Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 0.0e+00 1103.6 549 100.0
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 4.1e-216 755.0 550 71.3
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 1.2e-212 743.4 549 70.1
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 6.1e-212 741.1 549 69.4
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 1.3e-209 733.4 551 69.7
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.6e-207 725.7 544 69.1
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 1.9e-205 719.5 553 68.7
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.8e-200 703.0 552 67.8
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 3.1e-200 702.2 550 66.9
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 5.3e-200 701.4 559 66.2
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 7.0e-200 701.0 551 67.2
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.0e-198 697.2 554 65.3
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 5.0e-198 694.9 551 66.8
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 6.5e-198 694.5 551 67.0
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.1e-197 693.7 554 66.4
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 8.0e-196 687.6 553 67.1
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 3.0e-195 685.6 544 67.3
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 1.2e-194 683.7 565 63.9
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 1.5e-194 683.3 549 64.3
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 5.7e-194 681.4 555 65.9
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 2.3e-190 669.5 552 64.1
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 3.8e-190 668.7 547 64.4
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 9.5e-189 664.1 551 65.2
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 9.5e-189 664.1 551 65.5
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 8.0e-188 661.0 553 63.7
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.3e-187 659.4 570 61.9
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 6.8e-187 657.9 548 63.9
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 7.5e-186 654.4 548 60.9
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.8e-185 652.5 553 63.7
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.7e-185 652.1 612 59.0
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 1.8e-184 649.8 548 63.5
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 3.5e-183 645.6 545 62.8
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 2.3e-182 642.9 546 62.1
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 2.9e-182 642.5 553 62.4
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 5.6e-181 638.3 547 61.6
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 1.2e-180 637.1 545 62.4
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 4.7e-180 635.2 552 62.7
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 4.7e-180 635.2 549 60.8
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 6.1e-180 634.8 566 61.0
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 6.1e-180 634.8 569 59.1
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 1.0e-179 634.0 549 60.7
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 1.4e-179 633.6 557 60.7
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 2.3e-179 632.9 555 60.9
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 6.8e-179 631.3 561 61.3
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 8.9e-179 630.9 557 60.5
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 8.9e-179 630.9 551 61.7
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 1.2e-178 630.6 557 62.1
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 2.6e-178 629.4 556 60.3
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 2.6e-178 629.4 551 60.3
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 3.4e-178 629.0 556 60.8
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 4.4e-178 628.6 578 60.2
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 2.9e-177 625.9 563 59.3
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 3.7e-177 625.5 544 61.2
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 8.3e-177 624.4 556 60.3
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 7.0e-176 621.3 544 60.7
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.6e-175 620.2 549 61.2
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 2.0e-175 619.8 563 59.5
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 4.6e-175 618.6 561 59.0
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 6.0e-175 618.2 559 59.2
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 6.0e-175 618.2 549 60.7
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 7.8e-175 617.8 529 61.6
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 7.8e-175 617.8 555 60.4
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 7.8e-175 617.8 558 61.5
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.3e-174 617.1 567 60.3
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 3.0e-174 615.9 561 58.6
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 5.0e-174 615.1 552 60.5
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 8.6e-174 614.4 557 60.5
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.5e-173 613.6 561 58.3
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 1.9e-173 613.2 556 57.6
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.5e-173 612.8 544 60.8
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 4.3e-173 612.1 544 60.7
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 5.6e-173 611.7 567 58.2
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 5.6e-173 611.7 556 59.2
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 9.5e-173 610.9 563 57.9
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 1.2e-172 610.5 544 60.8
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 2.1e-172 609.8 557 57.3
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 2.8e-172 609.4 481 68.0
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 2.8e-172 609.4 557 59.8
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 6.2e-172 608.2 559 59.2
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 8.3e-169 597.8 554 57.2
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 7.0e-168 594.7 557 58.0
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 4.6e-167 592.0 557 58.7
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.3e-166 589.7 548 59.5
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 3.0e-166 589.3 549 57.6
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 6.6e-166 588.2 544 59.9
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 7.3e-165 584.7 547 56.7
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 2.3e-163 579.7 546 58.6
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 1.5e-162 577.0 629 53.6
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 2.0e-162 576.6 546 57.0
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 9.9e-162 574.3 504 59.3
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 1.4e-160 570.5 506 61.7
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 3.2e-160 569.3 557 55.1
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 2.1e-156 556.6 559 57.8
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 2.1e-156 556.6 499 59.7
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.8e-156 556.2 542 57.6
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 3.6e-156 555.8 581 54.6
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 3.6e-156 555.8 608 50.8
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 1.1e-155 554.3 560 55.4
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 1.2e-154 550.8 524 57.3
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.2e-154 550.8 469 61.2
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 1.1e-152 544.3 558 54.7
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 1.1e-152 544.3 586 51.9
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 1.9e-152 543.5 505 59.6
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 5.4e-152 542.0 527 58.1
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 6.9e-147 525.0 523 54.7
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 9.0e-147 524.6 453 63.8
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 2.6e-146 523.1 549 51.2
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 2.2e-145 520.0 472 57.2
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 3.2e-144 516.2 560 53.0
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 3.5e-143 512.7 482 57.3
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 2.4e-139 500.0 543 52.7
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 7.6e-138 495.0 555 49.5
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 1.3e-134 484.2 567 49.6
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.3e-133 479.6 545 51.0
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 3.3e-133 479.6 511 51.5
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 5.5e-128 462.2 462 57.1
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.6e-124 450.7 450 54.7
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 2.8e-124 449.9 321 71.0
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 2.6e-122 443.4 544 44.9
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.5e-120 436.8 558 46.2
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 3.7e-116 422.9 503 50.1
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.1e-112 411.4 578 41.5
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.1e-112 411.4 578 41.5
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.1e-111 407.1 569 41.8
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.4e-107 394.4 533 42.0
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.3e-105 387.9 543 41.6
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 5.0e-105 386.0 334 62.6
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 6.1e-103 379.0 504 43.8
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 3.9e-94 349.7 559 39.0
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 6.7e-94 349.0 361 51.2
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 6.7e-94 349.0 467 46.3
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 2.3e-86 323.9 398 48.5
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 2.8e-84 317.0 705 33.0
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.5e-74 283.1 166 77.7
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 2.3e-73 280.8 458 39.3
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.3e-73 280.8 618 33.8
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.5e-72 278.1 584 34.6
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 7.2e-72 275.8 168 76.8
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 1.0e-57 228.8 261 51.3
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 2.0e-53 214.5 154 72.1
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 4.6e-50 203.4 189 60.3
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 3.3e-48 197.2 195 48.2
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 9.2e-43 179.1 278 44.2
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 2.7e-42 177.6 155 60.6
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 3.0e-41 174.1 99 76.8
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.4e-38 164.5 163 57.1
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.0e-38 163.7 150 61.3
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 1.2e-37 162.2 142 62.0
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 5.6e-32 143.3 143 53.1
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.7e-28 131.7 94 67.0
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 8.7e-25 119.4 166 38.0
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 5.3e-22 110.2 180 35.6
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 3.8e-20 104.0 99 59.6
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 9.3e-19 99.4 68 63.2
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 2.5e-16 91.3 102 46.1
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 1.8e-09 68.6 39 76.9


User provided reference genes

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