Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 4.4e-234 814.7 553 100.0
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 4.4e-61 240.0 202 71.3
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.8e-60 236.9 263 56.3
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 6.4e-60 236.1 202 67.3
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 1.1e-59 235.3 201 65.7
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 1.9e-59 234.6 202 65.8
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 7.1e-59 232.6 198 69.7
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 9.3e-59 232.3 641 38.8
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 6.0e-58 229.6 337 52.8
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 1.7e-57 228.0 201 64.2
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 2.3e-57 227.6 200 65.0
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 2.5e-56 224.2 252 53.6
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 5.6e-56 223.0 198 63.1
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 7.3e-56 222.6 201 63.2
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 1.3e-55 221.9 196 60.7
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 3.6e-55 220.3 152 75.7
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 3.6e-55 220.3 199 63.8
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 4.8e-55 219.9 202 65.8
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 6.2e-55 219.5 198 66.2
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 8.1e-55 219.2 171 70.8
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 4.0e-54 216.9 200 66.0
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 4.0e-54 216.9 337 47.2
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.2e-53 215.3 187 65.8
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 1.5e-53 214.9 204 60.8
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 3.4e-53 213.8 201 62.2
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 3.4e-53 213.8 261 50.2
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.7e-52 211.5 202 61.9
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 2.2e-52 211.1 332 47.3
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 3.8e-52 210.3 147 74.8
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.9e-52 209.9 202 62.9
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.9e-52 209.9 202 62.9
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.4e-51 208.4 201 59.7
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.9e-51 208.0 202 62.4
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 2.4e-51 207.6 334 52.1
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 4.2e-51 206.8 202 62.4
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.2e-51 206.8 202 62.4
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 5.4e-51 206.5 198 61.6
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.6e-50 204.9 605 41.2
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.6e-50 204.9 197 59.4
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.6e-50 204.9 197 59.4
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 4.6e-50 203.4 172 67.4
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 4.6e-50 203.4 260 50.0
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 7.9e-50 202.6 200 60.5
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.0e-49 200.7 340 47.4
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.9e-49 200.3 202 60.9
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 5.1e-49 199.9 777 34.2
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.1e-48 198.7 150 69.3
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.1e-48 198.7 197 57.9
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.1e-48 198.7 120 85.8
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 1.5e-48 198.4 290 49.3
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.5e-48 198.4 192 63.0
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 1.9e-48 198.0 201 57.2
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 3.3e-48 197.2 152 69.1
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 4.3e-48 196.8 352 46.9
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 9.6e-48 195.7 146 70.5
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.3e-47 195.3 187 61.0
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 2.8e-47 194.1 178 60.7
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 2.8e-47 194.1 213 55.4
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 2.8e-47 194.1 213 55.4
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 3.6e-47 193.7 553 43.2
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 3.6e-47 193.7 205 59.5
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 4.8e-47 193.4 198 58.6
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 6.2e-47 193.0 197 57.4
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 8.1e-47 192.6 170 65.9
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.4e-46 191.8 248 48.4
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 3.1e-46 190.7 198 60.1
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 4.0e-46 190.3 187 59.4
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 5.3e-46 189.9 198 55.6
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 5.3e-46 189.9 615 33.5
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 6.9e-46 189.5 201 56.7
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 2.0e-45 188.0 147 70.7
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 2.6e-45 187.6 172 64.0
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 3.4e-45 187.2 233 50.6
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.5e-45 186.8 210 56.2
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.8e-45 186.4 210 55.7
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 5.8e-45 186.4 157 66.2
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 9.9e-45 185.7 210 56.2
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 9.9e-45 185.7 201 55.2
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 1.7e-44 184.9 369 42.3
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 2.4e-43 181.0 193 57.5
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 2.4e-43 181.0 147 68.0
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 4.2e-43 180.3 149 65.1
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 5.5e-43 179.9 198 56.6
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.6e-42 178.3 207 55.1
