Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01037029001 Vitis vinifera HOM05D003004 ORTHO05D051429 7.6e-64 246.9 116 100.0
GSVIVG01000817001 Vitis vinifera HOM05D003004 ORTHO05D003860 7.4e-27 124.0 60 98.3
CiPaw.03G195600 Carya illinoinensis HOM05D003004 ORTHO05D003860 2.8e-26 122.1 59 98.3
Atru.chr6.3557 Acer truncatum HOM05D003004 ORTHO05D003860 6.3e-26 120.9 59 96.6
CSS0027416 Camellia sinensis var. sinensis HOM05D003004 ORTHO05D003860 6.3e-26 120.9 59 96.6
CAN.G486.13 Capsicum annuum HOM05D003004 ORTHO05D003860 6.3e-26 120.9 59 96.6
DCAR_009790 Daucus carota HOM05D003004 ORTHO05D003860 6.3e-26 120.9 59 96.6
Dinv26515 Davidia involucrata HOM05D003004 ORTHO05D003860 6.3e-26 120.9 59 96.6
Manes.01G129000 Manihot esculenta HOM05D003004 ORTHO05D003860 6.3e-26 120.9 59 96.6
Oeu026478.3 Olea europaea HOM05D003004 ORTHO05D003860 6.3e-26 120.9 59 96.6
PGSC0003DMG400007797 Solanum tuberosum HOM05D003004 ORTHO05D003860 6.3e-26 120.9 59 96.6
BolC8t51008H Brassica oleracea HOM05D003004 ORTHO05D003860 8.2e-26 120.6 74 82.4
Dinv12715 Davidia involucrata HOM05D003004 ORTHO05D003860 8.2e-26 120.6 59 94.9
PGR042G3476 Punica granatum HOM05D003004 ORTHO05D003860 8.2e-26 120.6 59 94.9
Sc12g0003790 Simmondsia chinensis HOM05D003004 ORTHO05D003860 8.2e-26 120.6 59 94.9
TWI14G0060 Tripterygium wilfordii HOM05D003004 ORTHO05D003860 8.2e-26 120.6 59 94.9
Ah.01g004780 Amaranthus hybridus HOM05D003004 ORTHO05D003860 1.1e-25 120.2 59 94.9
Nitab4.5_0010286g0010 Nicotiana tabacum HOM05D003004 ORTHO05D003860 1.1e-25 120.2 59 94.9
Peaxi162Scf00154g00814 Petunia axillaris HOM05D003004 ORTHO05D003860 1.1e-25 120.2 59 94.9
Peaxi162Scf00807g00038 Petunia axillaris HOM05D003004 ORTHO05D003860 1.1e-25 120.2 59 94.9
Solyc12g011000.2 Solanum lycopersicum HOM05D003004 ORTHO05D003860 1.1e-25 120.2 59 94.9
Sopen12g006360 Solanum pennellii HOM05D003004 ORTHO05D003860 1.1e-25 120.2 59 94.9
TAR627G0638 Trochodendron aralioides HOM05D003004 ORTHO05D003860 1.1e-25 120.2 59 96.6
ATR0213G001 Amborella trichopoda HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
AL4G41400 Arabidopsis lyrata HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
AT2G42790 Arabidopsis thaliana HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
BcaC07g40224 Brassica carinata HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
BcaC07g40293 Brassica carinata HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
A05p03250 Brassica napus HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
A09p51310 Brassica napus HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
C08p34090 Brassica napus HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
BolC4t22025H Brassica oleracea HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
BraA05t19314Z Brassica rapa HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
BraA09t40572Z Brassica rapa HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
Carub.0004s2523 Capsella rubella HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
Carub.0005s2554 Capsella rubella HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
