Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 1.0e-165 586.6 292 100.0
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 4.8e-107 391.7 274 72.3
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 5.2e-101 371.7 261 69.7
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 3.3e-100 369.0 267 70.4
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 9.7e-100 367.5 289 65.4
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 2.2e-99 366.3 256 70.3
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 7.0e-98 361.3 297 62.3
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 3.5e-97 359.0 275 65.1
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 7.7e-97 357.8 277 65.3
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 1.3e-96 357.1 275 66.5
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 6.5e-96 354.8 250 70.4
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 1.5e-95 353.6 279 63.8
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 2.5e-95 352.8 274 63.9
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 3.6e-94 349.0 277 62.5
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.2e-92 344.0 242 71.5
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 2.6e-92 342.8 284 60.6
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 1.3e-91 340.5 269 62.8
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 2.2e-91 339.7 277 62.1
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 2.8e-91 339.3 274 62.4
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 2.8e-91 339.3 276 62.0
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 2.8e-91 339.3 259 65.3
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 1.4e-90 337.0 255 64.7
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 3.1e-90 335.9 266 62.0
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 7.0e-90 334.7 257 65.4
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 7.0e-90 334.7 286 60.5
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 7.0e-90 334.7 274 62.0
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 9.1e-90 334.3 292 58.6
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 1.6e-89 333.6 277 62.5
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 2.7e-89 332.8 256 66.0
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 3.5e-89 332.4 278 62.6
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 4.5e-89 332.0 274 60.9
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 7.7e-89 331.3 293 57.7
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.7e-88 330.1 287 58.2
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.9e-88 329.3 285 59.6
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 3.8e-88 328.9 280 58.6
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 3.8e-88 328.9 285 59.3
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 8.5e-88 327.8 264 63.3
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 1.1e-87 327.4 267 61.4
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 2.5e-87 326.2 265 61.5
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 2.5e-87 326.2 278 60.8
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 3.2e-87 325.9 272 61.4
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 5.5e-87 325.1 250 66.0
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 1.2e-86 323.9 257 60.3
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 1.2e-86 323.9 268 64.2
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 1.2e-86 323.9 247 65.6
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 1.6e-86 323.6 276 58.3
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 2.7e-86 322.8 258 62.4
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 2.7e-86 322.8 273 59.3
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 3.6e-86 322.4 272 59.9
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 3.6e-86 322.4 268 60.8
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 3.6e-86 322.4 268 60.8
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 4.7e-86 322.0 268 59.3
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 6.1e-86 321.6 257 61.1
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 8.0e-86 321.2 258 60.9
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 1.0e-85 320.9 267 61.8
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 1.8e-85 320.1 274 58.8
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 2.3e-85 319.7 269 58.7
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 4.0e-85 318.9 272 59.2
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 5.2e-85 318.5 280 61.8
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 8.8e-85 317.8 268 59.0
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 1.5e-84 317.0 303 56.4
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 3.4e-84 315.8 258 60.9
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 5.7e-84 315.1 267 59.2
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 2.2e-83 313.2 290 58.3
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 3.1e-82 309.3 231 64.9
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 7.7e-81 304.7 258 59.3
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.0e-80 304.3 229 69.9
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 2.9e-80 302.8 276 56.2
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 3.8e-80 302.4 261 59.8
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 2.5e-79 299.7 255 60.0
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 9.5e-79 297.7 276 58.3
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.4e-77 293.9 275 58.9
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 1.4e-77 293.9 257 60.3
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 4.4e-76 288.9 247 58.3
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 8.3e-75 284.6 260 56.9
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 3.5e-73 279.3 265 57.0
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 4.6e-73 278.9 256 57.4
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 1.3e-72 277.3 244 57.4
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 3.9e-72 275.8 396 40.7
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 7.3e-71 271.6 256 55.1
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 7.3e-71 271.6 279 50.5
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 8.0e-70 268.1 207 65.7
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 8.0e-70 268.1 207 64.7
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 5.2e-69 265.4 225 60.4
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 1.5e-68 263.8 274 48.9
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 7.5e-68 261.5 225 63.1
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 6.4e-67 258.5 202 61.4
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 1.3e-64 250.8 244 53.3
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 4.3e-63 245.7 253 49.4
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 8.1e-62 241.5 292 49.0
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 8.1e-62 241.5 292 49.0
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 6.4e-59 231.9 270 47.8
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 5.4e-58 228.8 316 40.2
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 4.6e-57 225.7 265 49.4
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 3.0e-56 223.0 156 67.3
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 6.8e-53 211.8 156 68.6
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 7.6e-52 208.4 196 57.7
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 4.9e-51 205.7 164 60.4
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 1.9e-50 203.8 247 46.2
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 3.0e-48 196.4 164 58.5
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 8.6e-48 194.9 181 54.7
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 1.5e-44 184.1 163 57.7
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 6.4e-43 178.7 151 57.6
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 6.4e-43 178.7 150 58.0
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 1.9e-42 177.2 144 59.7
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 5.4e-42 175.6 151 57.0
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 5.4e-42 175.6 151 57.0
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.7e-40 170.6 221 44.8
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 1.7e-40 170.6 127 64.6
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 4.3e-39 166.0 116 68.1
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 5.6e-39 165.6 131 61.1
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 1.6e-38 164.1 131 58.8
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 3.1e-37 159.8 140 57.1
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 6.7e-32 142.1 292 34.2
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 4.8e-30 136.0 95 67.4
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 1.2e-28 131.3 247 34.4
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 2.0e-28 130.6 111 57.7
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 3.4e-28 129.8 109 60.6
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 5.8e-28 129.0 149 46.3
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 1.3e-27 127.9 122 52.5
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 5.5e-26 122.5 101 58.4
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 1.5e-23 114.4 118 51.7
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 4.3e-23 112.8 301 28.2
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 9.6e-23 111.7 78 67.9
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 8.2e-22 108.6 97 55.7
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-21 108.2 169 41.4
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 1.1e-21 108.2 102 50.0
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 2.7e-17 93.6 60 73.3
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.7e-17 93.6 76 56.6
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 2.3e-16 90.5 61 68.9
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.3e-11 74.7 75 48.0
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 2.1e-09 67.4 47 61.7
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 3.0e-08 63.5 41 70.7


User provided reference genes

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