Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01036995001 Vitis vinifera HOM05D000043 ORTHO05D002888 5.0e-47 190.7 89 100.0
Dinv16058 Davidia involucrata HOM05D000043 ORTHO05D002888 5.9e-24 114.0 99 59.6
GSVIVG01036992001 Vitis vinifera HOM05D000043 ORTHO05D002888 1.9e-22 109.0 47 100.0
Solyc01g106590.4 Solanum lycopersicum HOM05D000043 ORTHO05D002888 4.7e-21 104.4 48 89.6
Nitab4.5_0001477g0060 Nicotiana tabacum HOM05D000043 ORTHO05D002888 1.4e-20 102.8 48 87.5
Peaxi162Scf00016g03349 Petunia axillaris HOM05D000043 ORTHO05D002888 1.4e-20 102.8 48 87.5
PGSC0003DMG400005107 Solanum tuberosum HOM05D000043 ORTHO05D002888 1.4e-20 102.8 48 87.5
SGA_v2.0_scaffold342G49425 Striga asiatica HOM05D000043 ORTHO05D002888 1.4e-20 102.8 48 85.4
MD10G1114100 Malus domestica HOM05D000337 ORTHO05D002888 1.8e-20 102.4 48 91.7
QL11p027847 Quercus lobata HOM05D000043 ORTHO05D002888 1.8e-20 102.4 48 85.4
TWI59G1125 Tripterygium wilfordii HOM05D000043 ORTHO05D002888 2.3e-20 102.1 48 85.4
CAN.G504.28 Capsicum annuum HOM05D000043 ORTHO05D002888 3.0e-20 101.7 48 85.4
Cfa004749 Carpinus fangiana HOM05D000043 ORTHO05D002888 3.0e-20 101.7 48 87.5
HanXRQChr03g0069161 Helianthus annuus HOM05D000043 ORTHO05D002888 3.0e-20 101.7 48 87.5
Nitab4.5_0012245g0030 Nicotiana tabacum HOM05D000043 ORTHO05D002888 3.0e-20 101.7 48 85.4
Haze_10345 Corylus avellana HOM05D000043 ORTHO05D002888 4.0e-20 101.3 48 85.4
Potri.009G082500 Populus trichocarpa HOM05D000043 ORTHO05D002888 4.0e-20 101.3 48 85.4
Sopen01g048940 Solanum pennellii HOM05D000043 ORTHO05D002888 5.2e-20 100.9 48 85.4
Nn3g21380 Nelumbo nucifera HOM05D000043 ORTHO05D002888 6.8e-20 100.5 48 85.4
Sabra09G0064000 Salix brachista HOM05D000043 ORTHO05D002888 8.8e-20 100.1 48 83.3
PSO541G0633 Papaver somniferum HOM05D000337 ORTHO05D002888 1.2e-19 99.8 48 85.4
Atru.chr5.2193 Acer truncatum HOM05D000043 ORTHO05D002888 1.5e-19 99.4 48 83.3
Migut.B00493 Erythranthe guttata HOM05D000043 ORTHO05D002888 1.5e-19 99.4 48 81.2
CiPaw.05G023400 Carya illinoinensis HOM05D000043 ORTHO05D002888 2.0e-19 99.0 51 80.4
Prupe.8G155600 Prunus persica HOM05D000043 ORTHO05D002888 2.6e-19 98.6 48 87.5
CSS0011938 Camellia sinensis var. sinensis HOM05D000043 ORTHO05D002888 3.4e-19 98.2 48 85.4
PSO675G0701 Papaver somniferum HOM05D000043 ORTHO05D002888 4.4e-19 97.8 48 83.3
Manes.10G089600 Manihot esculenta HOM05D000043 ORTHO05D002888 5.7e-19 97.4 47 85.1
Os07g0498900 Oryza sativa ssp. japonica HOM05D000337 ORTHO05D002888 5.7e-19 97.4 48 83.3
TAR376G1134 Trochodendron aralioides HOM05D000043 ORTHO05D002888 5.7e-19 97.4 48 83.3
Actinidia28006 Actinidia chinensis HOM05D000043 ORTHO05D002888 7.5e-19 97.1 48 83.3
Thecc.02G033600 Theobroma cacao HOM05D000043 ORTHO05D002888 9.8e-19 96.7 48 81.2
TAR628G0254 Trochodendron aralioides HOM05D000043 ORTHO05D002888 9.8e-19 96.7 48 83.3
CiPaw.10G135100 Carya illinoinensis HOM05D000043 ORTHO05D002888 1.3e-18 96.3 48 79.2
arahy.Tifrunner.gnm1.ann1.ADXI1E Arachis hypogaea HOM05D000043 ORTHO05D002888 1.7e-18 95.9 48 79.2
