Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 0.0e+00 1110.9 564 100.0
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 8.0e-284 979.9 566 86.9
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 4.5e-279 964.1 566 85.0
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 7.3e-277 956.8 565 85.5
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.6e-276 955.7 564 84.9
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 6.8e-275 950.3 565 84.4
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 5.7e-274 947.2 564 83.7
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 1.3e-273 946.0 562 84.3
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 9.2e-272 939.9 556 84.7
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 1.2e-271 939.5 564 83.5
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.7e-271 938.3 556 84.5
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.9e-270 934.5 560 83.9
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 8.6e-270 933.3 565 82.3
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 8.6e-270 933.3 554 84.8
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.5e-269 932.6 562 83.1
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.3e-269 931.4 560 83.6
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 3.3e-269 931.4 565 81.1
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 4.3e-269 931.0 633 76.5
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 2.8e-268 928.3 566 81.4
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 6.2e-268 927.2 564 83.0
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 6.2e-268 927.2 565 82.3
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 5.2e-267 924.1 549 82.9
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 2.6e-266 921.8 565 80.7
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 3.4e-266 921.4 569 80.8
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.7e-265 919.1 566 80.7
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 2.9e-265 918.3 562 81.9
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.1e-264 916.4 565 81.4
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 3.2e-264 914.8 559 81.0
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 7.0e-264 913.7 565 81.1
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 1.6e-263 912.5 563 80.3
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 6.0e-263 910.6 565 79.8
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 7.8e-263 910.2 565 80.7
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.7e-262 909.1 565 80.7
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.7e-262 909.1 559 80.0
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 8.6e-262 906.7 551 81.9
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 4.3e-261 904.4 564 80.5
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 3.6e-260 901.4 567 79.5
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 4.7e-260 901.0 556 80.9
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.1e-259 899.8 556 80.8
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.4e-259 899.4 556 80.9
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 5.2e-259 897.5 565 79.1
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 8.9e-259 896.7 565 78.8
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.5e-258 896.0 561 80.0
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 2.6e-258 895.2 604 76.2
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 4.4e-258 894.4 565 78.6
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.8e-258 894.0 556 80.4
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 9.9e-258 893.3 565 78.4
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 3.7e-257 891.3 565 78.8
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.4e-256 889.4 576 78.1
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 2.4e-256 888.6 565 80.5
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 4.1e-256 887.9 565 78.4
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 2.7e-255 885.2 565 78.2
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 7.8e-255 883.6 565 77.9
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.3e-254 882.9 566 78.3
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 3.0e-254 881.7 547 81.4
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 3.0e-254 881.7 565 78.9
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 1.1e-253 879.8 565 77.7
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.5e-253 878.6 584 76.7
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 2.5e-253 878.6 565 78.6
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 4.7e-252 874.4 583 75.3
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 2.3e-251 872.1 544 80.0
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 1.2e-250 869.8 573 75.9
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 2.0e-250 869.0 556 77.5
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 2.6e-250 868.6 565 78.1
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 3.4e-250 868.2 565 77.7
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 3.8e-249 864.8 562 77.6
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 3.5e-247 858.2 567 76.9
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 4.6e-247 857.8 566 76.7
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 6.0e-247 857.4 556 78.4
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 7.8e-247 857.1 563 76.0
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.0e-246 856.7 555 77.1
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 2.3e-246 855.5 567 76.5
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 3.0e-246 855.1 565 75.0
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 1.1e-245 853.2 561 75.6
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.5e-245 852.8 564 75.4
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 5.6e-245 850.9 565 76.3
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.6e-244 849.4 557 77.6
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.1e-243 846.7 603 71.5
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 4.0e-243 844.7 563 75.8
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 9.0e-243 843.6 553 77.9
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 1.2e-242 843.2 555 75.7
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 4.4e-242 841.3 555 75.7
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 5.8e-242 840.9 555 75.9
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.3e-241 839.7 553 77.6
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 3.8e-241 838.2 552 75.2
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 8.4e-241 837.0 563 73.9
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 1.1e-240 836.6 567 75.0
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.9e-240 835.9 555 75.3
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 2.4e-240 835.5 568 75.7
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 7.1e-240 833.9 567 74.8
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 1.2e-239 833.2 552 75.0
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 7.8e-239 830.5 620 70.8
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 6.6e-238 827.4 539 78.1
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 3.3e-237 825.1 559 73.5
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 7.3e-237 823.9 555 75.9
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 1.6e-236 822.8 559 73.7
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.6e-236 822.8 545 75.2
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 6.2e-236 820.8 555 74.2
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 8.1e-236 820.5 601 71.2
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.8e-235 819.3 554 74.4
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.8e-235 819.3 554 74.4
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 3.1e-235 818.5 554 74.2
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 1.5e-234 816.2 520 76.9
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 2.0e-234 815.8 632 68.0
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 3.4e-234 815.1 552 74.1
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 4.5e-234 814.7 549 74.1
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 3.8e-233 811.6 555 74.8
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 2.4e-232 808.9 534 75.5
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 2.7e-231 805.4 567 71.8
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 5.1e-230 801.2 554 72.7
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 8.7e-230 800.4 562 73.5
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 3.3e-229 798.5 562 71.5
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 4.8e-228 794.7 558 70.3
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 4.5e-226 788.1 565 69.7
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 4.0e-219 765.0 558 68.5
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 9.0e-219 763.8 454 83.3
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 2.5e-216 755.7 476 78.4
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 2.3e-214 749.2 576 67.2
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 2.0e-210 736.1 479 77.2
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 7.6e-210 734.2 566 68.0
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.8e-206 723.0 480 75.0
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 4.7e-199 698.4 562 62.1
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 1.4e-198 696.8 506 66.4
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 1.5e-189 666.8 549 60.8
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 4.7e-183 645.2 559 59.4
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 2.4e-179 632.9 419 76.1
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.2e-173 614.0 367 82.3
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 1.1e-168 597.4 359 84.1
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 2.8e-164 582.8 401 71.3
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 1.4e-163 580.5 401 71.3
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 3.1e-163 579.3 401 71.1
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 3.5e-146 522.7 558 49.8
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 3.2e-131 473.0 334 71.9
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 4.2e-131 472.6 533 45.4
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 3.0e-129 466.5 272 83.5
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 4.8e-119 432.6 335 67.8
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.2e-101 374.8 220 80.9
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 4.1e-86 323.2 195 77.4
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.2e-85 321.6 200 84.0
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 5.0e-68 263.1 195 69.2
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 8.3e-55 219.2 141 76.6
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 7.0e-54 216.1 152 69.1
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 8.6e-52 209.1 147 70.7
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 9.2e-46 189.1 189 56.1
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.0e-44 185.7 117 76.9
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 5.2e-33 146.7 85 90.6
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 3.3e-27 127.5 89 71.9
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 1.5e-24 118.6 89 67.4
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 2.0e-24 118.2 113 54.0
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 2.6e-24 117.9 96 62.5
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 2.4e-22 111.3 82 72.0
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.9e-20 104.0 85 57.6
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 1.6e-10 72.0 55 60.0
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 7.6e-08 63.2 112 36.6
VMungo0464G0759 Vigna mungo HOM05D004765 ORTHO05D005900 1.9e-06 58.5 50 62.0


User provided reference genes

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