Eucgr.A01955 Eucalyptus grandis HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
Thhalv10005906m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
FvH4_6g37750 Fragaria vesca HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
FAN05G0272 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
Potri.016G089300 Populus trichocarpa HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
QL08p043421 Quercus lobata HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
Sabra16G0095300 Salix brachista HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
Sp4g24910 Schrenkiella parvula HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
Sp5g04090 Schrenkiella parvula HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
THA.LOC104802267 Tarenaya hassleriana HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
THA.LOC104803095 Tarenaya hassleriana HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
TAR629G1040 Trochodendron aralioides HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
HPP92_006375 Vanilla planifolia HOM05D003004 ORTHO05D003860 1.4e-25 119.8 59 94.9
Aqoxy4G00197 Aquilegia oxysepala HOM05D003004 ORTHO05D003860 1.8e-25 119.4 59 93.2
Duzib147G1628 Durio zibethinus HOM05D003004 ORTHO05D003860 1.8e-25 119.4 59 94.9
Gohir.A11G059700 Gossypium hirsutum HOM05D003004 ORTHO05D003860 1.8e-25 119.4 76 78.9
Gohir.D11G063800 Gossypium hirsutum HOM05D003004 ORTHO05D003860 1.8e-25 119.4 76 78.9
Gorai.007G069000 Gossypium raimondii HOM05D003004 ORTHO05D003860 1.8e-25 119.4 76 78.9
Hund00825 Selenicereus undatus HOM05D003004 ORTHO05D003860 1.8e-25 119.4 59 93.2
Thecc.01G158700 Theobroma cacao HOM05D003004 ORTHO05D003860 1.8e-25 119.4 76 78.9
TAR626G0830 Trochodendron aralioides HOM05D003004 ORTHO05D003860 1.8e-25 119.4 59 94.9
AL5G40520 Arabidopsis lyrata HOM05D003004 ORTHO05D003860 2.4e-25 119.0 59 94.9
AT3G58750 Arabidopsis thaliana HOM05D003004 ORTHO05D003860 2.4e-25 119.0 59 94.9
CAN.G1481.12 Capsicum annuum HOM05D003004 ORTHO05D003860 2.4e-25 119.0 59 93.2
MD09G1156400 Malus domestica HOM05D003004 ORTHO05D003860 2.4e-25 119.0 59 94.9
MD17G1142900 Malus domestica HOM05D003004 ORTHO05D003860 2.4e-25 119.0 59 94.9
Nn3g21011 Nelumbo nucifera HOM05D003004 ORTHO05D003860 2.4e-25 119.0 59 93.2
Nitab4.5_0005521g0030 Nicotiana tabacum HOM05D003004 ORTHO05D003860 2.4e-25 119.0 59 93.2
SalBow7G3009 Salvia bowleyana HOM05D003004 ORTHO05D003860 2.4e-25 119.0 59 94.9
SalBow7G3774 Salvia bowleyana HOM05D003004 ORTHO05D003860 2.4e-25 119.0 59 94.9
Solyc07g055840.3 Solanum lycopersicum HOM05D003004 ORTHO05D003860 2.4e-25 119.0 59 93.2
Sopen07g029210 Solanum pennellii HOM05D003004 ORTHO05D003860 2.4e-25 119.0 59 93.2
SGA_v2.0_scaffold538G52785 Striga asiatica HOM05D003004 ORTHO05D003860 2.4e-25 119.0 59 93.2
SGA_v2.0_scaffold9G04895 Striga asiatica HOM05D003004 ORTHO05D003860 2.4e-25 119.0 59 93.2
Aqoxy1G01921 Aquilegia oxysepala HOM05D003004 ORTHO05D003860 3.1e-25 118.6 59 91.5
BolC6t37735H Brassica oleracea HOM05D003004 ORTHO05D003860 3.1e-25 118.6 62 90.3
