Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 4.3e-27 124.0 67 100.0
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 2.6e-16 88.2 67 70.1
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 7.6e-16 86.7 63 73.0
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 7.6e-16 86.7 67 67.2
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 1.7e-15 85.5 64 71.9
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 1.7e-15 85.5 64 71.9
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 3.8e-15 84.3 64 70.3
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 3.8e-15 84.3 64 70.3
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 4.9e-15 84.0 64 70.3
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 6.4e-15 83.6 64 70.3
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 6.4e-15 83.6 64 70.3
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 8.4e-15 83.2 61 72.1
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 1.4e-14 82.4 64 68.8
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 4.2e-14 80.9 64 67.2
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 5.5e-14 80.5 66 63.6
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 5.5e-14 80.5 62 62.9
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 9.3e-14 79.7 67 65.7
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 1.6e-13 79.0 67 59.7
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 3.5e-13 77.8 67 65.7
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 3.5e-13 77.8 65 64.6
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 6.0e-13 77.0 67 64.2
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 1.3e-12 75.9 64 67.2
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.8e-12 75.5 64 67.2
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 2.3e-12 75.1 60 65.0
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 3.0e-12 74.7 64 62.5
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 3.9e-12 74.3 67 58.2
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 5.1e-12 73.9 67 59.7
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 2.5e-11 71.6 65 60.0
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 5.6e-11 70.5 64 59.4
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 5.6e-11 70.5 67 59.7
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 7.4e-11 70.1 60 63.3
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 9.6e-11 69.7 66 54.5
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 9.6e-11 69.7 66 54.5
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 9.6e-11 69.7 66 54.5
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 9.6e-11 69.7 66 54.5
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 9.6e-11 69.7 66 54.5
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 9.6e-11 69.7 66 59.1
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 9.6e-11 69.7 67 58.2
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 9.6e-11 69.7 67 56.7
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 1.3e-10 69.3 64 59.4
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 1.3e-10 69.3 67 56.7
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 1.6e-10 68.9 67 58.2
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.6e-10 68.9 64 60.9
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.6e-10 68.9 67 56.7
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 2.8e-10 68.2 60 63.3
Glyma.08G255700 Glycine max HOM05D002873 ORTHO05D002978 2.8e-10 68.2 61 57.4
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 4.8e-10 67.4 67 56.7
Peaxi162Scf00479g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 6.2e-10 67.0 67 56.7
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 8.2e-10 66.6 64 59.4
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 8.2e-10 66.6 67 56.7
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 8.2e-10 66.6 67 56.7
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 1.4e-09 65.9 67 53.7
Hma1.2p1_0588F.1_g184450 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 1.4e-09 65.9 60 63.3
Nitab4.5_0006524g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.4e-09 65.9 69 55.1
