Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 7.4e-226 786.9 420 100.0
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.9e-144 516.5 404 69.8
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 5.6e-133 478.4 413 65.9
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 1.3e-129 467.2 426 63.1
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 6.0e-127 458.4 397 64.5
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 9.6e-125 451.1 368 66.3
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 2.6e-122 443.0 401 61.8
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 7.6e-122 441.4 404 60.1
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 1.4e-120 437.2 396 61.4
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 3.2e-120 436.0 421 58.4
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 7.1e-120 434.9 392 61.7
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 7.1e-120 434.9 375 63.7
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 4.6e-119 432.2 401 62.1
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 7.9e-119 431.4 394 61.7
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.9e-119 431.4 394 61.7
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 3.0e-118 429.5 421 58.4
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 8.7e-118 427.9 394 61.4
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 2.5e-117 426.4 417 59.2
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 2.5e-117 426.4 411 60.6
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 4.3e-117 425.6 333 67.6
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 5.7e-117 425.2 421 58.2
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 7.4e-117 424.9 375 63.2
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 9.7e-117 424.5 450 55.8
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.3e-116 424.1 419 59.4
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 2.8e-116 422.9 357 66.1
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.4e-115 420.6 394 60.7
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 1.8e-115 420.2 375 61.6
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 9.0e-115 417.9 341 65.7
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 2.0e-114 416.8 409 57.9
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 2.0e-114 416.8 419 58.0
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 2.0e-114 416.8 389 60.2
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 5.9e-114 415.2 405 60.5
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 7.6e-114 414.8 380 60.0
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.5e-113 411.8 335 66.9
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 8.5e-113 411.4 392 59.2
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 1.4e-112 410.6 402 57.0
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 1.9e-112 410.2 373 59.2
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 2.5e-112 409.8 392 58.9
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 2.5e-112 409.8 376 60.1
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 4.2e-112 409.1 410 57.1
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 9.3e-112 407.9 371 62.3
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 9.3e-112 407.9 388 59.3
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 1.6e-111 407.1 349 62.5
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 3.6e-111 406.0 411 57.7
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.0e-110 404.4 370 61.9
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 9.7e-109 397.9 404 56.2
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.3e-108 395.2 471 52.0
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 3.1e-107 392.9 376 58.8
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 3.1e-107 392.9 394 56.1
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 5.3e-107 392.1 368 57.9
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 6.9e-107 391.7 393 56.0
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 9.1e-107 391.3 370 57.8
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 9.1e-107 391.3 398 54.8
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 1.5e-106 390.6 386 57.3
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 1.5e-106 390.6 398 56.3
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 2.0e-106 390.2 363 57.6
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 4.5e-106 389.0 409 53.3
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 5.9e-106 388.7 410 54.6
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 5.9e-106 388.7 365 58.6
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 2.9e-105 386.3 335 61.5
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 6.5e-105 385.2 337 61.7
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 6.5e-105 385.2 507 49.1
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 1.1e-104 384.4 405 54.1
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 1.1e-104 384.4 412 55.6
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 1.9e-104 383.6 376 55.6
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 1.9e-104 383.6 376 55.6
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 7.2e-104 381.7 413 53.8
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.2e-103 380.9 374 55.9
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 2.7e-103 379.8 366 56.6
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 2.7e-103 379.8 366 56.6
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 3.6e-103 379.4 362 58.0
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 4.7e-103 379.0 408 54.4
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 6.1e-103 378.6 398 55.0
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 7.9e-103 378.3 335 60.9
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 3.0e-102 376.3 367 57.5
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 3.0e-102 376.3 376 55.6
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.0e-101 373.6 440 52.0
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 7.4e-101 371.7 367 56.1
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 2.9e-97 359.8 357 56.6
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 7.2e-96 355.1 388 52.6
