Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 3.9e-151 538.1 271 100.0
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.7e-77 293.5 273 58.6
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.2e-72 277.3 273 55.3
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 3.3e-70 269.2 270 55.2
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.4e-68 263.8 273 55.7
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 2.4e-68 263.1 276 55.1
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.5e-67 259.2 274 54.0
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.2e-66 256.5 273 51.6
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 6.5e-66 255.0 274 53.6
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.4e-63 247.3 274 52.2
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 3.4e-62 242.7 273 51.6
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 2.8e-61 239.6 273 49.5
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 8.3e-61 238.0 275 49.8
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.1e-60 236.1 261 51.7
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 4.1e-60 235.7 267 49.8
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 2.5e-57 226.5 270 47.8
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.8e-56 223.0 247 50.6
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 2.3e-55 219.9 219 51.1
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 2.3e-55 219.9 307 43.6
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.0e-55 219.5 258 47.7
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.0e-55 219.2 273 48.7
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 6.8e-55 218.4 249 47.4
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.2e-54 217.6 248 47.2
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.0e-54 216.9 259 47.5
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 3.4e-54 216.1 274 47.8
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.4e-54 215.7 257 46.3
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 4.4e-54 215.7 248 47.2
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.2e-53 213.4 242 45.5
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 2.8e-53 213.0 268 45.5
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 4.9e-53 212.2 269 44.2
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 6.3e-53 211.8 246 49.2
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.1e-52 211.1 270 44.8
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.4e-52 209.9 264 43.9
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 7.0e-52 208.4 252 47.6
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 4.5e-51 205.7 249 45.4
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 5.9e-51 205.3 269 45.0
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.0e-50 204.5 257 42.8
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.7e-50 203.8 243 46.9
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.3e-50 203.4 274 47.1
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.3e-50 203.4 262 43.9
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 2.9e-50 203.0 274 42.0
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.0e-50 202.2 282 45.0
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 6.6e-50 201.8 248 45.6
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 8.6e-50 201.4 267 43.8
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 4.3e-49 199.1 270 44.4
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 4.3e-49 199.1 266 42.9
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 2.3e-47 193.4 272 44.1
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 2.3e-47 193.4 247 47.0
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.3e-47 193.4 263 44.1
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 1.2e-46 191.0 246 44.7
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.4e-46 189.5 246 43.1
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.4e-46 189.5 271 41.3
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.4e-46 189.5 271 41.3
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 4.4e-46 189.1 275 43.6
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 5.8e-46 188.7 268 42.2
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 1.7e-45 187.2 269 42.0
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 2.2e-45 186.8 270 41.5
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 6.4e-45 185.3 270 43.0
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.4e-44 184.1 264 41.7
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.4e-44 183.3 243 46.5
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 4.1e-44 182.6 267 40.8
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 4.1e-44 182.6 271 42.4
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 5.4e-44 182.2 246 41.5
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 9.2e-44 181.4 279 41.9
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.6e-43 180.6 261 40.6
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 2.0e-43 180.3 268 38.8
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.7e-43 179.9 274 42.7
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 4.6e-43 179.1 265 41.5
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 7.8e-43 178.3 264 44.7
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 7.8e-43 178.3 257 40.1
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.0e-42 177.9 263 43.3
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.3e-42 177.6 258 43.4
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.3e-42 177.6 279 41.9
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.5e-41 174.1 265 40.0
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.5e-41 173.3 235 44.3
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 3.3e-41 172.9 272 40.1
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 5.6e-41 172.2 270 41.5
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 1.6e-40 170.6 250 40.4
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.1e-39 167.9 262 43.1
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.4e-39 167.5 272 38.6
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.1e-39 166.4 251 43.4
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.1e-39 166.4 251 43.4
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 4.0e-39 166.0 273 39.2
