Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 3.7e-244 847.8 442 100.0
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 4.7e-146 521.9 416 68.3
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 3.0e-145 519.2 441 65.8
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 2.0e-144 516.5 416 66.8
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 7.7e-141 504.6 416 65.9
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.3e-137 493.0 416 64.4
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.3e-135 487.3 448 60.3
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.3e-135 487.3 447 61.1
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 3.7e-135 485.7 416 63.7
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 6.3e-135 485.0 450 60.0
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 6.3e-135 485.0 456 59.9
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 5.9e-133 478.4 421 64.4
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 2.9e-132 476.1 417 64.0
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 8.6e-132 474.6 416 63.9
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 4.2e-131 472.2 456 60.7
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 1.6e-130 470.3 418 66.3
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 6.1e-130 468.4 414 61.8
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 2.8e-127 459.5 450 58.2
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 8.3e-127 458.0 414 60.6
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 2.0e-125 453.4 418 61.5
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 3.5e-125 452.6 440 59.3
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.5e-123 447.2 441 59.9
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 1.9e-123 446.8 417 62.8
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.4e-121 440.7 450 55.6
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 1.8e-121 440.3 423 63.4
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 7.5e-120 434.9 421 59.9
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 1.7e-119 433.7 424 58.7
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 2.2e-119 433.3 437 57.9
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 2.9e-119 433.0 442 59.0
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 3.7e-119 432.6 417 58.5
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 8.3e-119 431.4 434 58.5
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 4.6e-117 425.6 366 63.4
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 2.3e-116 423.3 427 56.7
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 3.9e-116 422.5 429 55.9
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 6.6e-116 421.8 454 58.1
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 6.6e-116 421.8 447 58.6
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 1.9e-115 420.2 417 61.2
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 7.3e-115 418.3 428 56.3
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 4.0e-113 412.5 429 55.2
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 2.6e-112 409.8 490 54.3
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 7.5e-112 408.3 355 64.5
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 1.9e-110 403.7 440 53.2
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 4.1e-110 402.5 450 52.7
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 9.2e-110 401.4 421 54.6
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 1.6e-109 400.6 447 52.3
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 2.7e-109 399.8 444 53.2
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 6.0e-109 398.7 439 54.4
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 3.0e-108 396.4 439 54.0
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 2.5e-107 393.3 442 53.6
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 1.6e-106 390.6 413 55.0
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 2.3e-105 386.7 495 49.3
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 8.9e-105 384.8 415 55.2
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 2.4e-102 376.7 416 56.7
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 7.1e-102 375.2 449 50.6
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 1.2e-101 374.4 313 63.6
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.6e-101 374.0 429 56.6
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 1.7e-100 370.5 440 50.2
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 1.5e-99 367.5 314 62.7
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 5.6e-99 365.5 417 56.4
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 8.1e-98 361.7 390 53.3
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 2.0e-96 357.1 662 39.1
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 9.9e-96 354.8 290 66.9
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 1.3e-95 354.4 458 49.3
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 2.2e-95 353.6 444 48.6
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 2.9e-95 353.2 341 58.7
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 3.8e-95 352.8 424 53.3
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 1.1e-94 351.3 463 47.9
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 1.2e-93 347.8 430 49.1
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 1.6e-93 347.4 445 49.0
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 7.3e-91 338.6 455 51.0
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 3.6e-90 336.3 431 48.3
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 1.4e-89 334.3 338 58.6
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 2.4e-89 333.6 414 51.9
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 3.4e-88 329.7 419 48.9
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 3.2e-86 323.2 264 68.2
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 3.2e-86 323.2 301 58.8
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 1.2e-85 321.2 390 50.5
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 1.3e-84 317.8 297 61.3
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 2.5e-83 313.5 354 54.2
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 6.9e-81 305.4 457 45.7
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.5e-80 304.3 326 54.6
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 1.9e-78 297.4 386 48.2
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 2.1e-77 293.9 449 42.3
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 6.0e-77 292.4 412 48.8
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 2.8e-74 283.5 417 45.8
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.0e-71 275.0 418 44.7
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 2.9e-71 273.5 331 52.0
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 5.5e-70 269.2 355 50.1
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 1.8e-68 264.2 430 46.0
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 8.7e-68 261.9 340 49.4
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 1.5e-67 261.2 261 55.6
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 3.3e-67 260.0 361 49.6
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 3.3e-67 260.0 419 43.9
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 4.3e-67 259.6 336 52.1
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 4.8e-66 256.1 361 46.0
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 2.0e-64 250.8 330 49.4
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 3.1e-57 226.9 417 39.3
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 1.5e-56 224.6 384 42.4
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 3.2e-54 216.9 296 51.0
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 3.2e-54 216.9 275 51.3
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 6.5e-47 192.6 418 38.8
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 4.7e-45 186.4 372 38.7
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 4.7e-45 186.4 421 37.8
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 1.0e-44 185.3 419 37.2
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 3.0e-44 183.7 411 36.3
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 8.8e-44 182.2 419 38.7
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 4.8e-42 176.4 200 53.5
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 6.3e-42 176.0 418 35.9
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 1.4e-41 174.9 418 36.4
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 1.8e-41 174.5 334 39.8
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 2.4e-41 174.1 418 36.1
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 3.1e-41 173.7 426 35.7
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 1.7e-39 167.9 353 38.5
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 6.5e-39 166.0 417 35.5
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 1.1e-38 165.2 418 35.4
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 3.2e-38 163.7 411 35.8
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 2.7e-37 160.6 419 35.3
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 1.4e-36 158.3 308 40.6
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 2.3e-36 157.5 409 35.7
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 2.0e-35 154.5 319 37.3
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 9.7e-35 152.1 417 34.5
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 3.5e-32 143.7 351 34.2
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 1.8e-28 131.3 122 59.8
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 1.3e-26 125.2 281 36.3
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 1.0e-23 115.5 204 45.1
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 8.5e-23 112.5 190 43.2
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 1.5e-22 111.7 303 35.3
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 2.7e-21 107.5 303 33.7
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 4.7e-21 106.7 130 50.8
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.0e-20 105.5 279 34.8
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 1.2e-19 102.1 372 32.0
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 2.2e-18 97.8 101 55.4
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 2.4e-17 94.4 123 46.3
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 3.3e-14 84.0 180 36.1
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 9.5e-14 82.4 180 36.7
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 1.2e-13 82.0 89 50.6
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 6.1e-13 79.7 239 32.2
CANSAT80G2239 Cannabis sativa HOM05D002346 ORTHO05D002452 1.7e-07 61.6 204 29.9
Dinv07115 Davidia involucrata HOM05D005141 ORTHO05D030953 3.0e-07 60.8 88 50.0
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 8.6e-07 59.3 138 34.8
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 8.6e-07 59.3 138 34.8


User provided reference genes

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