arahy.Tifrunner.gnm1.ann1.BHC7EV Arachis hypogaea HOM05D000043 ORTHO05D002888 1.7e-18 95.9 48 79.2
MBI16_g09814_MAGBIO Magnolia biondii HOM05D000043 ORTHO05D002888 1.7e-18 95.9 47 80.9
Oeu005729.1 Olea europaea HOM05D000043 ORTHO05D002888 1.7e-18 95.9 48 81.2
CDE07G1437 Ceratophyllum demersum HOM05D000043 ORTHO05D002888 2.2e-18 95.5 48 79.2
ECA240G0408 Erigeron canadensis HOM05D000043 ORTHO05D002888 2.2e-18 95.5 48 79.2
PGR042G0588 Punica granatum HOM05D000043 ORTHO05D002888 2.2e-18 95.5 48 83.3
vmacro01924 Vaccinium macrocarpon HOM05D000043 ORTHO05D002888 2.2e-18 95.5 49 81.6
MSTRG.16659 Avicennia marina HOM05D000043 ORTHO05D002888 2.8e-18 95.1 48 81.2
Cc02_g20320 Coffea canephora HOM05D000217 ORTHO05D002888 2.8e-18 95.1 48 81.2
Duzib052G0327 Durio zibethinus HOM05D000043 ORTHO05D002888 3.7e-18 94.7 48 79.2
Aqoxy1G00356 Aquilegia oxysepala HOM05D000043 ORTHO05D002888 4.8e-18 94.4 48 85.4
CANSAT35G1147 Cannabis sativa HOM05D000043 ORTHO05D002888 4.8e-18 94.4 48 81.2
Duzib132G0173 Durio zibethinus HOM05D000043 ORTHO05D002888 4.8e-18 94.4 48 79.2
Gohir.D01G170700 Gossypium hirsutum HOM05D000043 ORTHO05D002888 4.8e-18 94.4 47 80.9
CsaV3_4G014560 Cucumis sativus L. HOM05D000043 ORTHO05D002888 6.3e-18 94.0 47 78.7
FvH4_2g02780 Fragaria vesca HOM05D000043 ORTHO05D002888 6.3e-18 94.0 48 83.3
FAN15G0500 Fragaria x ananassa HOM05D000043 ORTHO05D002888 6.3e-18 94.0 48 83.3
FAN20G1649 Fragaria x ananassa HOM05D000043 ORTHO05D002888 6.3e-18 94.0 48 83.3
FAN24G1857 Fragaria x ananassa HOM05D000043 ORTHO05D002888 6.3e-18 94.0 48 83.3
FAN27G1760 Fragaria x ananassa HOM05D000043 ORTHO05D002888 6.3e-18 94.0 48 83.3
Gohir.A04G128600 Gossypium hirsutum HOM05D000043 ORTHO05D002888 6.3e-18 94.0 48 77.1
MD05G1110600 Malus domestica HOM05D000043 ORTHO05D002888 6.3e-18 94.0 46 89.1
TWI23G0177 Tripterygium wilfordii HOM05D000043 ORTHO05D002888 6.3e-18 94.0 48 79.2
Zm00001eb105390 Zea mays HOM05D000043 ORTHO05D002888 6.3e-18 94.0 48 81.2
Ciclev10028513m.g Citrus clementina HOM05D000337 ORTHO05D002888 8.3e-18 93.6 48 79.2
CARHR105220 Cardamine hirsuta HOM05D000043 ORTHO05D002888 1.1e-17 93.2 48 79.2
Hund04815 Selenicereus undatus HOM05D000337 ORTHO05D002888 1.1e-17 93.2 48 75.0
SEGI_02627 Sequoiadendron giganteum HOM05D000043 ORTHO05D002888 1.1e-17 93.2 47 78.7
THA.LOC104807197 Tarenaya hassleriana HOM05D000043 ORTHO05D002888 1.4e-17 92.8 48 75.0
Cpa.g.sc20.76 Carica papaya HOM05D000043 ORTHO05D002888 1.8e-17 92.4 48 77.1
Gohir.A01G179900 Gossypium hirsutum HOM05D000043 ORTHO05D002888 1.8e-17 92.4 47 78.7
Gohir.D13G167222 Gossypium hirsutum HOM05D000043 ORTHO05D002888 1.8e-17 92.4 47 78.7
RcHm_v2.0_Chr6g0247271 Rosa chinensis HOM05D000043 ORTHO05D002888 1.8e-17 92.4 48 81.2
Sc13g0006820 Simmondsia chinensis HOM05D000043 ORTHO05D002888 1.8e-17 92.4 48 77.1
COL.COLO4_17819 Corchorus olitorius HOM05D000043 ORTHO05D002888 2.4e-17 92.0 48 77.1
Lsat_1_v5_gn_9_112620 Lactuca sativa HOM05D000043 ORTHO05D002888 2.4e-17 92.0 48 75.0
