Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 4.7e-121 438.0 232 100.0
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 2.8e-89 332.4 224 79.5
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 9.5e-82 307.4 199 79.9
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.2e-81 307.0 224 72.8
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 6.8e-80 301.2 224 73.7
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.5e-79 300.1 224 71.9
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 9.8e-79 297.4 224 71.4
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 2.9e-78 295.8 226 71.2
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 4.1e-77 292.0 228 69.7
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 4.1e-77 292.0 203 74.4
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 5.4e-77 291.6 209 74.6
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 9.2e-77 290.8 227 70.9
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 9.2e-77 290.8 201 76.6
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 2.7e-76 289.3 224 71.4
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 3.5e-76 288.9 193 78.2
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 4.6e-76 288.5 209 71.3
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 4.6e-76 288.5 209 73.7
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.0e-75 287.3 225 72.0
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 3.0e-75 285.8 204 71.6
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 3.9e-75 285.4 228 68.4
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 3.9e-75 285.4 225 71.6
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 5.0e-75 285.0 224 70.1
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 5.0e-75 285.0 269 59.9
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 6.6e-75 284.6 201 74.1
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 8.6e-75 284.3 237 65.4
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 1.5e-74 283.5 227 70.0
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 4.3e-74 282.0 232 67.2
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 5.6e-74 281.6 227 69.6
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 1.2e-73 280.4 204 72.1
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 1.2e-73 280.4 236 67.8
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 1.4e-72 276.9 209 68.4
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 4.0e-72 275.4 220 66.8
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 4.0e-72 275.4 217 69.6
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 4.0e-72 275.4 225 67.1
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 6.8e-72 274.6 210 70.0
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 9.9e-71 270.8 215 68.4
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 1.7e-70 270.0 224 66.5
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 2.9e-70 269.2 213 68.5
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 2.9e-70 269.2 200 72.0
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 1.1e-69 267.3 209 67.5
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.1e-69 267.3 200 69.5
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.1e-69 267.3 200 69.5
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.4e-69 266.9 200 69.0
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 1.4e-69 266.9 200 69.0
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 4.1e-69 265.4 208 71.2
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 4.1e-69 265.4 200 69.0
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 9.2e-69 264.2 247 58.7
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 1.2e-68 263.8 236 61.0
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 4.6e-68 261.9 226 66.8
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 6.0e-68 261.5 200 67.5
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 7.8e-68 261.2 211 69.7
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.3e-67 259.6 209 67.9
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 9.5e-66 254.2 209 66.0
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 9.5e-66 254.2 209 66.0
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 1.2e-65 253.8 200 65.5
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.6e-65 253.4 203 65.5
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 2.1e-65 253.1 227 63.4
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 3.6e-65 252.3 209 66.5
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 3.6e-65 252.3 210 67.1
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 8.1e-65 251.1 227 59.0
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 1.1e-64 250.8 209 65.6
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 1.1e-64 250.8 206 64.6
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 1.4e-64 250.4 200 64.0
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 1.8e-64 250.0 209 66.0
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 1.8e-64 250.0 224 64.3
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 4.0e-64 248.8 248 57.7
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 4.0e-64 248.8 209 67.0
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 5.2e-64 248.4 226 62.4
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 5.2e-64 248.4 227 61.2
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 6.8e-64 248.1 203 65.5
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 8.9e-64 247.7 216 63.9
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 8.9e-64 247.7 201 63.7
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 1.5e-63 246.9 197 66.5
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 2.0e-63 246.5 201 66.7
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 4.4e-63 245.4 203 67.0
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 4.4e-63 245.4 221 62.9
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 5.8e-63 245.0 220 62.3
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 1.3e-62 243.8 204 63.2
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 2.2e-62 243.0 213 63.8
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 3.8e-62 242.3 238 59.7
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 1.4e-61 240.4 206 64.6
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 3.2e-61 239.2 222 60.8
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 3.2e-61 239.2 222 60.8
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 2.1e-60 236.5 197 67.0
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 2.1e-60 236.5 197 67.0
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 4.6e-60 235.3 226 59.7
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 3.0e-59 232.6 204 62.3
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 5.1e-59 231.9 220 59.1
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 8.7e-59 231.1 209 63.6
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 1.1e-58 230.7 226 58.0
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 1.5e-58 230.3 233 60.1
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 3.3e-58 229.2 223 58.3
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 7.3e-58 228.0 207 63.3
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 7.3e-58 228.0 207 63.3
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 9.6e-58 227.6 205 59.5
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 2.1e-57 226.5 214 58.4
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 2.1e-57 226.5 204 59.8
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 2.8e-57 226.1 170 71.2
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 3.6e-57 225.7 170 70.6
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 4.7e-57 225.3 176 66.5
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 6.2e-57 224.9 203 63.5
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 6.2e-57 224.9 200 60.0
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 1.1e-56 224.2 226 57.5
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 5.8e-55 218.4 209 60.3
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 5.8e-55 218.4 220 57.3
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 3.8e-54 215.7 211 58.3
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 1.1e-53 214.2 215 56.7
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 1.4e-53 213.8 189 60.8
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 1.0e-51 207.6 170 65.3
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 2.3e-51 206.5 175 65.1
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 3.0e-51 206.1 198 56.1
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 3.3e-50 202.6 233 51.9
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 1.4e-48 197.2 209 56.0
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 3.1e-48 196.1 203 56.7
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 4.5e-47 192.2 162 63.6
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 5.8e-47 191.8 200 56.0
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.4e-45 187.2 217 50.7
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 4.6e-44 182.2 197 53.8
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 1.3e-43 180.6 216 47.7
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 2.8e-41 172.9 196 52.0
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 8.1e-41 171.4 145 63.4
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 4.5e-39 165.6 162 55.6
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 2.2e-38 163.3 170 55.3
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 8.4e-38 161.4 169 55.0
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 3.2e-37 159.5 131 64.1
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.6e-36 157.1 99 82.8
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 3.3e-34 149.4 157 56.7
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 5.6e-34 148.7 108 72.2
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 3.7e-33 146.0 232 43.5
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 4.8e-33 145.6 108 71.3
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 3.1e-32 142.9 198 43.4
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 1.2e-31 141.0 108 69.4
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 6.5e-30 135.2 107 64.5
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 8.4e-30 134.8 209 43.5
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 1.1e-29 134.4 156 49.4
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 9.3e-29 131.3 119 63.9
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.1e-28 130.2 132 58.3
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 3.9e-27 125.9 149 56.4
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 6.7e-27 125.2 98 67.3
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 1.5e-26 124.0 100 68.0
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 3.3e-26 122.9 203 41.4
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.3e-25 120.9 105 61.9
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 1.0e-19 101.3 82 65.9
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 8.2e-17 91.7 114 50.0
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 2.4e-16 90.1 70 68.6
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 4.5e-15 85.9 169 42.0
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 1.0e-11 74.7 94 50.0
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 3.9e-11 72.8 136 43.4
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 1.7e-09 67.4 47 74.5
arahy.Tifrunner.gnm1.ann1.1A1X10 Arachis hypogaea HOM05D002737 ORTHO05D005828 3.8e-06 56.2 44 59.1


User provided reference genes

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