CARHR169140 Cardamine hirsuta HOM05D003004 ORTHO05D003860 3.1e-25 118.6 59 93.2
Cc05_g09160 Coffea canephora HOM05D003004 ORTHO05D003860 3.1e-25 118.6 59 94.9
Thhalv10016536m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 3.1e-25 118.6 59 93.2
Lj1A586T32 Lonicera japonica HOM05D003004 ORTHO05D003860 3.1e-25 118.6 59 94.9
MBI07_g00476_MAGBIO Magnolia biondii HOM05D003004 ORTHO05D003860 3.1e-25 118.6 59 94.9
PSO170G1739 Papaver somniferum HOM05D003004 ORTHO05D003860 3.1e-25 118.6 59 91.5
PSO528G0280 Papaver somniferum HOM05D003004 ORTHO05D003860 3.1e-25 118.6 59 91.5
vmacro12432 Vaccinium macrocarpon HOM05D003004 ORTHO05D003860 3.1e-25 118.6 59 93.2
MSTRG.14300 Avicennia marina HOM05D003004 ORTHO05D003860 4.1e-25 118.2 59 93.2
Ciclev10014944m.g Citrus clementina HOM05D003004 ORTHO05D003860 4.1e-25 118.2 59 91.5
COL.COLO4_33706 Corchorus olitorius HOM05D003004 ORTHO05D003860 4.1e-25 118.2 59 93.2
Rhsim06G0122300 Rhododendron simsii HOM05D003004 ORTHO05D003860 4.1e-25 118.2 59 91.5
SalBow7G4649 Salvia bowleyana HOM05D003004 ORTHO05D003860 4.1e-25 118.2 59 93.2
C04p03890 Brassica napus HOM05D003004 ORTHO05D003860 5.3e-25 117.9 59 93.2
Haze_13470 Corylus avellana HOM05D003004 ORTHO05D003860 5.3e-25 117.9 59 94.9
ECA233G2966 Erigeron canadensis HOM05D003004 ORTHO05D003860 5.3e-25 117.9 59 93.2
HanXRQChr12g0367491 Helianthus annuus HOM05D003004 ORTHO05D003860 5.3e-25 117.9 59 93.2
HanXRQChr13g0386841 Helianthus annuus HOM05D003004 ORTHO05D003860 5.3e-25 117.9 59 93.2
Manes.02G086900 Manihot esculenta HOM05D003004 ORTHO05D003860 5.3e-25 117.9 59 94.9
Prupe.3G169400 Prunus persica HOM05D003004 ORTHO05D003860 5.3e-25 117.9 59 93.2
Sabra14G0107100 Salix brachista HOM05D003004 ORTHO05D003860 5.3e-25 117.9 59 93.2
Actinidia11186 Actinidia chinensis HOM05D003004 ORTHO05D003860 7.0e-25 117.5 59 93.2
EL10Ac9g21023 Beta vulgaris HOM05D003004 ORTHO05D003860 7.0e-25 117.5 59 91.5
A07p24330 Brassica napus HOM05D003004 ORTHO05D003860 7.0e-25 117.5 59 93.2
C06p25730 Brassica napus HOM05D003004 ORTHO05D003860 7.0e-25 117.5 59 93.2
BraA07t30079Z Brassica rapa HOM05D003004 ORTHO05D003860 7.0e-25 117.5 59 93.2
CARHR137870 Cardamine hirsuta HOM05D003004 ORTHO05D003860 7.0e-25 117.5 59 93.2
AUR62024005 Chenopodium quinoa HOM05D003004 ORTHO05D003860 7.0e-25 117.5 59 91.5
AUR62036394 Chenopodium quinoa HOM05D003004 ORTHO05D003860 7.0e-25 117.5 59 91.5
Potri.014G141900 Populus trichocarpa HOM05D003004 ORTHO05D003860 7.0e-25 117.5 59 91.5
BcaC07g40223 Brassica carinata HOM05D003004 ORTHO05D003860 9.1e-25 117.1 59 89.8
ClCG02G018250 Citrullus lanatus HOM05D003004 ORTHO05D003860 9.1e-25 117.1 59 91.5
Sed0013377 Sechium edule HOM05D003004 ORTHO05D003860 9.1e-25 117.1 59 91.5
unitig_746.g26658 Utricularia gibba HOM05D003004 ORTHO05D003860 9.1e-25 117.1 59 93.2
Aa31LG1G24550 Aethionema arabicum HOM05D003004 ORTHO05D003860 1.2e-24 116.7 59 91.5
Lsat_1_v5_gn_8_31881 Lactuca sativa HOM05D003004 ORTHO05D003860 1.2e-24 116.7 59 91.5
RcHm_v2.0_Chr2g0150811 Rosa chinensis HOM05D003004 ORTHO05D003860 1.2e-24 116.7 59 91.5