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.4e-09 65.9 67 53.7
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 51.5
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 51.5
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 51.5
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 51.5
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 1.8e-09 65.5 62 53.2
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 2.4e-09 65.1 66 51.5
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 3.1e-09 64.7 64 54.7
Aa31LG5G10000 Aethionema arabicum HOM05D002873 ORTHO05D002978 5.3e-09 63.9 71 53.5
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 5.3e-09 63.9 66 50.0
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 5.3e-09 63.9 66 50.0
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 5.3e-09 63.9 66 50.0
Psat3g191840 Pisum sativum HOM05D002873 ORTHO05D002978 5.3e-09 63.9 60 55.0
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 6.9e-09 63.5 64 54.7
AT3G02480 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 9.0e-09 63.2 66 50.0
CSS0045706 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 9.0e-09 63.2 67 55.2
CSS0047860 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 9.0e-09 63.2 67 55.2
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 9.0e-09 63.2 64 56.2
Sed0011149 Sechium edule HOM05D002873 ORTHO05D002978 9.0e-09 63.2 73 52.1
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 1.2e-08 62.8 66 50.0
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.2e-08 62.8 67 55.2
Potri.004G106350 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.2e-08 62.8 61 59.0
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 1.2e-08 62.8 67 53.7
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 2.0e-08 62.0 67 55.2
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 2.0e-08 62.0 64 57.8
Medtr7g020780 Medicago truncatula HOM05D002873 ORTHO05D002978 2.6e-08 61.6 67 52.2
Phvul.008G022400 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 2.6e-08 61.6 70 54.3
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 2.6e-08 61.6 64 56.2
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 3.4e-08 61.2 67 53.7
Hma1.2p1_0588F.1_g184500 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 3.4e-08 61.2 67 56.7
Hund13793 Selenicereus undatus HOM05D002873 ORTHO05D002978 4.5e-08 60.8 57 59.6
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 7.6e-08 60.1 61 54.1
Nitab4.5_0012845g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 7.6e-08 60.1 67 52.2
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.0e-07 59.7 64 53.1
A02p03320 Brassica napus HOM05D010783 ORTHO05D013000 1.3e-07 59.3 63 54.0
BraA02t05303Z Brassica rapa HOM05D010783 ORTHO05D013000 1.3e-07 59.3 63 54.0
Migut.N00988 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.3e-07 59.3 67 52.2
FAN09G3043 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.3e-07 59.3 67 55.2
TAR374G1020 Trochodendron aralioides HOM05D061650 ORTHO05D002978 1.3e-07 59.3 41 75.6
C09p61100 Brassica napus HOM05D010783 ORTHO05D013000 1.7e-07 58.9 63 54.0
BolC9t58953H Brassica oleracea HOM05D010783 ORTHO05D013000 1.7e-07 58.9 63 54.0
SalBow1G2879 Salvia bowleyana HOM05D025819 ORTHO05D030564 1.7e-07 58.9 67 47.8
SalBow1G7806 Salvia bowleyana HOM05D025819 ORTHO05D030564 1.7e-07 58.9 67 47.8
GSVIVG01036482001 Vitis vinifera HOM05D002873 ORTHO05D002978 1.7e-07 58.9 64 51.6
Migut.N00991 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.2e-07 58.5 67 52.2
FAN14G0065 Fragaria x ananassa HOM05D003981 ORTHO05D003666 2.2e-07 58.5 47 68.1
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 2.2e-07 58.5 64 51.6
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 2.2e-07 58.5 64 53.1
Nitab4.5_0003384g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 2.9e-07 58.2 58 53.4
PSO478G1110 Papaver somniferum HOM05D002873 ORTHO05D002978 2.9e-07 58.2 64 51.6
A10p23100 Brassica napus HOM05D010783 ORTHO05D013000 4.9e-07 57.4 63 52.4
BraA10t44378Z Brassica rapa HOM05D010783 ORTHO05D013000 4.9e-07 57.4 63 52.4
Eucgr.J01446 Eucalyptus grandis HOM05D002873 ORTHO05D002978 4.9e-07 57.4 118 36.4
