Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 1.2e-197 693.0 342 100.0
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 8.4e-119 431.0 416 57.9
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 1.3e-111 407.1 413 51.6
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 6.7e-108 394.8 395 55.7
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 1.3e-106 390.6 426 51.2
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 1.6e-106 390.2 426 50.9
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 2.8e-106 389.4 427 51.1
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 8.2e-106 387.9 411 49.1
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 2.4e-105 386.3 426 50.7
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.1e-105 386.0 417 51.6
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 6.9e-105 384.8 426 50.0
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.0e-103 380.9 413 49.9
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 1.3e-103 380.6 382 54.7
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 4.9e-103 378.6 413 49.6
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 4.9e-103 378.6 413 49.2
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.2e-101 374.0 418 50.0
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 1.6e-101 373.6 391 50.6
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.1e-101 373.2 418 49.8
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 6.0e-101 371.7 417 50.1
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 1.0e-100 370.9 424 49.1
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 1.8e-100 370.2 427 48.7
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 5.1e-100 368.6 425 48.9
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 6.7e-100 368.2 420 49.0
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.5e-99 367.1 425 48.9
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 1.9e-99 366.7 416 50.0
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 2.5e-99 366.3 419 50.8
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 2.5e-99 366.3 413 48.4
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 3.3e-99 365.9 426 49.3
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 7.4e-99 364.8 425 48.7
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 9.7e-99 364.4 426 47.9
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 3.7e-98 362.5 425 48.7
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 3.7e-98 362.5 424 48.1
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 9.0e-97 357.8 408 49.3
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 5.9e-96 355.1 418 47.6
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.2e-95 353.2 388 50.8
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 3.8e-95 352.4 388 50.3
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 8.5e-95 351.3 425 47.1
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 3.2e-94 349.4 414 46.9
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 9.3e-94 347.8 428 46.5
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 2.1e-93 346.7 426 47.4
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.1e-93 345.1 419 47.3
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 7.9e-93 344.7 387 49.1
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 7.9e-93 344.7 428 47.7
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 1.0e-92 344.4 413 46.5
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 1.4e-92 344.0 420 47.1
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 3.0e-92 342.8 415 45.5
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 8.8e-92 341.3 419 45.6
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 1.1e-91 340.9 429 46.6
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 3.3e-91 339.3 386 49.2
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 4.3e-91 339.0 380 49.2
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 5.7e-91 338.6 413 46.5
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 1.1e-89 334.3 404 46.0
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 5.3e-89 332.0 413 42.9
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 6.9e-89 331.6 370 48.9
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 9.1e-89 331.3 413 45.8
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 5.9e-88 328.6 383 46.7
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 5.9e-88 328.6 344 52.6
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-87 327.4 402 46.8
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.4e-86 323.9 387 47.8
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 1.4e-86 323.9 401 47.9
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 3.2e-86 322.8 382 45.5
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 5.5e-86 322.0 418 42.3
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 1.6e-85 320.5 428 43.9
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 2.7e-85 319.7 428 44.2
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 1.8e-84 317.0 409 41.6
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.5e-83 313.9 424 44.3
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 5.7e-83 312.0 402 44.5
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 9.7e-83 311.2 424 43.9
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 1.7e-82 310.5 396 42.4
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 2.8e-82 309.7 439 43.1
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 1.2e-80 304.3 427 43.1
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 3.4e-80 302.8 373 44.2
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 5.9e-80 302.0 363 47.1
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 7.7e-80 301.6 382 45.3
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 1.0e-79 301.2 382 45.3
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.7e-79 300.4 398 45.2
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 1.7e-79 300.4 382 44.0
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 5.0e-79 298.9 373 44.2
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 6.5e-79 298.5 388 43.8
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 8.5e-79 298.1 373 44.2
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 7.2e-78 295.0 382 44.2
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 1.6e-77 293.9 382 44.0
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 2.7e-77 293.1 382 44.2
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 2.7e-77 293.1 383 43.6
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 4.7e-77 292.4 381 43.3
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 6.1e-77 292.0 382 43.2
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 3.0e-76 289.7 404 40.6
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 5.2e-76 288.9 360 47.2
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 6.7e-76 288.5 361 47.9
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 8.8e-76 288.1 390 45.1
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 2.6e-75 286.6 393 45.3
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 3.3e-75 286.2 403 43.4
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 4.4e-75 285.8 392 43.9
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 5.7e-75 285.4 390 44.6
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 9.7e-75 284.6 393 42.0
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 2.2e-74 283.5 265 57.0
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 2.4e-73 280.0 206 65.0
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 5.3e-73 278.9 376 44.7
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 2.0e-72 276.9 381 43.8
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 2.6e-72 276.6 229 62.9
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 1.7e-71 273.9 230 59.6
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 1.9e-70 270.4 175 75.4
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 2.3e-68 263.5 225 57.8
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 5.2e-68 262.3 194 64.4
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 1.3e-66 257.7 227 56.4
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 2.5e-62 243.4 395 39.0
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.2e-62 241.9 226 58.0
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.3e-58 228.4 170 67.1
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 1.0e-55 221.5 251 47.0
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 2.9e-55 219.9 220 52.7
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 2.9e-55 219.9 342 39.5
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 1.6e-53 214.2 179 58.7
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-52 211.1 216 55.6
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.4e-52 211.1 352 38.9
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 5.7e-51 205.7 256 43.0
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 5.2e-44 182.6 360 31.9
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.4e-42 175.6 138 66.7
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 8.3e-42 175.3 412 32.5
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 9.2e-41 171.8 177 55.9
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 2.1e-37 160.6 257 40.9
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 5.8e-35 152.5 283 36.0
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 3.7e-34 149.8 179 48.0
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 5.4e-33 146.0 126 63.5
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 8.6e-31 138.7 107 60.7
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-28 131.3 112 63.4
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 6.8e-28 129.0 241 36.9
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.0e-27 127.5 113 61.9
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.5e-27 125.6 146 51.4
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.7e-23 114.4 250 34.4
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.6e-21 106.7 207 35.7
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 4.4e-19 99.8 181 38.1
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 1.0e-15 88.6 66 59.1
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 1.0e-15 88.6 66 59.1
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 8.1e-13 79.0 91 48.4
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 5.3e-12 76.3 77 44.2
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 3.2e-09 67.0 52 61.5
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 9.3e-09 65.5 86 39.5
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.6e-08 63.2 51 52.9
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.7e-07 61.2 51 52.9


User provided reference genes

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