Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 4.7e-48 194.1 94 100.0
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 1.2e-43 179.5 94 91.5
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 6.0e-43 177.2 94 90.4
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 1.0e-42 176.4 94 87.2
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 1.0e-42 176.4 94 86.2
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 1.7e-42 175.6 94 88.3
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.7e-42 175.6 94 86.2
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 3.0e-42 174.9 94 85.1
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 3.9e-42 174.5 94 87.2
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 3.9e-42 174.5 94 85.1
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 5.1e-42 174.1 94 85.1
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 6.6e-42 173.7 94 85.1
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 6.6e-42 173.7 94 85.1
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 6.6e-42 173.7 93 86.0
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 6.6e-42 173.7 94 85.1
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 8.7e-42 173.3 94 86.2
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 8.7e-42 173.3 92 88.0
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 8.7e-42 173.3 94 85.1
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 1.1e-41 172.9 94 85.1
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.1e-41 172.9 94 85.1
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 1.5e-41 172.6 94 84.0
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 1.9e-41 172.2 92 87.0
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 1.9e-41 172.2 94 84.0
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 2.5e-41 171.8 94 85.1
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 2.5e-41 171.8 94 85.1
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 2.5e-41 171.8 94 85.1
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 2.5e-41 171.8 94 85.1
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 3.3e-41 171.4 93 87.1
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 4.3e-41 171.0 94 85.1
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 5.6e-41 170.6 94 85.1
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 5.6e-41 170.6 94 84.0
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 5.6e-41 170.6 98 84.7
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 9.6e-41 169.9 92 85.9
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 9.6e-41 169.9 92 85.9
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 9.6e-41 169.9 92 85.9
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.3e-40 169.5 94 85.1
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.3e-40 169.5 94 85.1
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.3e-40 169.5 94 85.1
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 1.6e-40 169.1 94 83.0
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.1e-40 168.7 92 84.8
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 2.1e-40 168.7 94 84.0
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 2.8e-40 168.3 94 84.0
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 2.8e-40 168.3 103 79.6
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 2.8e-40 168.3 94 85.1
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 3.6e-40 167.9 92 83.7
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 4.8e-40 167.5 94 81.9
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 8.1e-40 166.8 94 80.9
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 1.1e-39 166.4 94 83.0
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.1e-39 166.4 92 84.8
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.4e-39 166.0 94 80.9
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.4e-39 166.0 93 82.8
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 1.4e-39 166.0 94 81.9
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 3.1e-39 164.9 92 82.6
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 5.3e-39 164.1 92 81.5
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 9.0e-39 163.3 94 80.9
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 1.2e-38 162.9 94 79.8
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 1.2e-38 162.9 92 81.5
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 1.2e-38 162.9 92 81.5
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 1.2e-38 162.9 94 79.8
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 2.6e-38 161.8 94 78.7
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 2.6e-38 161.8 94 78.7
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 3.4e-38 161.4 94 79.8
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 3.4e-38 161.4 93 79.6
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 5.8e-38 160.6 92 80.4
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 7.6e-38 160.2 94 77.7
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 1.3e-37 159.5 94 78.7
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 1.7e-37 159.1 94 77.7
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 1.7e-37 159.1 93 75.3
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 2.2e-37 158.7 94 75.5
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 3.8e-37 157.9 93 76.3
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 3.8e-37 157.9 94 78.7
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 4.9e-37 157.5 93 76.3
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 4.9e-37 157.5 93 76.3
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 8.4e-37 156.8 92 76.1
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 8.4e-37 156.8 105 72.4
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 1.4e-36 156.0 93 73.1
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 1.9e-36 155.6 93 74.2
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 1.9e-36 155.6 93 74.2
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 1.9e-36 155.6 93 74.2
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 1.9e-36 155.6 93 74.2
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 1.9e-36 155.6 93 74.2
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 2.4e-36 155.2 92 75.0
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 1.6e-35 152.5 94 74.5
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 2.1e-35 152.1 94 75.5
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 2.7e-35 151.8 92 75.0
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 3.5e-35 151.4 92 71.7
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 3.5e-35 151.4 93 71.0
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 6.0e-35 150.6 92 71.7
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 6.0e-35 150.6 92 71.7
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 1.3e-34 149.4 92 77.2
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 1.8e-34 149.1 91 73.6
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 2.3e-34 148.7 92 70.7
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 3.0e-34 148.3 83 83.1
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 1.1e-33 146.4 92 68.5
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 2.5e-33 145.2 94 68.1
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 1.6e-32 142.5 92 68.5
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 6.9e-31 137.1 92 65.2
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.2e-30 136.3 91 65.9
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 7.6e-30 133.7 71 85.9
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 2.5e-28 128.6 91 62.6
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 7.1e-28 127.1 82 69.5
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 7.1e-28 127.1 75 82.7
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 7.1e-28 127.1 92 58.7
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 2.1e-27 125.6 65 90.8
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 2.7e-27 125.2 65 92.3
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 3.5e-27 124.8 92 59.8
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 1.0e-26 123.2 92 53.3
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 3.9e-26 121.3 92 56.5
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 5.1e-26 120.9 64 89.1
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 7.4e-25 117.1 64 85.9
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 2.1e-24 115.5 69 73.9
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 2.1e-24 115.5 66 80.3
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 1.4e-23 112.8 76 63.2
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 2.4e-23 112.1 64 79.7
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 5.3e-23 110.9 64 81.2
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 5.3e-23 110.9 65 80.0
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 3.4e-22 108.2 65 75.4
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 4.5e-22 107.8 64 82.8
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 5.8e-22 107.5 92 47.8
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 8.4e-21 103.6 75 72.0
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 1.8e-18 95.9 94 57.4
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 2.2e-13 79.0 54 66.7
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 3.0e-10 68.6 40 80.0
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 9.7e-09 63.5 42 71.4


User provided reference genes

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