Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035243001 Vitis vinifera HOM05D000820 ORTHO05D440718 8.8e-90 333.6 165 100.0
Manes.03G132100 Manihot esculenta HOM05D000820 ORTHO05D000760 1.9e-12 76.6 55 67.3
Manes.15G068900 Manihot esculenta HOM05D000820 ORTHO05D000760 1.9e-12 76.6 55 69.1
Actinidia02351 Actinidia chinensis HOM05D000820 ORTHO05D000760 2.5e-12 76.3 52 71.2
TAR626G1630 Trochodendron aralioides HOM05D000820 ORTHO05D000760 3.3e-12 75.9 63 61.9
Gohir.A01G082300 Gossypium hirsutum HOM05D000820 ORTHO05D000760 4.3e-12 75.5 55 67.3
Gohir.D01G068900 Gossypium hirsutum HOM05D000820 ORTHO05D000760 4.3e-12 75.5 55 67.3
Gorai.002G091100 Gossypium raimondii HOM05D000820 ORTHO05D000760 4.3e-12 75.5 55 67.3
Duzib170G0194 Durio zibethinus HOM05D000820 ORTHO05D000760 5.6e-12 75.1 52 67.3
Duzib213G0820 Durio zibethinus HOM05D000820 ORTHO05D000760 5.6e-12 75.1 52 65.4
MD00G1159300 Malus domestica HOM05D000820 ORTHO05D000760 5.6e-12 75.1 55 63.6
Prupe.4G217700 Prunus persica HOM05D000820 ORTHO05D000760 5.6e-12 75.1 52 69.2
Rhsim13G0152000 Rhododendron simsii HOM05D000820 ORTHO05D000760 5.6e-12 75.1 52 69.2
Dinv13924 Davidia involucrata HOM05D000820 ORTHO05D000760 7.4e-12 74.7 52 73.1
TAR624G1184 Trochodendron aralioides HOM05D000820 ORTHO05D000760 7.4e-12 74.7 52 73.1
Ciclev10014941m.g Citrus clementina HOM05D000820 ORTHO05D000760 1.6e-11 73.6 52 69.2
Oeu051202.1 Olea europaea HOM05D000820 ORTHO05D000760 2.1e-11 73.2 52 69.2
vmacro03676 Vaccinium macrocarpon HOM05D000820 ORTHO05D000760 2.1e-11 73.2 52 69.2
Peaxi162Scf00178g00147 Petunia axillaris HOM05D000820 ORTHO05D000760 2.8e-11 72.8 52 67.3
MSTRG.16001 Avicennia marina HOM05D000820 ORTHO05D000760 3.7e-11 72.4 52 67.3
CAN.G1014.22 Capsicum annuum HOM05D000820 ORTHO05D000760 4.8e-11 72.0 52 67.3
CAN.G123.8 Capsicum annuum HOM05D000820 ORTHO05D000760 4.8e-11 72.0 52 69.2
Nn1g07215 Nelumbo nucifera HOM05D000820 ORTHO05D000760 4.8e-11 72.0 55 65.5
Gohir.A08G023700 Gossypium hirsutum HOM05D000820 ORTHO05D000760 6.2e-11 71.6 52 65.4
Ciclev10008027m.g Citrus clementina HOM05D000820 ORTHO05D000760 8.1e-11 71.2 52 67.3
Hma1.2p1_0298F.1_g117660 Hydrangea macrophylla HOM05D000820 ORTHO05D000760 8.1e-11 71.2 52 67.3
Aqoxy1G03106 Aquilegia oxysepala HOM05D000820 ORTHO05D000760 1.1e-10 70.9 52 67.3
Nitab4.5_0000005g0200 Nicotiana tabacum HOM05D000820 ORTHO05D000760 1.1e-10 70.9 52 65.4
Thecc.06G224700 Theobroma cacao HOM05D000820 ORTHO05D000760 1.1e-10 70.9 63 57.1
TAR627G0432 Trochodendron aralioides HOM05D000820 ORTHO05D000760 1.1e-10 70.9 52 71.2
CSS0047714 Camellia sinensis var. sinensis HOM05D000820 ORTHO05D000760 1.4e-10 70.5 55 65.5
MD11G1213600 Malus domestica HOM05D000820 ORTHO05D000760 1.4e-10 70.5 52 61.5
MSTRG.7194 Avicennia marina HOM05D000820 ORTHO05D000760 2.4e-10 69.7 52 65.4