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.6e-42 178.3 349 40.4
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 1.6e-42 178.3 149 65.1
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 6.0e-42 176.4 276 47.5
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 6.0e-42 176.4 368 44.0
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 1.0e-41 175.6 128 70.3
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.8e-41 174.9 153 64.7
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 5.1e-41 173.3 120 76.7
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 8.7e-41 172.6 251 49.4
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.5e-40 171.8 193 54.9
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 2.5e-40 171.0 119 73.1
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 3.3e-40 170.6 620 36.1
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.3e-40 170.6 153 63.4
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 7.4e-40 169.5 103 81.6
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 7.4e-40 169.5 111 78.4
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 2.1e-39 167.9 113 76.1
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 3.7e-39 167.2 108 77.8
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 8.1e-39 166.0 103 79.6
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.1e-38 165.6 133 66.2
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.8e-38 164.9 114 78.1
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 2.6e-37 161.0 552 46.2
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 5.8e-37 159.8 148 60.8
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 2.9e-36 157.5 166 56.0
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 2.5e-35 154.5 146 54.8
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 3.2e-35 154.1 634 40.2
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 4.2e-35 153.7 166 52.4
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 7.9e-34 149.4 146 53.4
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 6.7e-33 146.4 154 58.4
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 6.7e-33 146.4 550 37.6
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 6.7e-33 146.4 96 80.2
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 8.7e-33 146.0 585 39.1
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 1.5e-32 145.2 91 79.1
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 5.7e-32 143.3 278 39.2
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 7.4e-32 142.9 192 50.0
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 4.8e-31 140.2 145 56.6
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.8e-31 140.2 133 61.7
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 4.8e-31 140.2 90 77.8
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 2.4e-30 137.9 201 48.8
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 5.3e-30 136.7 149 53.7
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 5.3e-30 136.7 149 53.7
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.0e-28 132.5 117 63.2
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.1e-27 129.0 81 79.0
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 7.2e-27 126.3 208 43.8
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 3.0e-25 120.9 110 59.1
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 5.1e-25 120.2 110 60.9
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.9e-24 118.2 110 60.0
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 7.4e-24 116.3 102 54.9
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 2.2e-23 114.8 104 61.5
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.8e-23 114.4 122 50.8
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 3.7e-23 114.0 105 58.1
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 4.1e-22 110.5 123 53.7
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 4.1e-22 110.5 104 56.7
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 6.9e-22 109.8 138 50.0
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 6.9e-22 109.8 101 60.4
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 1.2e-21 109.0 113 54.0
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 1.5e-21 108.6 113 56.6
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 2.0e-21 108.2 107 52.3
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 2.0e-21 108.2 109 54.1
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 2.6e-21 107.8 104 53.8
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 3.4e-21 107.5 101 56.4
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.9e-19 101.7 153 47.7
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 3.2e-19 100.9 272 41.2
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 5.5e-19 100.1 172 38.4
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 3.0e-17 94.4 106 46.2
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 5.1e-17 93.6 147 44.9
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 8.8e-17 92.8 111 45.9
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.5e-16 92.0 142 40.1
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 9.7e-16 89.4 614 30.3
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 2.8e-15 87.8 66 74.2
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 4.8e-15 87.0 100 45.0
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 6.3e-15 86.7 53 77.4
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 1.1e-14 85.9 110 50.0
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 2.0e-13 81.6 146 34.9
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 2.0e-13 81.6 49 81.6
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 3.4e-13 80.9 83 57.8
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 5.0e-12 77.0 182 36.3
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 3.2e-11 74.3 67 52.2
TAR626G1323 Trochodendron aralioides HOM05D004041 ORTHO05D004564 2.1e-10 71.6 89 52.8
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 5.2e-09 67.0 67 58.2
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 6.7e-09 66.6 154 38.3
TAR626G1378 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.5e-08 65.5 121 47.9
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 1.1e-06 59.3 64 45.3
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 7.0e-06 56.6 45 57.8


User provided reference genes

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