BcaB02g07501 Brassica carinata HOM05D003004 ORTHO05D003860 1.6e-24 116.3 59 91.5
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.6e-24 116.3 59 93.2
MELO3C019711.2 Cucumis melo HOM05D003004 ORTHO05D003860 1.6e-24 116.3 59 89.8
CsaV3_6G015630 Cucumis sativus L. HOM05D003004 ORTHO05D003860 1.6e-24 116.3 59 89.8
MBI06_g08524_MAGBIO Magnolia biondii HOM05D003004 ORTHO05D003860 1.6e-24 116.3 59 91.5
Cre03.g149100 Chlamydomonas reinhardtii HOM05D003004 ORTHO05D003860 2.0e-24 115.9 93 61.3
Pp3c23_9030 Physcomitrium patens HOM05D003004 ORTHO05D003860 2.0e-24 115.9 59 93.2
PGSC0003DMG400017338 Solanum tuberosum HOM05D003004 ORTHO05D003860 2.0e-24 115.9 59 91.5
THA.LOC104803170 Tarenaya hassleriana HOM05D003004 ORTHO05D051429 2.0e-24 115.9 59 91.5
AagrBONN_evm.TU.Sc2ySwM_368.567 Anthoceros agrestis HOM05D003004 ORTHO05D003860 3.5e-24 115.2 59 91.5
AL5G40510 Arabidopsis lyrata HOM05D003004 ORTHO05D003860 3.5e-24 115.2 59 88.1
Glyma.14G026400 Glycine max HOM05D003004 ORTHO05D003860 3.5e-24 115.2 59 88.1
Mapoly0091s0007 Marchantia polymorpha HOM05D003004 ORTHO05D003860 3.5e-24 115.2 60 88.3
Sed0011166 Sechium edule HOM05D003004 ORTHO05D003860 3.5e-24 115.2 59 88.1
Migut.M00216 Erythranthe guttata HOM05D003004 ORTHO05D003860 4.5e-24 114.8 59 89.8
Glyma.18G104400 Glycine max HOM05D003004 ORTHO05D003860 4.5e-24 114.8 59 88.1
Hma1.2p1_0178F.1_g078210 Hydrangea macrophylla HOM05D003004 ORTHO05D003860 4.5e-24 114.8 59 93.2
VMungo0540G1035 Vigna mungo HOM05D003004 ORTHO05D003860 4.5e-24 114.8 59 89.8
MSTRG.6769 Avicennia marina HOM05D003004 ORTHO05D003860 5.9e-24 114.4 59 89.8
CiPaw.04G135400 Carya illinoinensis HOM05D003004 ORTHO05D003860 5.9e-24 114.4 59 91.5
Glyma.08G311200 Glycine max HOM05D003004 ORTHO05D003860 5.9e-24 114.4 59 86.4
Pp3c12_7740 Physcomitrium patens HOM05D003004 ORTHO05D003860 5.9e-24 114.4 59 91.5
arahy.Tifrunner.gnm1.ann1.7JY60E Arachis hypogaea HOM05D003004 ORTHO05D003860 1.0e-23 113.6 59 86.4
arahy.Tifrunner.gnm1.ann1.7SJ9JV Arachis hypogaea HOM05D003004 ORTHO05D003860 1.0e-23 113.6 59 86.4
C08p34080 Brassica napus HOM05D003004 ORTHO05D003860 1.0e-23 113.6 59 88.1
BolC8t51005H Brassica oleracea HOM05D003004 ORTHO05D003860 1.0e-23 113.6 59 86.4
LjContig00310g0022930 Lotus japonicus HOM05D003004 ORTHO05D003860 1.0e-23 113.6 59 86.4
Os02g0232400 Oryza sativa ssp. japonica HOM05D003004 ORTHO05D003860 1.0e-23 113.6 59 88.1
VMungo0647G1404 Vigna mungo HOM05D003004 ORTHO05D003860 1.0e-23 113.6 59 86.4
A09p51290 Brassica napus HOM05D003004 ORTHO05D003860 1.3e-23 113.2 59 86.4
Phvul.006G035500 Phaseolus vulgaris HOM05D003004 ORTHO05D003860 1.3e-23 113.2 59 88.1
Mapoly0111s0039 Marchantia polymorpha HOM05D003004 ORTHO05D003860 1.7e-23 112.8 59 86.4
SMO367G0491 Selaginella moellendorffii HOM05D003004 ORTHO05D003860 1.7e-23 112.8 59 88.1
TPR.G12698 Trifolium pratense HOM05D003004 ORTHO05D003860 1.7e-23 112.8 91 62.6
Glyma.02G288500 Glycine max HOM05D003004 ORTHO05D003860 2.9e-23 112.1 59 84.7
Lj6g0001020 Lotus japonicus HOM05D003004 ORTHO05D003860 2.9e-23 112.1 59 84.7
Lalb_Chr04g0248661 Lupinus albus HOM05D003004 ORTHO05D003860 2.9e-23 112.1 59 84.7
