0 375 87.5
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 4.2e-196 688.0 375 87.5
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 4.2e-196 688.0 375 87.7
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 1.2e-195 686.4 375 86.9
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.6e-195 686.0 375 87.5
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 2.7e-195 685.3 375 86.9
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 3.5e-195 684.9 375 87.5
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 3.5e-195 684.9 375 87.5
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 4.6e-195 684.5 375 87.7
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 4.6e-195 684.5 375 86.7
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 7.9e-195 683.7 375 87.5
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 1.0e-194 683.3 375 86.7
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 1.3e-194 682.9 375 87.2
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 1.8e-194 682.6 375 86.1
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 2.3e-194 682.2 375 86.7
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 2.3e-194 682.2 375 86.9
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 3.0e-194 681.8 375 86.9
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 3.9e-194 681.4 375 86.7
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 1.1e-193 679.9 375 85.9
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 1.5e-193 679.5 375 86.9
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.9e-193 679.1 375 86.1
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 3.3e-193 678.3 375 85.1
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 4.3e-193 677.9 375 85.9
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 4.3e-193 677.9 375 85.9
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 7.4e-193 677.2 375 86.9
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 7.4e-193 677.2 375 85.9
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 1.6e-192 676.0 375 85.9
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 2.1e-192 675.6 375 86.4
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 3.7e-192 674.9 375 85.6
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 3.7e-192 674.9 375 85.6
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 3.7e-192 674.9 375 85.6
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 3.7e-192 674.9 375 85.6
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 3.7e-192 674.9 375 85.6
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 6.2e-192 674.1 375 86.1
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 8.2e-192 673.7 375 85.1
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 8.2e-192 673.7 375 85.1
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 8.2e-192 673.7 375 85.3
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 8.2e-192 673.7 375 85.6
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 1.1e-191 673.3 389 83.0
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 1.4e-191 672.9 375 85.3
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 1.4e-191 672.9 375 84.5
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.8e-191 672.5 384 84.6
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 2.4e-191 672.2 375 85.3
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 2.4e-191 672.2 375 84.8
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 2.4e-191 672.2 375 84.8
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 2.4e-191 672.2 375 84.8
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 2.4e-191 672.2 375 85.3
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 3.1e-191 671.8 375 85.3
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 5.3e-191 671.0 375 84.5
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 5.3e-191 671.0 389 82.8
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 9.0e-191 670.2 375 85.1
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.0e-190 669.1 375 83.7
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 2.6e-190 668.7 375 84.5
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 3.4e-190 668.3 411 79.8
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 4.5e-190 667.9 390 83.1
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 1.3e-189 666.4 375 84.0
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 1.3e-189 666.4 375 83.7
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 2.9e-189 665.2 375 83.7
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 3.8e-189 664.8 375 83.5
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 1.9e-188 662.5 402 80.1
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 4.2e-188 661.4 375 82.9
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 2.1e-187 659.1 361 87.8
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 7.9e-187 657.1 375 83.2
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 7.4e-185 650.6 375 81.6
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 1.6e-184 649.4 375 84.0
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 6.3e-184 647.5 373 82.0
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 1.1e-183 646.7 375 83.2
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 1.1e-183 646.7 392 81.4
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.8e-183 646.0 375 82.7
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 1.2e-182 643.3 414 76.8
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 5.0e-181 637.9 376 81.4
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 3.6e-179 631.7 375 82.4
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 7.9e-179 630.6 375 80.5
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 2.2e-176 622.5 375 79.7
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 2.2e-176 622.5 375 78.4
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 3.1e-175 618.6 375 81.3
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.2e-174 616.7 334 88.0
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 2.0e-174 615.9 340 86.2
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 5.9e-174 614.4 375 78.4
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 1.8e-170 602.8 330 86.4
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 1.7e-168 596.3 333 84.4
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 1.2e-163 580.1 375 77.1
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 2.0e-161 572.8 375 70.9
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 9.7e-161 570.5 374 71.1
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 5.3e-159 564.7 375 70.1
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 5.0e-157 558.1 375 69.1
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 2.3e-154 549.3 375 73.3
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 5.2e-154 548.1 376 68.6
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 5.2e-154 548.1 376 68.9
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 2.9e-149 532.3 375 66.9
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.9e-148 529.6 375 66.7
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.5e-145 520.0 376 66.0
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 1.4e-138 496.9 365 70.4
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 4.5e-134 481.9 262 87.8
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 4.7e-131 471.9 375 65.3
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 3.2e-127 459.1 392 62.0
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 7.0e-127 458.0 259 83.0
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 1.3e-112 410.6 276 73.6
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 3.3e-108 396.0 373 51.7
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.9e-100 370.2 374 49.7
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 2.1e-94 350.1 213 80.3
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 1.0e-85 321.2 192 81.2
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 1.3e-83 314.3 192 80.7
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 6.2e-83 312.0 192 79.2
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 9.0e-82 308.1 300 52.3
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.7e-78 296.6 160 86.2
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 4.3e-60 236.1 140 81.4
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 2.1e-54 217.2 116 87.9
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 1.0e-32 145.2 86 80.2
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.6e-30 136.7 322 30.4
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.2e-25 121.7 335 25.7
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 5.0e-16 89.7 47 87.2
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 1.2e-12 78.6 66 59.1
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 2.9e-11 73.9 292 23.3


User provided reference genes

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