Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.7e-97 359.4 188 100.0
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 5.9e-90 334.3 209 86.6
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 1.4e-46 190.3 203 60.1
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 2.3e-46 189.5 196 62.8
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 3.1e-46 189.1 196 62.2
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 1.2e-45 187.2 207 57.0
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 5.8e-45 184.9 206 56.8
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.2e-44 183.0 207 57.0
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 8.3e-44 181.0 224 54.9
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.1e-43 180.6 208 56.7
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.4e-43 180.3 195 59.5
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.4e-43 180.3 196 59.7
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 3.2e-43 179.1 194 58.8
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 2.7e-42 176.0 207 54.1
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 3.5e-42 175.6 208 54.8
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 4.6e-42 175.3 227 52.4
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.7e-41 173.3 204 58.8
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 2.3e-41 172.9 181 60.8
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.9e-40 169.9 202 55.0
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 5.6e-40 168.3 201 56.7
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 9.5e-40 167.5 233 49.8
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.2e-39 167.2 209 53.1
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 2.1e-39 166.4 200 55.5
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 8.1e-39 164.5 214 55.6
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.4e-38 163.7 189 52.9
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.4e-38 163.7 210 52.9
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.4e-38 163.7 200 54.5
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 2.3e-38 162.9 191 52.9
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 2.3e-38 162.9 195 53.8
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 3.1e-38 162.5 201 51.7
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 4.0e-38 162.2 125 71.2
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 4.0e-38 162.2 198 56.6
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 6.8e-38 161.4 208 52.4
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 8.9e-38 161.0 197 55.3
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 2.0e-37 159.8 209 53.1
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 5.8e-37 158.3 200 53.5
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 7.5e-37 157.9 190 52.1
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 9.9e-37 157.5 191 53.4
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 2.9e-36 156.0 203 54.2
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 3.7e-36 155.6 195 53.3
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 3.7e-36 155.6 199 51.3
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 3.7e-36 155.6 199 51.8
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 4.9e-36 155.2 191 51.3
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 8.3e-36 154.5 164 59.1
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 1.9e-35 153.3 208 53.4
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 3.2e-35 152.5 140 64.3
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 4.1e-35 152.1 142 62.7
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 4.1e-35 152.1 203 50.2
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 4.1e-35 152.1 201 53.2
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 5.4e-35 151.8 191 51.3
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 7.1e-35 151.4 186 52.7
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 7.1e-35 151.4 198 48.0
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 9.2e-35 151.0 197 49.2
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.6e-34 150.2 133 63.9
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 1.6e-34 150.2 187 51.9
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 2.1e-34 149.8 174 54.0
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 6.0e-34 148.3 148 59.5
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 6.0e-34 148.3 211 50.2
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 1.0e-33 147.5 164 57.3
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 1.0e-33 147.5 207 49.3
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 1.3e-33 147.1 172 55.2
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 2.3e-33 146.4 145 62.8
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 3.0e-33 146.0 201 50.7
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 3.0e-33 146.0 203 51.7
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 3.9e-33 145.6 197 49.2
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 3.9e-33 145.6 192 49.0
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 8.6e-33 144.4 127 65.4
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.5e-32 143.7 200 50.0
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 1.5e-32 143.7 203 49.3
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.9e-32 143.3 199 51.8
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 2.5e-32 142.9 140 59.3
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 4.3e-32 142.1 193 47.7
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 4.3e-32 142.1 196 48.0
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 9.5e-32 141.0 211 48.8
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 1.2e-31 140.6 191 51.8
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 2.1e-31 139.8 192 52.1
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 2.1e-31 139.8 204 47.5
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 3.6e-31 139.0 186 48.9
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 3.6e-31 139.0 192 50.0
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 3.6e-31 139.0 183 50.3
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 6.2e-31 138.3 192 50.5
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 1.1e-30 137.5 222 45.9
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 2.4e-30 136.3 211 43.6
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 3.1e-30 136.0 161 50.9
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 5.2e-30 135.2 186 51.1
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 4.4e-29 132.1 203 46.3
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 5.8e-29 131.7 136 57.4
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 7.6e-29 131.3 183 49.2
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 1.3e-28 130.6 194 49.5
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 6.4e-28 128.3 204 45.6
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.1e-27 127.5 191 48.7
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 3.2e-27 125.9 206 47.6
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 4.1e-27 125.6 211 46.0
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 5.4e-27 125.2 221 44.3
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 9.2e-27 124.4 199 48.7
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 9.2e-27 124.4 194 46.4
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.2e-26 124.0 199 46.2
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 1.6e-26 123.6 126 57.9
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.7e-26 122.9 198 47.5
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 2.7e-26 122.9 209 46.4
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 6.0e-26 121.7 179 48.6
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 6.0e-26 121.7 204 46.6
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 1.3e-25 120.6 188 42.6
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 3.9e-25 119.0 183 47.0
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 6.6e-25 118.2 144 56.2
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 1.1e-24 117.5 151 49.0
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 1.1e-24 117.5 118 61.0
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 1.5e-24 117.1 96 65.6
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.5e-24 117.1 153 52.3
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 3.3e-24 115.9 157 50.3
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 9.6e-24 114.4 167 44.9
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 9.6e-24 114.4 167 44.9
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 2.8e-23 112.8 195 44.6
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 3.6e-23 112.5 132 53.8
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 3.6e-23 112.5 167 45.5
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 4.7e-23 112.1 185 42.2
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 4.7e-23 112.1 185 42.2
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 4.7e-23 112.1 185 42.2
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 4.7e-23 112.1 175 41.1
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 1.4e-22 110.5 193 43.0
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 1.4e-22 110.5 193 43.0
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.8e-22 110.2 185 43.2
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 1.8e-22 110.2 193 43.0
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 2.4e-22 109.8 167 44.9
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 6.9e-22 108.2 122 51.6
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 4.4e-21 105.5 150 48.0
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.3e-20 104.0 96 64.6
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 2.2e-20 103.2 122 49.2
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 3.8e-20 102.4 182 40.7
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 6.4e-20 101.7 123 48.8
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 6.4e-20 101.7 123 48.8
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 1.4e-19 100.5 125 48.0
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 3.2e-19 99.4 107 57.9
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 9.3e-19 97.8 126 46.8
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 1.6e-18 97.1 211 39.3
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 1.6e-18 97.1 244 36.9
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 6.0e-18 95.1 140 47.1
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.1e-16 90.9 206 38.3
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 1.1e-16 90.9 106 53.8
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 2.5e-16 89.7 145 42.8
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.8e-14 83.6 62 71.0
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 1.8e-14 83.6 61 72.1
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 9.9e-13 77.8 85 56.5
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 6.4e-12 75.1 166 39.8
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.9e-11 73.6 132 39.4
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.1e-10 70.1 48 75.0
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 7.9e-10 68.2 107 43.9
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.0e-09 67.8 111 44.1
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 5.1e-09 65.5 53 62.3
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 7.4e-08 61.6 93 40.9
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 9.6e-08 61.2 135 37.0


User provided reference genes

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