SalBow8G0806 Salvia bowleyana HOM05D000820 ORTHO05D000760 2.4e-10 69.7 52 67.3
PGSC0003DMG400022062 Solanum tuberosum HOM05D000820 ORTHO05D000760 2.4e-10 69.7 52 65.4
Thecc.07G032600 Theobroma cacao HOM05D000820 ORTHO05D000760 3.1e-10 69.3 52 61.5
Peaxi162Scf00307g01424 Petunia axillaris HOM05D000820 ORTHO05D000760 4.0e-10 68.9 52 63.5
PGSC0003DMG400016442 Solanum tuberosum HOM05D000820 ORTHO05D000760 4.0e-10 68.9 52 65.4
Gohir.D08G034200 Gossypium hirsutum HOM05D000820 ORTHO05D000760 5.3e-10 68.6 52 63.5
Gorai.004G031800 Gossypium raimondii HOM05D000820 ORTHO05D000760 5.3e-10 68.6 52 63.5
QL08p009183 Quercus lobata HOM05D000820 ORTHO05D000760 5.3e-10 68.6 52 65.4
QL08p009191 Quercus lobata HOM05D000820 ORTHO05D000760 5.3e-10 68.6 52 65.4
QL08p009261 Quercus lobata HOM05D000820 ORTHO05D000760 5.3e-10 68.6 52 65.4
Solyc02g080880.4 Solanum lycopersicum HOM05D000820 ORTHO05D000760 5.3e-10 68.6 52 65.4
CiPaw.11G192200 Carya illinoinensis HOM05D000820 ORTHO05D000760 6.9e-10 68.2 52 63.5
Lj1C1233G15 Lonicera japonica HOM05D000820 ORTHO05D000760 6.9e-10 68.2 52 65.4
Nitab4.5_0001409g0030 Nicotiana tabacum HOM05D000820 ORTHO05D000760 6.9e-10 68.2 53 66.0
Peaxi162Scf00394g00014 Petunia axillaris HOM05D000820 ORTHO05D000760 6.9e-10 68.2 52 63.5
Cc09_g01440 Coffea canephora HOM05D000820 ORTHO05D000760 9.0e-10 67.8 52 63.5
CiPaw.09G095300 Carya illinoinensis HOM05D000820 ORTHO05D000760 1.2e-09 67.4 52 65.4
Migut.M01341 Erythranthe guttata HOM05D000820 ORTHO05D000760 1.2e-09 67.4 52 63.5
Sopen02g011310 Solanum pennellii HOM05D000820 ORTHO05D000760 1.2e-09 67.4 52 63.5
Sopen02g025570 Solanum pennellii HOM05D000820 ORTHO05D000760 1.2e-09 67.4 52 65.4
TWI63G1832 Tripterygium wilfordii HOM05D000820 ORTHO05D000760 1.2e-09 67.4 55 58.2
Nitab4.5_0001462g0050 Nicotiana tabacum HOM05D000820 ORTHO05D000760 1.5e-09 67.0 52 61.5
Sed0027196 Sechium edule HOM05D000820 ORTHO05D000760 1.5e-09 67.0 52 63.5
Solyc02g032940.4 Solanum lycopersicum HOM05D000820 ORTHO05D000760 3.4e-09 65.9 52 61.5
SGA_v2.0_scaffold4G01903 Striga asiatica HOM05D000820 ORTHO05D000760 3.4e-09 65.9 52 61.5
Haze_09708 Corylus avellana HOM05D000820 ORTHO05D000760 4.5e-09 65.5 51 66.7
MELO3C002442.2 Cucumis melo HOM05D000820 ORTHO05D000760 4.5e-09 65.5 52 61.5
Nitab4.5_0006031g0020 Nicotiana tabacum HOM05D000820 ORTHO05D000760 5.8e-09 65.1 53 64.2
THA.LOC104823533 Tarenaya hassleriana HOM05D000820 ORTHO05D000760 5.8e-09 65.1 77 44.2
CANSAT11G0390 Cannabis sativa HOM05D000820 ORTHO05D000760 7.6e-09 64.7 52 55.8
Cfa000187 Carpinus fangiana HOM05D000820 ORTHO05D000760 7.6e-09 64.7 52 61.5
Haze_06827 Corylus avellana HOM05D000820 ORTHO05D000760 7.6e-09 64.7 52 61.5
CsaV3_1G010600 Cucumis sativus L. HOM05D000820 ORTHO05D000760 7.6e-09 64.7 52 61.5
