Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 1.4e-176 622.9 316 100.0
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 1.5e-125 453.4 320 75.0
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 2.2e-121 439.5 318 73.0
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 5.4e-120 434.9 320 72.8
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 9.2e-120 434.1 311 73.3
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 9.2e-120 434.1 320 72.2
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 1.6e-119 433.3 320 70.6
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 9.5e-117 424.1 317 71.6
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 2.1e-116 422.9 317 71.3
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 1.4e-115 420.2 315 68.6
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.4e-115 420.2 317 71.3
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 2.3e-115 419.5 314 72.0
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 3.7e-113 412.1 316 68.0
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 3.7e-113 412.1 309 68.0
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 4.9e-113 411.8 325 67.7
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 1.2e-111 407.1 316 66.5
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 3.5e-111 405.6 316 68.4
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 7.8e-111 404.4 312 67.9
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 1.0e-110 404.1 316 69.9
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 2.3e-110 402.9 317 68.5
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 2.3e-110 402.9 319 68.0
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 3.0e-110 402.5 319 68.0
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 3.3e-109 399.1 313 68.4
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 5.6e-109 398.3 297 70.7
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 9.5e-109 397.5 297 70.7
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 3.6e-108 395.6 323 65.0
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 1.5e-106 390.2 307 64.8
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 2.6e-106 389.4 322 67.1
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 7.1e-104 381.3 317 65.3
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 2.7e-103 379.4 314 64.3
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 3.5e-103 379.0 314 64.6
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 6.0e-103 378.3 297 67.3
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 5.1e-102 375.2 323 63.5
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 1.1e-101 374.0 320 64.1
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 2.8e-100 369.4 266 69.9
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 4.7e-100 368.6 326 63.2
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 8.1e-100 367.9 318 62.9
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 1.4e-99 367.1 266 74.1
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 5.2e-99 365.2 285 67.7
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 5.2e-99 365.2 308 62.7
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 8.9e-99 364.4 308 62.3
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 3.4e-98 362.5 319 61.8
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 1.3e-97 360.5 297 64.3
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 2.9e-97 359.4 321 59.5
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 2.9e-97 359.4 307 64.2
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 8.3e-97 357.8 309 65.0
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 1.4e-96 357.1 318 62.9
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 2.4e-96 356.3 294 64.3
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 7.1e-96 354.8 291 63.2
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 1.6e-95 353.6 290 63.4
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 3.5e-95 352.4 296 62.5
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 4.6e-95 352.1 307 61.2
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 2.3e-94 349.7 292 62.3
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 2.3e-94 349.7 310 59.7
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 3.9e-94 349.0 293 62.8
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 6.6e-94 348.2 290 62.8
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 1.5e-93 347.1 319 58.3
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 3.3e-93 345.9 291 62.2
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 7.3e-93 344.7 282 61.7
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 7.3e-93 344.7 293 62.8
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 9.6e-93 344.4 290 62.8
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 9.6e-93 344.4 292 61.6
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 8.1e-92 341.3 292 61.0
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 1.8e-91 340.1 319 57.7
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.5e-90 337.0 312 60.3
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 3.8e-89 332.4 348 54.9
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 1.4e-88 330.5 262 66.0
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 1.4e-88 330.5 295 61.0
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 2.4e-88 329.7 281 64.1
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 9.3e-88 327.8 260 64.2
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 3.5e-87 325.9 285 60.7
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 1.3e-86 323.9 296 59.5
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 3.3e-85 319.3 315 57.8
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 1.8e-83 313.5 294 57.8
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 6.9e-83 311.6 326 53.4
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 5.8e-82 308.5 319 55.8
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 9.9e-82 307.8 289 60.6
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 3.8e-81 305.8 261 62.8
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 1.9e-80 303.5 302 53.6
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 7.8e-79 298.1 420 43.6
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 2.5e-77 293.1 308 51.6
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 7.3e-77 291.6 301 49.8
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 7.3e-77 291.6 309 54.4
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 8.1e-76 288.1 283 54.1
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 4.0e-75 285.8 309 52.1
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 9.9e-74 281.2 299 52.5
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 1.7e-73 280.4 265 54.3
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 5.6e-69 265.4 311 52.7
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 4.8e-68 262.3 261 55.2
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 2.6e-66 256.5 161 80.7
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 2.2e-65 253.4 228 61.4
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 3.8e-65 252.7 270 52.2
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 6.5e-65 251.9 279 51.3
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 3.2e-64 249.6 200 62.0
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 7.9e-63 245.0 287 48.4
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 5.7e-61 238.8 225 57.3
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.4e-59 234.2 152 77.6
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 1.8e-59 233.8 290 45.2
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 2.4e-59 233.4 157 77.1
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 1.9e-53 213.8 197 58.9
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 6.3e-52 208.8 272 47.1
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 2.4e-51 206.8 274 40.9
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 4.1e-51 206.1 131 78.6
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 2.1e-47 193.7 136 70.6
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 1.1e-45 188.0 243 47.7
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 5.7e-45 185.7 193 56.5
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 1.3e-41 174.5 174 57.5
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 4.2e-40 169.5 211 46.9
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.6e-39 167.5 105 79.0
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 2.1e-39 167.2 278 38.1
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 8.8e-38 161.8 174 48.3
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.1e-35 154.8 105 74.3
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 1.8e-30 137.5 131 58.8
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 3.0e-30 136.7 139 54.7
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 4.0e-30 136.3 143 53.8
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 1.3e-28 131.3 87 72.4
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 2.8e-28 130.2 81 79.0
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 3.7e-28 129.8 107 66.4
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 9.4e-24 115.2 138 47.8
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 2.9e-17 93.6 72 68.1
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 9.4e-16 88.6 113 47.8
Cpa.g.sc195.26 Carica papaya HOM05D005386 ORTHO05D006981 1.4e-14 84.7 102 50.0
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 2.3e-14 84.0 90 57.8
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 1.2e-13 81.6 82 58.5
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 2.2e-12 77.4 47 76.6
FvH4_2g10341 Fragaria vesca HOM05D005386 ORTHO05D006981 2.7e-10 70.5 76 53.9
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 2.7e-10 70.5 46 71.7
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 4.5e-10 69.7 98 46.9
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 3.8e-09 66.6 54 63.0
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 1.5e-08 64.7 90 38.9
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 2.5e-08 63.9 153 28.8
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 5.6e-08 62.8 68 57.4
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 1.0e-06 58.5 66 57.6
Ciclev10029903m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.4e-06 58.2 56 53.6
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 1.8e-06 57.8 49 61.2
arahy.Tifrunner.gnm1.ann1.V0D9HX Arachis hypogaea HOM05D005386 ORTHO05D084459 2.3e-06 57.4 55 52.7


User provided reference genes

Program Settings