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 6.8e-39 165.2 255 39.2
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 6.8e-39 165.2 224 42.9
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 8.9e-39 164.9 251 43.0
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 8.9e-39 164.9 269 37.2
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.2e-38 164.5 167 50.9
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 2.0e-38 163.7 269 37.5
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.4e-38 162.9 214 41.6
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.4e-38 162.9 214 41.6
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 4.4e-38 162.5 268 36.9
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.2e-37 160.2 219 43.8
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 2.9e-37 159.8 270 38.5
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 4.9e-37 159.1 271 38.7
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 6.4e-37 158.7 268 39.6
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 6.4e-37 158.7 232 39.7
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 8.3e-37 158.3 274 40.9
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.4e-36 157.5 266 36.1
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 3.2e-36 156.4 271 36.5
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 4.1e-36 156.0 263 41.4
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.1e-36 156.0 265 35.8
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.1e-35 153.7 269 37.9
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 2.7e-35 153.3 224 40.6
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.7e-35 153.3 224 40.6
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 4.6e-35 152.5 265 35.5
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 1.0e-34 151.4 243 39.5
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 1.7e-34 150.6 254 37.8
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 2.3e-34 150.2 216 41.7
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 3.0e-34 149.8 249 41.4
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 3.0e-34 149.8 258 37.2
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.9e-34 149.4 273 38.1
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 3.9e-34 149.4 276 38.8
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 8.6e-34 148.3 122 62.3
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.1e-33 147.9 258 36.8
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.1e-33 147.9 140 55.0
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.5e-33 146.7 245 38.4
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 9.5e-33 144.8 247 38.9
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.6e-32 144.1 211 39.3
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.6e-32 144.1 242 38.4
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.8e-32 143.3 189 42.3
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 6.2e-32 142.1 259 37.8
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 8.1e-32 141.7 259 39.0
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.8e-31 140.6 262 39.3
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.0e-31 139.4 123 61.0
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 2.0e-30 137.1 256 34.8
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 6.4e-29 132.1 218 39.4
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.4e-28 131.0 123 52.8
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.4e-28 129.0 269 36.1
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 5.4e-28 129.0 140 45.0
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 6.0e-27 125.6 119 52.9
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 3.9e-26 122.9 267 32.6
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 5.1e-26 122.5 271 34.3
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 8.6e-26 121.7 149 43.6
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 1.9e-25 120.6 160 45.6
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.9e-25 120.6 149 45.0
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 3.3e-25 119.8 271 33.2
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 9.5e-25 118.2 265 33.2
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.6e-24 117.5 264 33.3
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.6e-24 117.5 263 34.2
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.4e-23 114.4 268 32.5
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 2.4e-23 113.6 268 32.5
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 3.1e-23 113.2 266 30.8
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 3.1e-23 113.2 266 30.8
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 4.0e-23 112.8 238 32.8
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 5.2e-23 112.5 157 39.5
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.0e-22 110.5 271 33.2
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 2.0e-22 110.5 262 34.0
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 1.7e-21 107.5 231 31.6
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.7e-21 107.5 231 31.6
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.7e-21 107.5 204 36.8
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 1.9e-20 104.0 272 32.0
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 3.5e-19 99.8 139 38.1
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 6.6e-18 95.5 117 41.0
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 1.4e-15 87.8 261 30.7
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 9.0e-15 85.1 218 33.0
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 2.0e-14 84.0 219 29.2
MELO3C006802.2 Cucumis melo HOM05D000885 ORTHO05D001238 9.6e-09 65.1 66 50.0
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 3.6e-08 63.2 230 26.5
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 3.6e-08 63.2 230 26.5
BcaB06g29645 Brassica carinata HOM05D003538 ORTHO05D018603 5.8e-06 55.8 130 26.9
A02p40920 Brassica napus HOM05D003538 ORTHO05D018603 9.9e-06 55.1 68 35.3
A08p26910 Brassica napus HOM05D003538 ORTHO05D018603 9.9e-06 55.1 68 35.3
C02p02900 Brassica napus HOM05D003538 ORTHO05D018603 9.9e-06 55.1 68 35.3
C04p65130 Brassica napus HOM05D003538 ORTHO05D018603 9.9e-06 55.1 68 35.3


User provided reference genes

Program Settings