Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 2.1e-189 665.6 348 100.0
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 4.2e-158 561.6 348 83.0
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 7.2e-158 560.8 348 83.9
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 7.2e-158 560.8 348 83.9
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 9.3e-158 560.5 348 82.8
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 8.7e-156 553.9 347 82.7
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.5e-155 553.1 348 81.9
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 1.1e-153 547.0 348 82.8
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 3.1e-153 545.4 348 81.9
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 6.9e-153 544.3 349 80.5
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 9.0e-153 543.9 348 79.9
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 3.4e-152 542.0 348 80.7
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 4.5e-152 541.6 348 79.9
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.0e-151 540.4 349 80.8
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.7e-151 539.7 348 80.5
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 6.5e-151 537.7 348 79.9
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 6.5e-151 537.7 348 79.9
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 8.5e-151 537.3 347 80.7
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.9e-150 536.2 348 79.0
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 1.6e-149 533.1 348 80.2
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 2.7e-149 532.3 348 78.7
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.6e-149 531.9 348 78.7
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 6.1e-149 531.2 348 79.0
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 1.0e-148 530.4 348 79.9
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 2.3e-148 529.3 349 80.2
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.3e-148 529.3 348 79.3
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 5.1e-148 528.1 354 79.1
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 5.1e-148 528.1 348 79.0
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.1e-147 526.9 348 78.2
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 1.1e-147 526.9 348 80.2
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.1e-147 526.9 348 78.7
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 1.5e-147 526.6 348 79.0
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 1.5e-147 526.6 348 79.0
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 3.3e-147 525.4 348 80.2
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 5.7e-147 524.6 348 79.0
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 5.7e-147 524.6 348 79.9
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 5.7e-147 524.6 349 79.7
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 9.7e-147 523.9 348 77.9
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.7e-146 523.1 348 77.3
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 1.1e-145 520.4 348 78.2
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 1.4e-145 520.0 340 79.4
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 4.1e-145 518.5 349 77.7
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 5.3e-145 518.1 346 77.5
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 1.2e-144 516.9 347 78.1
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 2.6e-144 515.8 349 77.4
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 3.4e-144 515.4 348 77.3
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 7.7e-144 514.2 395 70.9
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.7e-143 513.1 348 77.3
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 3.2e-142 508.8 346 75.1
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 5.5e-142 508.1 346 74.6
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 2.1e-141 506.1 348 76.7
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 2.7e-141 505.8 346 76.6
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 3.6e-141 505.4 346 73.7
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 3.6e-141 505.4 346 74.3
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 4.7e-141 505.0 346 74.3
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 7.9e-141 504.2 346 74.0
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 3.0e-140 502.3 348 77.0
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 6.7e-140 501.1 346 73.7
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 6.7e-140 501.1 346 73.7
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 8.8e-140 500.7 346 73.4
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 1.5e-139 500.0 348 75.9
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 2.0e-139 499.6 346 73.4
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 2.0e-139 499.6 346 73.4
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 2.0e-139 499.6 346 73.4
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 2.6e-139 499.2 346 73.1
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 2.6e-139 499.2 328 78.4
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 5.7e-139 498.0 346 73.1
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 5.7e-139 498.0 368 72.0
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 9.7e-139 497.3 348 74.7
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 1.7e-138 496.5 346 72.5
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.7e-138 496.5 348 76.7
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 2.8e-138 495.7 348 73.3
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 2.8e-138 495.7 418 65.8
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 3.7e-138 495.4 358 71.5
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 6.3e-138 494.6 348 74.1
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 5.3e-137 491.5 350 74.6
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 9.1e-137 490.7 350 74.6
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 1.5e-136 490.0 340 76.8
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 1.5e-136 490.0 348 74.7
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 7.7e-136 487.6 358 70.7
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 1.7e-135 486.5 354 72.6
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 5.0e-135 485.0 348 72.7
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.1e-134 483.8 346 74.3
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.5e-134 483.4 348 71.8
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 3.2e-134 482.3 339 72.0
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 1.2e-133 480.3 348 74.1
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 3.3e-131 472.2 348 74.4
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 3.3e-131 472.2 361 69.3
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 1.3e-130 470.3 339 74.0
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 6.3e-130 468.0 309 76.7
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.8e-127 458.8 316 77.5
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 1.1e-126 457.2 342 68.4
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.5e-126 456.8 311 78.1
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 1.2e-125 453.8 339 69.3
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 2.1e-125 453.0 272 84.2
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 4.8e-122 441.8 311 73.3
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 3.1e-121 439.1 272 80.5
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 7.7e-120 434.5 296 79.4
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 1.9e-118 429.9 399 61.2
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 5.5e-118 428.3 346 66.8
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.2e-117 427.2 348 67.5
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 1.2e-117 427.2 348 67.2
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 3.4e-115 419.1 421 57.5
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 5.0e-111 405.2 293 73.4
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 6.6e-111 404.8 328 68.3
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 3.3e-110 402.5 348 63.2
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.1e-109 399.8 348 62.4
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 2.3e-103 379.8 222 86.5
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 1.4e-100 370.5 346 60.4
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 1.8e-100 370.2 222 82.4
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 1.7e-98 363.6 387 52.7
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 1.5e-91 340.5 253 71.9
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 6.4e-90 335.1 348 56.9
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.5e-88 329.3 204 81.9
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.9e-87 325.9 438 48.6
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.3e-86 322.8 347 55.3
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 1.2e-83 314.3 329 51.4
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 2.4e-76 290.0 252 63.5
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 2.6e-75 286.6 252 59.9
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 2.1e-72 276.9 169 82.8
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 4.3e-70 269.2 203 68.0
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 1.3e-66 257.7 303 45.9
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 4.9e-66 255.8 258 58.1
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.5e-54 217.6 158 67.7
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 5.6e-54 215.7 238 55.5
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 1.6e-53 214.2 144 76.4
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 1.4e-52 211.1 168 69.0
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 1.5e-51 207.6 194 58.2
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 8.7e-47 191.8 343 36.4
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 7.4e-46 188.7 110 88.2
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 8.2e-45 185.3 131 74.0
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 1.3e-42 177.9 323 33.4
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 8.5e-42 175.3 358 33.5
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 1.8e-39 167.5 187 53.5
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 1.8e-39 167.5 317 35.0
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 5.7e-38 162.5 127 71.7
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 1.8e-28 131.0 113 63.7
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 3.1e-28 130.2 74 86.5
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.4e-25 121.3 98 66.3
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 9.7e-22 108.6 73 69.9
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.7e-21 107.8 95 66.3
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 5.3e-20 102.8 109 56.0
MD01G1007700 Malus domestica HOM05D005314 ORTHO05D246798 5.7e-06 56.2 31 87.1


User provided reference genes

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