Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 0.0e+00 1742.6 885 100.0
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.8e-205 720.3 903 48.6
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 9.9e-196 688.0 866 46.3
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 4.6e-193 679.1 866 47.5
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 3.9e-192 676.0 866 46.9
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 8.7e-184 648.3 869 45.8
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 2.4e-178 630.2 861 45.6
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 5.6e-175 619.0 868 43.7
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.7e-171 607.4 743 48.7
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 5.4e-170 602.4 861 44.7
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 3.9e-168 596.3 867 43.3
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 5.6e-167 592.4 895 41.6
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 9.0e-165 585.1 861 42.6
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 6.0e-161 572.4 611 52.5
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.3e-158 564.7 845 42.1
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 2.4e-157 560.5 856 42.8
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.6e-156 557.0 778 44.2
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 1.9e-154 550.8 862 41.3
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 7.9e-153 545.4 854 42.7
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 8.7e-152 542.0 850 41.2
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.1e-146 525.0 856 40.0
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.9e-146 524.2 859 40.2
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 1.9e-146 524.2 846 40.9
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 5.5e-146 522.7 856 40.0
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 7.2e-146 522.3 979 38.3
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.8e-144 517.7 862 40.0
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 4.5e-140 503.1 859 40.3
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.3e-139 501.5 861 39.3
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.5e-138 497.3 857 39.7
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 8.8e-136 488.8 869 38.4
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 2.0e-127 461.1 876 38.1
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 7.5e-127 459.1 845 37.6
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 7.0e-125 452.6 864 39.5
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 5.2e-120 436.4 851 36.9
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 2.8e-118 430.6 866 37.6
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 1.8e-117 427.9 873 37.1
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 4.1e-117 426.8 824 36.3
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.2e-116 425.2 864 36.3
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 7.7e-116 422.5 832 35.8
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.2e-114 416.8 863 35.7
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.1e-113 414.5 865 35.8
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.1e-113 414.5 863 36.0
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.7e-113 414.1 856 36.4
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 8.0e-113 412.5 890 35.2
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 1.0e-112 412.1 715 38.2
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.0e-112 410.6 867 36.2
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 3.0e-112 410.6 832 36.1
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 6.8e-112 409.5 878 36.3
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 3.4e-111 407.1 875 35.8
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 4.4e-111 406.8 872 35.7
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 8.3e-110 402.5 861 35.7
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 5.9e-108 396.4 871 33.6
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 7.7e-108 396.0 845 36.4
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 2.3e-107 394.4 841 35.1
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 5.0e-107 393.3 846 36.4
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 2.5e-106 391.0 886 35.3
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 5.6e-106 389.8 846 35.0
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 1.6e-105 388.3 838 35.8
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 9.8e-103 379.0 823 33.7
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 4.6e-100 370.2 875 34.7
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 7.8e-100 369.4 829 33.5
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 6.2e-97 359.8 819 34.3
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 6.2e-97 359.8 845 32.7
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 1.4e-96 358.6 758 35.6
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 3.4e-95 354.0 862 32.7
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.9e-93 348.2 849 32.7
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 9.2e-93 345.9 853 33.3
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 6.6e-91 339.7 862 32.3
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 1.2e-89 335.5 817 32.8
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 3.6e-89 334.0 733 35.1
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 4.7e-89 333.6 862 31.1
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 3.1e-88 330.9 745 34.9
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 4.9e-86 323.6 839 31.8
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 2.1e-84 318.2 847 31.2
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 5.1e-83 313.5 865 31.3
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 9.5e-82 309.3 871 29.6
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 6.2e-81 306.6 710 33.2
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 6.8e-80 303.1 840 30.2
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 6.8e-80 303.1 866 31.1
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 8.4e-78 296.2 732 32.4
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 1.4e-77 295.4 866 30.5
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 7.1e-77 293.1 843 29.7
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 1.6e-76 292.0 891 30.5
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 6.6e-75 286.6 868 31.6
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 3.3e-74 284.3 874 31.0
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 2.1e-73 281.6 865 30.3
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 3.6e-73 280.8 864 29.4
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 6.2e-73 280.0 796 29.5
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 1.2e-71 275.8 860 29.5
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 4.4e-71 273.9 827 31.1
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 9.9e-71 272.7 734 31.9
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.3e-70 272.3 427 40.0
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.3e-70 272.3 427 40.0
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 1.3e-70 272.3 865 29.8
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.1e-69 269.2 427 39.8
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 2.1e-68 265.0 865 29.4
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 2.7e-68 264.6 858 27.9
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 5.1e-67 260.4 865 29.8
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 5.1e-67 260.4 909 28.9
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 8.7e-67 259.6 865 29.8
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 9.0e-64 249.6 834 28.8
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 9.0e-64 249.6 735 30.1
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 6.4e-62 243.4 858 27.7
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 1.7e-59 235.3 792 29.4
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 1.7e-59 235.3 771 27.8
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.9e-58 231.9 708 29.1
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 5.6e-58 230.3 708 29.2
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 8.4e-54 216.5 236 51.3
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 1.1e-48 199.5 592 30.1
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 4.3e-42 177.6 307 36.5
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 1.3e-41 176.0 514 31.3
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 8.2e-41 173.3 287 38.7
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 1.2e-39 169.5 475 30.1
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 2.5e-37 161.8 498 32.3
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 7.2e-37 160.2 803 24.9
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 8.7e-35 153.3 768 25.5
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 1.5e-34 152.5 401 32.7
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.4e-32 146.0 373 28.2
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 1.3e-30 139.4 174 46.0
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 2.0e-23 115.5 335 30.4
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 3.8e-22 111.3 334 30.2
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 2.7e-20 105.1 114 43.9
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 1.0e-19 103.2 240 34.6
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 2.3e-19 102.1 336 28.6
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 5.3e-16 90.9 139 36.0
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 5.0e-14 84.3 402 24.1
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 5.5e-13 80.9 107 44.9
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 7.2e-13 80.5 229 28.4
Aqoxy2G01760 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 1.6e-07 62.8 86 40.7
Aqoxy7G00167 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 5.9e-07 60.8 92 39.1
Aqoxy7G00171 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 5.9e-07 60.8 92 39.1
Aqoxy88s005 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 5.9e-07 60.8 92 39.1
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 5.9e-07 60.8 202 31.7


User provided reference genes

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