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 9.4e-96 354.8 377 55.7
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 2.5e-88 330.1 339 56.0
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 5.5e-88 328.9 282 63.1
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 1.6e-87 327.4 282 61.3
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 2.2e-84 317.0 479 42.8
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 3.1e-83 313.2 278 60.4
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 3.0e-78 296.6 296 57.4
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 4.0e-78 296.2 422 45.7
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 7.0e-75 285.4 359 48.2
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 4.5e-74 282.7 396 44.4
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 4.2e-72 276.2 512 40.0
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 1.4e-70 271.2 246 60.6
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 1.8e-70 270.8 373 44.5
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 1.2e-69 268.1 337 48.7
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 6.3e-68 262.3 218 61.0
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 7.8e-66 255.4 262 56.9
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 3.6e-63 246.5 218 61.0
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 4.7e-63 246.1 238 63.0
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 6.8e-62 242.3 264 52.3
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 1.5e-61 241.1 264 52.7
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 2.4e-59 233.8 212 59.4
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 5.4e-59 232.6 353 43.1
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 7.8e-58 228.8 238 54.2
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 3.9e-57 226.5 332 41.3
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 1.1e-56 224.9 459 38.8
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 1.5e-56 224.6 234 56.0
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 2.3e-54 217.2 271 45.4
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 2.1e-50 204.1 233 55.8
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 8.1e-47 192.2 133 79.7
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 3.4e-45 186.8 172 60.5
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 4.4e-45 186.4 326 39.9
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 1.7e-44 184.5 229 49.3
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 5.4e-43 179.5 229 50.2
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.7e-42 177.2 346 35.3
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 1.3e-41 174.9 213 46.5
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 2.1e-39 167.5 123 76.4
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-38 163.3 238 41.2
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 4.0e-38 163.3 128 68.0
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 2.6e-37 160.6 352 32.4
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 2.2e-36 157.5 184 52.2
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 1.9e-35 154.5 147 58.5
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 2.1e-31 141.0 295 29.8
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 3.8e-28 130.2 96 69.8
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.2e-26 125.2 331 30.8
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 6.0e-26 122.9 149 53.0
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.0e-25 122.1 121 61.2
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.3e-25 120.9 354 27.7
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 5.1e-25 119.8 332 29.2
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 3.3e-24 117.1 94 66.0
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 7.3e-24 115.9 383 29.0
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.4e-22 111.7 85 70.6
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 3.1e-22 110.5 84 65.5
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 4.0e-22 110.2 113 57.5
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.3e-22 109.8 116 56.0
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.9e-22 109.4 124 53.2
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 8.4e-20 102.4 106 49.1
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 4.2e-19 100.1 155 40.6
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 1.2e-18 98.6 75 68.0
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 1.6e-18 98.2 85 55.3
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 2.7e-18 97.4 117 51.3
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 2.7e-18 97.4 74 74.3
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 4.8e-15 86.7 136 41.9
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 8.1e-15 85.9 154 40.9
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 4.5e-13 80.1 66 59.1
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.6e-13 79.3 52 75.0
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 7.6e-13 79.3 59 64.4
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 2.2e-12 77.8 50 84.0
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 1.1e-11 75.5 67 58.2
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 1.2e-10 72.0 70 54.3
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 1.0e-09 68.9 340 26.2
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 1.8e-09 68.2 67 55.2
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 5.6e-08 63.2 48 62.5
Cre02.g095086 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 1.6e-07 61.6 234 25.2
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 1.1e-06 58.9 38 76.3
MELO3C034937.2 Cucumis melo HOM05D005062 ORTHO05D006410 1.4e-06 58.5 74 47.3
FAN16G1964 Fragaria x ananassa HOM05D000943 ORTHO05D008314 2.4e-06 57.8 414 23.4
MD11G1271200 Malus domestica HOM05D000943 ORTHO05D008314 2.4e-06 57.8 396 23.0
FAN25G0219 Fragaria x ananassa HOM05D000943 ORTHO05D008314 3.1e-06 57.4 416 24.0
MD03G1251200 Malus domestica HOM05D000943 ORTHO05D008314 9.0e-06 55.8 395 22.8
RcHm_v2.0_Chr5g0029301 Rosa chinensis HOM05D000943 ORTHO05D008314 9.0e-06 55.8 406 22.4


User provided reference genes

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