Lj5C223T7 Lonicera japonica HOM05D000043 ORTHO05D002888 2.4e-17 92.0 48 72.9
Sp3g27730 Schrenkiella parvula HOM05D000043 ORTHO05D002888 2.4e-17 92.0 48 75.0
Aa31LG8G12750 Aethionema arabicum HOM05D000337 ORTHO05D002888 3.1e-17 91.7 48 75.0
Ca_20756_v3 Cicer arietinum L. HOM05D000043 ORTHO05D002888 3.1e-17 91.7 48 77.1
COL.COLO4_17816 Corchorus olitorius HOM05D000043 ORTHO05D002888 3.1e-17 91.7 48 77.1
Psat1g064240 Pisum sativum HOM05D000043 ORTHO05D002888 3.1e-17 91.7 48 75.0
Gohir.D04G173000 Gossypium hirsutum HOM05D000043 ORTHO05D002888 4.1e-17 91.3 48 75.0
Gorai.N026200 Gossypium raimondii HOM05D000043 ORTHO05D002888 4.1e-17 91.3 48 75.0
Lalb_Chr09g0327081 Lupinus albus HOM05D000043 ORTHO05D002888 4.1e-17 91.3 51 70.6
Sed0019918 Sechium edule HOM05D000043 ORTHO05D002888 4.1e-17 91.3 47 76.6
Eucgr.G01129 Eucalyptus grandis HOM05D000043 ORTHO05D002888 5.4e-17 90.9 48 77.1
Rhsim05G0093900 Rhododendron simsii HOM05D000043 ORTHO05D002888 5.4e-17 90.9 48 75.0
Sed0023342 Sechium edule HOM05D000043 ORTHO05D002888 5.4e-17 90.9 47 76.6
BcaB08g34555 Brassica carinata HOM05D000043 ORTHO05D002888 7.0e-17 90.5 48 70.8
DCAR_021929 Daucus carota HOM05D000217 ORTHO05D002888 7.0e-17 90.5 47 78.7
AL3G46080 Arabidopsis lyrata HOM05D000043 ORTHO05D002888 9.1e-17 90.1 48 77.1
Medtr6g016240 Medicago truncatula HOM05D000043 ORTHO05D002888 9.1e-17 90.1 48 77.1
AT2G14530 Arabidopsis thaliana HOM05D000043 ORTHO05D002888 1.2e-16 89.7 48 77.1
Carub.0003s2852 Capsella rubella HOM05D000043 ORTHO05D002888 1.2e-16 89.7 48 75.0
MELO3C018035.2 Cucumis melo HOM05D000043 ORTHO05D002888 1.2e-16 89.7 47 74.5
RcHm_v2.0_Chr6g0247241 Rosa chinensis HOM05D000043 ORTHO05D002888 1.2e-16 89.7 48 77.1
unitig_21.g20712 Utricularia gibba HOM05D000043 ORTHO05D002888 1.2e-16 89.7 48 72.9
AUR62031457 Chenopodium quinoa HOM05D000043 ORTHO05D002888 1.6e-16 89.4 48 68.8
EL10Ac3g05374 Beta vulgaris HOM05D000043 ORTHO05D002888 2.0e-16 89.0 48 68.8
Oeu008564.1 Olea europaea HOM05D000043 ORTHO05D002888 2.0e-16 89.0 48 75.0
Phvul.002G217300 Phaseolus vulgaris HOM05D000043 ORTHO05D002888 3.5e-16 88.2 47 76.6
HPP92_014196 Vanilla planifolia HOM05D000337 ORTHO05D002888 3.5e-16 88.2 48 70.8
BcaC01g03097 Brassica carinata HOM05D000043 ORTHO05D002888 4.5e-16 87.8 48 68.8
C03p56060 Brassica napus HOM05D000043 ORTHO05D002888 4.5e-16 87.8 48 68.8
BraA03t13655Z Brassica rapa HOM05D000043 ORTHO05D002888 4.5e-16 87.8 47 72.3
Gohir.D04G173164 Gossypium hirsutum HOM05D000043 ORTHO05D002888 4.5e-16 87.8 45 77.8
Gohir.D04G173200 Gossypium hirsutum HOM05D000043 ORTHO05D002888 4.5e-16 87.8 45 77.8
Gorai.012G163100 Gossypium raimondii HOM05D000043 ORTHO05D002888 4.5e-16 87.8 45 77.8
A03p45200 Brassica napus HOM05D000043 ORTHO05D002888 5.9e-16 87.4 47 70.2
Thhalv10022706m.g Eutrema salsugineum HOM05D000043 ORTHO05D002888 7.7e-16 87.0 48 70.8
VMungo0251G1759 Vigna mungo HOM05D000043 ORTHO05D002888 7.7e-16 87.0 47 74.5
AUR62021074 Chenopodium quinoa HOM05D000043 ORTHO05D002888 1.0e-15 86.7 48 66.7