RcHm_v2.0_Chr5g0040781 Rosa chinensis HOM05D000820 ORTHO05D000760 7.6e-09 64.7 52 61.5
CiPaw.10G073200 Carya illinoinensis HOM05D000820 ORTHO05D000760 1.0e-08 64.3 52 63.5
Migut.H01578 Erythranthe guttata HOM05D000820 ORTHO05D000760 1.0e-08 64.3 52 59.6
Eucgr.K00787 Eucalyptus grandis HOM05D000820 ORTHO05D000760 1.0e-08 64.3 73 46.6
SGA_v2.0_scaffold7G03807 Striga asiatica HOM05D000820 ORTHO05D000760 1.3e-08 63.9 52 59.6
ClCG03G004590 Citrullus lanatus HOM05D000820 ORTHO05D000760 1.7e-08 63.5 52 61.5
FvH4_3g23140 Fragaria vesca HOM05D000820 ORTHO05D000760 1.7e-08 63.5 52 57.7
FAN11G2313 Fragaria x ananassa HOM05D000820 ORTHO05D000760 1.7e-08 63.5 52 57.7
FAN16G2546 Fragaria x ananassa HOM05D000820 ORTHO05D000760 1.7e-08 63.5 52 57.7
FAN25G0333 Fragaria x ananassa HOM05D000820 ORTHO05D000760 1.7e-08 63.5 52 57.7
PSO541G1136 Papaver somniferum HOM05D000820 ORTHO05D000760 1.7e-08 63.5 52 57.7
Atru.chr2.3487 Acer truncatum HOM05D000820 ORTHO05D000760 2.2e-08 63.2 52 63.5
CsaV3_3G004650 Cucumis sativus L. HOM05D000820 ORTHO05D000760 2.9e-08 62.8 52 57.7
FAN25G1140 Fragaria x ananassa HOM05D000820 ORTHO05D000760 3.8e-08 62.4 52 57.7
PSO675G6605 Papaver somniferum HOM05D000820 ORTHO05D000760 3.8e-08 62.4 52 55.8
QL05p072525 Quercus lobata HOM05D000820 ORTHO05D000760 3.8e-08 62.4 52 57.7
ClCG10G004970 Citrullus lanatus HOM05D000820 ORTHO05D000760 4.9e-08 62.0 52 57.7
DCAR_004232 Daucus carota HOM05D000820 ORTHO05D000760 4.9e-08 62.0 52 59.6
DCAR_028227 Daucus carota HOM05D000820 ORTHO05D000760 4.9e-08 62.0 51 56.9
FAN21G0014 Fragaria x ananassa HOM05D000820 ORTHO05D000760 4.9e-08 62.0 52 55.8
COL.COLO4_20013 Corchorus olitorius HOM05D000820 ORTHO05D000760 6.5e-08 61.6 51 51.0
CsaV3_6G048840 Cucumis sativus L. HOM05D000820 ORTHO05D000760 6.5e-08 61.6 55 60.0
Prupe.4G017700 Prunus persica HOM05D000820 ORTHO05D000760 6.5e-08 61.6 52 59.6
PGR042G3594 Punica granatum HOM05D000820 ORTHO05D000760 6.5e-08 61.6 51 64.7
Sabra11G0006500 Salix brachista HOM05D000820 ORTHO05D000760 6.5e-08 61.6 52 59.6
Sabra11G0009500 Salix brachista HOM05D000820 ORTHO05D000760 6.5e-08 61.6 52 59.6
MSTRG.14635 Avicennia marina HOM05D000820 ORTHO05D000760 8.4e-08 61.2 52 57.7
Haze_12812 Corylus avellana HOM05D000820 ORTHO05D000760 8.4e-08 61.2 51 56.9
Gohir.A06G149800 Gossypium hirsutum HOM05D000820 ORTHO05D000760 1.1e-07 60.8 53 60.4
Lj2C266T3 Lonicera japonica HOM05D000820 ORTHO05D000760 1.1e-07 60.8 63 52.4
CANSAT56G3056 Cannabis sativa HOM05D000820 ORTHO05D000760 1.4e-07 60.5 53 60.4
CDE04G0899 Ceratophyllum demersum HOM05D000820 ORTHO05D000760 1.4e-07 60.5 55 58.2
MELO3C014161.2 Cucumis melo HOM05D000820 ORTHO05D000760 1.4e-07 60.5 52 55.8
Duzib160G0901 Durio zibethinus HOM05D000820 ORTHO05D000760 1.4e-07 60.5 52 59.6