Medtr3g048920 Medicago truncatula HOM05D003004 ORTHO05D003860 2.9e-23 112.1 59 84.7
Medtr5g091930 Medicago truncatula HOM05D003004 ORTHO05D003860 2.9e-23 112.1 59 84.7
TPR.G13562 Trifolium pratense HOM05D003004 ORTHO05D003860 2.9e-23 112.1 59 84.7
TPR.G20717 Trifolium pratense HOM05D003004 ORTHO05D003860 2.9e-23 112.1 59 84.7
Lalb_Chr10g0106821 Lupinus albus HOM05D003004 ORTHO05D003860 3.8e-23 111.7 59 84.7
Ca_06295_v3 Cicer arietinum L. HOM05D003004 ORTHO05D003860 5.0e-23 111.3 59 84.7
CARHR169120 Cardamine hirsuta HOM05D003004 ORTHO05D003860 8.5e-23 110.5 69 78.3
Zm00001eb239300 Zea mays HOM05D003004 ORTHO05D003860 8.5e-23 110.5 59 84.7
AT3G58740 Arabidopsis thaliana HOM05D003004 ORTHO05D003860 1.5e-22 109.8 59 86.4
Thhalv10006483m.g Eutrema salsugineum HOM05D003004 ORTHO05D003860 1.5e-22 109.8 59 84.7
Ca_14627_v3 Cicer arietinum L. HOM05D003004 ORTHO05D003860 3.2e-22 108.6 59 81.4
Ca_30924_v3 Cicer arietinum L. HOM05D003004 ORTHO05D003860 3.2e-22 108.6 59 81.4
arahy.Tifrunner.gnm1.ann1.H9U4YS Arachis hypogaea HOM05D003004 ORTHO05D003860 5.5e-22 107.8 59 79.7
C04p33750 Brassica napus HOM05D003004 ORTHO05D003860 5.5e-22 107.8 94 60.6
BolC4t24943H Brassica oleracea HOM05D003004 ORTHO05D003860 5.5e-22 107.8 94 60.6
Psat0s4248g0040 Pisum sativum HOM05D003004 ORTHO05D003860 5.5e-22 107.8 59 81.4
MCO05G529 Micromonas commoda HOM05D003004 ORTHO05D003860 7.2e-22 107.5 93 59.1
Sp5g04100 Schrenkiella parvula HOM05D003004 ORTHO05D003860 9.4e-22 107.1 58 87.9
A04p02380 Brassica napus HOM05D003004 ORTHO05D003860 1.6e-21 106.3 69 76.8
BraA04t15967Z Brassica rapa HOM05D003004 ORTHO05D003860 1.6e-21 106.3 69 76.8
CBR_g4482 Chara braunii HOM05D003004 ORTHO05D003860 1.6e-21 106.3 59 81.4
arahy.Tifrunner.gnm1.ann1.6YST69 Arachis hypogaea HOM05D003004 ORTHO05D003860 2.1e-21 105.9 59 78.0
BraA09t40571Z Brassica rapa HOM05D003004 ORTHO05D003860 2.1e-21 105.9 59 81.4
PRCOL_00002388 Prasinoderma coloniale HOM05D003004 ORTHO05D003860 2.1e-21 105.9 67 76.1
CARHR169130 Cardamine hirsuta HOM05D003004 ORTHO05D003860 1.0e-20 103.6 69 72.5
CDE10G1091 Ceratophyllum demersum HOM05D003004 ORTHO05D003860 1.2e-19 100.1 50 94.0
Sp5g04110 Schrenkiella parvula HOM05D003004 ORTHO05D003860 3.7e-18 95.1 61 82.0
CSS0034735 Camellia sinensis var. sinensis HOM05D003004 ORTHO05D003860 1.6e-16 89.7 59 76.3
C08p34070 Brassica napus HOM05D003004 ORTHO05D003860 1.0e-12 77.0 38 89.5
SMO115G0153 Selaginella moellendorffii HOM05D003004 ORTHO05D003860 3.4e-11 72.0 58 58.6
A05p03320 Brassica napus HOM05D003004 ORTHO05D003860 3.7e-10 68.6 34 91.2
Oeu020938.2 Olea europaea HOM05D003004 ORTHO05D049475 3.7e-10 68.6 34 91.2
SMO115G0146 Selaginella moellendorffii HOM05D003004 ORTHO05D003860 2.0e-08 62.8 57 52.6
Haze_26743 Corylus avellana HOM05D003004 ORTHO05D028858 1.7e-07 59.7 76 36.8
GSVIVG01036092001 Vitis vinifera HOM05D001390 ORTHO05D018488 3.3e-06 55.5 29 93.1
PRCOL_00005692 Prasinoderma coloniale HOM05D003004 ORTHO05D028858 7.2e-06 54.3 56 39.3


User provided reference genes

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