Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 7.5e-173 610.5 333 100.0
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 9.0e-126 454.1 351 70.7
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 3.7e-119 432.2 351 69.5
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.4e-118 429.5 345 70.4
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.0e-116 424.1 351 68.1
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.8e-116 422.2 351 67.8
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 5.0e-116 421.8 352 69.6
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 5.5e-115 418.3 349 66.8
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 6.1e-114 414.8 349 66.8
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 1.8e-113 413.3 349 66.2
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 5.1e-113 411.8 351 67.8
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 8.8e-113 411.0 350 65.7
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 2.5e-112 409.5 350 66.6
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 2.2e-111 406.4 352 65.9
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 4.8e-111 405.2 348 65.5
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 4.8e-111 405.2 360 65.8
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 6.3e-111 404.8 349 67.9
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.1e-110 404.1 350 67.1
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 1.1e-110 404.1 348 65.8
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 1.4e-110 403.7 358 65.6
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 5.3e-110 401.7 352 65.3
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 9.1e-110 401.0 348 65.8
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 5.9e-109 398.3 352 65.9
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 1.1e-107 394.0 348 64.9
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 1.9e-107 393.3 351 66.1
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 4.2e-107 392.1 351 64.1
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 9.4e-107 391.0 351 64.7
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 9.4e-107 391.0 349 63.3
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 2.7e-106 389.4 350 64.6
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 2.3e-105 386.3 351 64.4
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 3.0e-105 386.0 352 62.5
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 6.7e-105 384.8 353 62.3
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 6.7e-105 384.8 351 64.4
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 8.8e-105 384.4 350 62.6
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 7.4e-104 381.3 346 65.0
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.7e-103 380.2 354 63.3
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 2.2e-103 379.8 358 60.6
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 2.2e-103 379.8 347 65.4
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 2.8e-103 379.4 353 62.9
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 6.3e-103 378.3 351 61.5
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.4e-102 377.1 352 61.9
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.8e-102 376.7 352 61.6
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 2.4e-102 376.3 354 61.9
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 9.1e-102 374.4 333 66.1
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 9.1e-102 374.4 351 61.8
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 3.5e-101 372.5 351 65.2
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 7.7e-101 371.3 398 57.8
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.0e-100 370.9 348 62.6
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 8.5e-100 367.9 352 62.5
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 8.5e-100 367.9 352 62.5
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 1.4e-99 367.1 295 67.8
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 5.5e-99 365.2 351 62.1
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 5.5e-99 365.2 348 62.4
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 9.4e-99 364.4 366 59.3
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.6e-98 363.6 353 61.5
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 2.3e-97 359.8 350 60.0
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 3.0e-97 359.4 350 62.0
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 1.1e-96 357.5 350 60.3
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.5e-96 357.1 340 62.1
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 3.3e-96 355.9 350 59.4
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 9.7e-96 354.4 349 60.2
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.3e-95 354.0 350 58.9
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 3.7e-95 352.4 418 52.9
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 3.7e-95 352.4 350 58.9
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 1.1e-94 350.9 350 58.3
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 2.4e-94 349.7 352 59.4
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 9.1e-94 347.8 349 58.5
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 9.1e-94 347.8 350 58.6
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 7.7e-93 344.7 340 60.6
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 2.9e-92 342.8 351 59.5
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 1.5e-91 340.5 365 58.4
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.9e-91 340.1 350 58.6
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.9e-91 340.1 350 58.6
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 2.5e-91 339.7 350 58.3
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 2.5e-91 339.7 350 58.3
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 4.7e-90 335.5 352 57.1
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 1.4e-89 334.0 352 56.8
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 2.3e-89 333.2 291 65.6
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 2.3e-89 333.2 348 59.2
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 3.0e-89 332.8 350 57.1
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 3.0e-89 332.8 350 57.1
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 5.2e-89 332.0 340 57.4
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 6.8e-89 331.6 352 56.8
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 6.8e-89 331.6 349 58.5
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 1.2e-88 330.9 350 57.4
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 3.4e-88 329.3 352 56.5
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 2.2e-87 326.6 295 63.1
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 6.3e-87 325.1 350 56.3
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 8.3e-87 324.7 373 55.5
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 3.8e-84 315.8 342 55.0
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 7.2e-83 311.6 252 69.0
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 2.1e-82 310.1 379 51.5
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 1.2e-80 304.3 339 55.2
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 1.7e-79 300.4 353 52.7
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 3.7e-79 299.3 344 52.6
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 1.8e-78 297.0 357 53.8
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 8.6e-76 288.1 347 55.3
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 5.6e-67 258.8 350 49.4
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 2.9e-63 246.5 233 61.8
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 2.0e-61 240.4 201 65.2
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 3.3e-59 233.0 337 44.8
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 1.5e-56 224.2 194 65.5
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 7.8e-53 211.8 339 44.8
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 1.7e-52 210.7 233 55.4
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 5.6e-51 205.7 229 55.9
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 2.3e-49 200.3 142 72.5
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 2.1e-45 187.2 166 64.5
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 9.6e-43 178.3 202 54.0
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 1.7e-39 167.5 298 38.9
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.0e-36 158.3 235 45.1
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 5.1e-36 156.0 299 39.8
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.1e-35 154.8 237 43.9
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.9e-35 154.1 156 57.7
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 2.8e-34 150.2 308 37.0
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 3.2e-30 136.7 114 64.0
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 4.2e-30 136.3 234 43.6
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 1.2e-29 134.8 97 73.2
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 1.0e-28 131.7 369 31.4
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 7.3e-27 125.6 229 42.4
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.1e-22 111.7 301 35.5
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 2.3e-20 104.0 93 59.1
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 2.5e-19 100.5 65 76.9
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 3.1e-17 93.6 101 55.4
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 2.6e-16 90.5 163 42.3
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 1.7e-15 87.8 74 64.9
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 4.9e-15 86.3 103 43.7
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.2e-13 81.6 236 34.3
RcHm_v2.0_Chr2g0163651 Rosa chinensis HOM05D005714 ORTHO05D006812 7.9e-13 79.0 85 60.0
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 2.5e-11 73.9 79 53.2
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 5.7e-11 72.8 122 43.4
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 1.5e-08 64.7 121 42.1
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.5e-08 64.7 46 73.9
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 3.4e-08 63.5 87 49.4
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 5.5e-06 56.2 134 33.6


User provided reference genes

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