Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 3840.0 1971 100.0
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2720.3 1916 73.2
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2701.0 1995 70.4
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2668.3 2011 69.5
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2664.8 1998 68.9
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2631.3 1985 68.4
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2616.6 2069 66.8
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2595.8 1967 69.0
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2590.5 1996 67.9
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2556.2 2005 66.5
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2531.5 1913 68.9
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2523.4 1896 68.3
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2506.9 1993 66.2
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2502.2 1995 66.4
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2500.7 2013 66.5
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2498.4 1990 66.6
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2497.6 1982 66.6
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2489.1 2055 64.4
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2485.7 1998 66.7
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2478.0 1941 67.4
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2477.2 1995 65.6
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2457.6 2013 66.1
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2443.7 1984 65.1
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2378.2 1896 66.3
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2376.3 1990 62.9
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2370.1 1991 62.6
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2357.8 1982 62.1
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2357.0 1989 61.9
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2352.4 1999 63.3
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2347.0 1984 62.0
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2335.1 1983 61.5
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 2330.8 1981 61.8
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2327.7 1913 63.4
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2324.7 2023 61.5
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2312.3 1987 61.2
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2305.8 2001 61.7
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2303.5 2006 61.6
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2298.5 1905 63.7
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2289.2 2012 61.2
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 2289.2 1981 61.1
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2275.7 1908 63.7
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2275.4 2049 60.2
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2263.4 1998 60.7
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2260.7 1865 65.6
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2259.2 1927 61.8
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2251.5 2133 58.2
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2249.9 1923 61.8
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 2238.0 1892 63.5
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2233.4 2044 60.0
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2233.0 1991 60.2
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2217.2 1983 59.6
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2214.5 1943 61.1
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2208.7 1926 60.7
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 2192.2 1947 60.5
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2187.9 1970 59.9
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2186.4 1991 59.6
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2165.6 1885 61.0
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2161.7 1868 61.0
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2150.6 1964 59.3
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 2141.3 1872 60.6
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 2124.0 1876 60.2
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 2122.4 1969 58.2
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2122.1 1875 60.3
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2117.8 1911 58.5
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 2104.7 1970 58.6
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2098.2 2114 54.8
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 2090.8 1878 59.6
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 2086.6 1882 59.2
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 2086.2 1874 59.4
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 2077.4 1877 59.5
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 2076.2 1888 59.1
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 2075.4 1889 59.1
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2072.7 1887 59.1
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2069.7 1889 58.9
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 2065.4 1885 59.2
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 2047.3 1920 57.7
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 2044.6 1911 58.3
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 2044.2 1916 58.0
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2033.5 1894 57.8
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2025.4 1878 58.3
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2003.8 1917 58.3
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1915.2 2066 52.4
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1811.6 1577 60.7
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1740.7 1548 60.6
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1647.5 1356 65.6
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1599.7 1746 51.1
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1576.6 1887 49.2
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1496.1 1159 67.5
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1305.0 2133 40.0
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1267.7 1911 41.1
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1232.6 2170 37.6
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1118.6 2058 36.2
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1096.3 792 72.1
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 9.4e-263 911.8 778 63.2
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 6.7e-261 905.6 786 63.5
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 3.3e-260 903.3 1365 42.2
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 4.8e-251 872.8 677 66.5
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 2.6e-241 840.5 1144 44.4
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 3.7e-235 820.1 2084 30.7
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 2.8e-206 724.2 742 54.6
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 4.4e-188 663.7 698 54.2
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 4.0e-181 640.6 806 47.8
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 6.9e-141 506.9 381 65.4
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 1.8e-133 482.3 358 65.6
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 3.3e-106 391.7 498 48.8
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 9.2e-93 347.1 198 84.8
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 8.1e-73 280.8 217 65.4
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 1.1e-69 270.4 279 54.1
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 4.3e-66 258.5 224 60.3
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.8e-64 253.1 265 51.3
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 3.2e-61 242.3 273 48.4
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 4.9e-54 218.4 124 85.5
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 1.4e-45 190.3 280 44.6
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 2.6e-39 169.5 197 45.7
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 5.3e-32 145.2 138 55.8
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 1.2e-31 144.1 135 52.6
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 4.5e-31 142.1 80 88.8
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 1.4e-21 110.5 486 25.5
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 9.4e-21 107.8 112 49.1
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 7.9e-20 104.8 74 70.3
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 3.1e-16 92.8 68 64.7
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 2.0e-15 90.1 74 64.9
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 1.7e-14 87.0 61 65.6
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 6.5e-14 85.1 80 57.5
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 8.5e-14 84.7 71 53.5
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 2.8e-09 69.7 111 38.7
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 1.1e-08 67.8 69 60.9
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 5.3e-08 65.5 151 35.1


User provided reference genes

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