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 4.9e-07 57.4 64 54.7
Sp6g28150 Schrenkiella parvula HOM05D010783 ORTHO05D013000 4.9e-07 57.4 63 52.4
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 4.9e-07 57.4 64 50.0
BcaNung02219 Brassica carinata HOM05D010783 ORTHO05D013000 6.5e-07 57.0 63 52.4
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 6.5e-07 57.0 64 50.0
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 6.5e-07 57.0 64 50.0
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 6.5e-07 57.0 64 54.7
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 8.4e-07 56.6 59 50.8
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 8.4e-07 56.6 59 50.8
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 8.4e-07 56.6 59 50.8
Lj1g0022638 Lotus japonicus HOM05D002873 ORTHO05D002978 8.4e-07 56.6 62 53.2
Peaxi162Scf01056g00020 Petunia axillaris HOM05D002873 ORTHO05D002978 8.4e-07 56.6 67 49.3
Carub.0006s1416 Capsella rubella HOM05D010783 ORTHO05D013000 1.1e-06 56.2 67 44.8
Cfa007988 Carpinus fangiana HOM05D002873 ORTHO05D002978 1.1e-06 56.2 90 40.0
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 1.1e-06 56.2 64 51.6
Sc11g0008060 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 48.5
Cpa.g.sc188.25 Carica papaya HOM05D002873 ORTHO05D002978 1.4e-06 55.8 65 47.7
Oeu032858.1 Olea europaea HOM05D002873 ORTHO05D002978 1.4e-06 55.8 67 49.3
C02p08090 Brassica napus HOM05D010783 ORTHO05D013000 1.9e-06 55.5 63 50.8
BolC2t06731H Brassica oleracea HOM05D010783 ORTHO05D013000 1.9e-06 55.5 63 50.8
Medtr7g019290 Medicago truncatula HOM05D002873 ORTHO05D002978 1.9e-06 55.5 69 50.7
BcaB08g36874 Brassica carinata HOM05D010783 ORTHO05D013000 2.5e-06 55.1 63 50.8
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 2.5e-06 55.1 66 47.0
Medtr7g018280 Medicago truncatula HOM05D002873 ORTHO05D002978 2.5e-06 55.1 95 40.0
Potri.017G108500 Populus trichocarpa HOM05D002873 ORTHO05D002978 2.5e-06 55.1 88 39.8
Rhsim08G0081300 Rhododendron simsii HOM05D002873 ORTHO05D002978 2.5e-06 55.1 42 66.7
AT5G15970 Arabidopsis thaliana HOM05D010783 ORTHO05D013000 3.2e-06 54.7 67 43.3
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 3.2e-06 54.7 66 50.0
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 3.2e-06 54.7 60 53.3
HanXRQChr14g0448071 Helianthus annuus HOM05D002873 ORTHO05D002978 3.2e-06 54.7 64 42.2
PSO017G1587 Papaver somniferum HOM05D002873 ORTHO05D002978 3.2e-06 54.7 64 50.0
PSO017G6817 Papaver somniferum HOM05D002873 ORTHO05D002978 3.2e-06 54.7 64 50.0
Sed0009523 Sechium edule HOM05D008630 ORTHO05D010727 3.2e-06 54.7 76 44.7
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 4.2e-06 54.3 64 51.6
Haze_14086 Corylus avellana HOM05D002873 ORTHO05D002978 4.2e-06 54.3 81 40.7
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 4.2e-06 54.3 64 50.0
vmacro18088 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 4.2e-06 54.3 67 49.3
BcaC03g18462 Brassica carinata HOM05D010783 ORTHO05D013000 5.5e-06 53.9 63 49.2
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 5.5e-06 53.9 64 50.0
Medtr7g109750 Medicago truncatula HOM05D002873 ORTHO05D002978 5.5e-06 53.9 67 53.7
Peaxi162Scf00019g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 5.5e-06 53.9 42 64.3
Sabra04G0075800 Salix brachista HOM05D002873 ORTHO05D002978 5.5e-06 53.9 91 41.8
Ca_06720_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 7.1e-06 53.5 69 53.6
HanXRQChr12g0380071 Helianthus annuus HOM05D021913 ORTHO05D002978 7.1e-06 53.5 67 47.8
AT5G15960 Arabidopsis thaliana HOM05D010783 ORTHO05D013000 9.3e-06 53.1 67 41.8
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 9.3e-06 53.1 59 49.2
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 9.3e-06 53.1 59 49.2
CAN.G497.26 Capsicum annuum HOM05D002873 ORTHO05D002978 9.3e-06 53.1 67 47.8
CAN.G497.27 Capsicum annuum HOM05D002873 ORTHO05D002978 9.3e-06 53.1 67 47.8
Rhsim10G0062500 Rhododendron simsii HOM05D007347 ORTHO05D009296 9.3e-06 53.1 42 64.3
GSVIVG01008194001 Vitis vinifera HOM05D002873 ORTHO05D002978 9.3e-06 53.1 65 46.2


User provided reference genes

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