Lj4g0004627 Lotus japonicus HOM05D000043 ORTHO05D002888 1.7e-15 85.9 48 70.8
SalBow6G2370 Salvia bowleyana HOM05D000043 ORTHO05D002888 1.7e-15 85.9 48 75.0
ATR0706G274 Amborella trichopoda HOM05D000337 ORTHO05D002888 8.6e-15 83.6 47 72.3
Rhsim05G0204300 Rhododendron simsii HOM05D000043 ORTHO05D002888 1.5e-14 82.8 49 69.4
SalBow6G4080 Salvia bowleyana HOM05D000043 ORTHO05D002888 2.5e-14 82.0 47 74.5
Rhsim11G0147600 Rhododendron simsii HOM05D000003 ORTHO05D000007 3.3e-14 81.6 49 69.4
ClCG10G009880 Citrullus lanatus HOM05D000043 ORTHO05D002888 4.2e-14 81.3 42 76.2
Glyma.07G185900 Glycine max HOM05D000337 ORTHO05D002888 4.2e-14 81.3 47 70.2
SMO361G0283 Selaginella moellendorffii HOM05D000043 ORTHO05D002888 5.5e-14 80.9 80 46.2
SMO361G0642 Selaginella moellendorffii HOM05D000043 ORTHO05D002888 5.5e-14 80.9 80 46.2
HPP92_026452 Vanilla planifolia HOM05D000337 ORTHO05D002888 1.2e-13 79.7 41 75.6
Rhsim11G0147800 Rhododendron simsii HOM05D000043 ORTHO05D002888 3.0e-12 75.1 48 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3668 Anthoceros agrestis HOM05D000043 ORTHO05D002888 4.4e-11 71.2 48 58.3
AagrBONN_evm.TU.Sc2ySwM_344.3775 Anthoceros agrestis HOM05D000043 ORTHO05D002888 2.7e-08 62.0 46 52.2
Ciclev10030133m.g Citrus clementina HOM05D000043 ORTHO05D002888 1.0e-07 60.1 37 67.6
SMO358G0583 Selaginella moellendorffii HOM05D000043 ORTHO05D002888 1.5e-06 56.2 40 55.0
CDE01G0583 Ceratophyllum demersum HOM05D000043 ORTHO05D002888 2.5e-06 55.5 52 46.2
Lsat_1_v5_gn_7_83160 Lactuca sativa HOM05D000043 ORTHO05D002888 3.3e-06 55.1 34 61.8
Os02g0117900 Oryza sativa ssp. japonica HOM05D000043 ORTHO05D002888 3.3e-06 55.1 47 48.9
MD10G1057700 Malus domestica HOM05D000043 ORTHO05D002888 4.3e-06 54.7 52 46.2
SalBow6G7053 Salvia bowleyana HOM05D000043 ORTHO05D002888 4.3e-06 54.7 52 48.1
TAR376G0145 Trochodendron aralioides HOM05D000043 ORTHO05D002888 4.3e-06 54.7 34 58.8
CSS0022705 Camellia sinensis var. sinensis HOM05D000043 ORTHO05D002888 5.6e-06 54.3 52 44.2
Manes.10G092300 Manihot esculenta HOM05D000043 ORTHO05D002888 5.6e-06 54.3 50 48.0
Nitab4.5_0009020g0040 Nicotiana tabacum HOM05D000043 ORTHO05D002888 5.6e-06 54.3 34 61.8
PSO675G3113 Papaver somniferum HOM05D000043 ORTHO05D002888 5.6e-06 54.3 34 55.9
BcaC01g02684 Brassica carinata HOM05D000043 ORTHO05D002888 7.3e-06 53.9 53 43.4
C03p61770 Brassica napus HOM05D000043 ORTHO05D002888 7.3e-06 53.9 53 43.4
Hma1.2p1_0435F.1_g152550 Hydrangea macrophylla HOM05D000043 ORTHO05D002888 7.3e-06 53.9 34 61.8
Lalb_Chr09g0327021 Lupinus albus HOM05D000043 ORTHO05D002888 7.3e-06 53.9 52 44.2
Pp3c5_14230 Physcomitrium patens HOM05D000043 ORTHO05D002888 7.3e-06 53.9 34 55.9
Aa31LG1G17440 Aethionema arabicum HOM05D000043 ORTHO05D002888 9.5e-06 53.5 50 42.0
Rhsim05G0095300 Rhododendron simsii HOM05D000043 ORTHO05D002888 9.5e-06 53.5 34 58.8
TAR625G0062 Trochodendron aralioides HOM05D000043 ORTHO05D002888 9.5e-06 53.5 34 58.8


User provided reference genes

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