Gohir.D06G156000 Gossypium hirsutum HOM05D000820 ORTHO05D000760 1.4e-07 60.5 53 58.5
Gorai.010G182400 Gossypium raimondii HOM05D000820 ORTHO05D000760 1.4e-07 60.5 53 58.5
Manes.16G004300 Manihot esculenta HOM05D000820 ORTHO05D000760 1.4e-07 60.5 53 58.5
TWI38G1156 Tripterygium wilfordii HOM05D000820 ORTHO05D000760 1.4e-07 60.5 52 53.8
AUR62012737 Chenopodium quinoa HOM05D000820 ORTHO05D000760 1.9e-07 60.1 132 34.1
AUR62021918 Chenopodium quinoa HOM05D000820 ORTHO05D000760 1.9e-07 60.1 56 53.6
Sabra04G0004400 Salix brachista HOM05D000820 ORTHO05D000760 1.9e-07 60.1 52 59.6
Sed0023970 Sechium edule HOM05D000820 ORTHO05D000760 1.9e-07 60.1 52 53.8
Eucgr.F00741 Eucalyptus grandis HOM05D000820 ORTHO05D000760 2.5e-07 59.7 53 56.6
Potri.011G007600 Populus trichocarpa HOM05D000820 ORTHO05D000760 2.5e-07 59.7 52 59.6
Gohir.D10G011500 Gossypium hirsutum HOM05D000820 ORTHO05D000760 3.2e-07 59.3 53 56.6
Gorai.011G012800 Gossypium raimondii HOM05D000820 ORTHO05D000760 3.2e-07 59.3 53 56.6
MBI10_g35589_MAGBIO Magnolia biondii HOM05D000820 ORTHO05D000760 3.2e-07 59.3 52 59.6
Potri.004G007600 Populus trichocarpa HOM05D000820 ORTHO05D000760 3.2e-07 59.3 52 57.7
THA.LOC104818674 Tarenaya hassleriana HOM05D000820 ORTHO05D000760 3.2e-07 59.3 54 51.9
GSVIVG01037685001 Vitis vinifera HOM05D000820 ORTHO05D000760 3.2e-07 59.3 52 55.8
Duzib235G1253 Durio zibethinus HOM05D000820 ORTHO05D000760 4.2e-07 58.9 53 56.6
PSO210G1049 Papaver somniferum HOM05D000820 ORTHO05D000760 4.2e-07 58.9 54 55.6
PSO832G0577 Papaver somniferum HOM05D000820 ORTHO05D000760 4.2e-07 58.9 54 55.6
RcHm_v2.0_Chr5g0002571 Rosa chinensis HOM05D000820 ORTHO05D000760 4.2e-07 58.9 65 50.8
Atru.chr6.3219 Acer truncatum HOM05D000820 ORTHO05D000760 5.5e-07 58.5 51 58.8
ClCG01G021780 Citrullus lanatus HOM05D000820 ORTHO05D000760 5.5e-07 58.5 53 58.5
COL.COLO4_09688 Corchorus olitorius HOM05D000820 ORTHO05D000760 5.5e-07 58.5 51 54.9
Sabra16G0234900 Salix brachista HOM05D000820 ORTHO05D000760 5.5e-07 58.5 52 61.5
Atru.chr10.2261 Acer truncatum HOM05D000820 ORTHO05D000760 7.1e-07 58.2 55 58.2
Ah.14g087920 Amaranthus hybridus HOM05D000820 ORTHO05D000760 7.1e-07 58.2 54 55.6
CDE04G1936 Ceratophyllum demersum HOM05D000820 ORTHO05D000760 7.1e-07 58.2 56 50.0
CDE06G1439 Ceratophyllum demersum HOM05D000820 ORTHO05D000760 7.1e-07 58.2 55 56.4
PGR042G2020 Punica granatum HOM05D000820 ORTHO05D000760 7.1e-07 58.2 79 40.5
Hund21423 Selenicereus undatus HOM05D000820 ORTHO05D000760 7.1e-07 58.2 52 59.6
Manes.13G068000 Manihot esculenta HOM05D000820 ORTHO05D000760 9.3e-07 57.8 48 56.2
EL10Ac8g20092 Beta vulgaris HOM05D000820 ORTHO05D000760 1.2e-06 57.4 52 55.8
MELO3C007408.2 Cucumis melo HOM05D000820 ORTHO05D000760 1.2e-06 57.4 55 58.2
Dinv05408 Davidia involucrata HOM05D000820 ORTHO05D000760 1.2e-06 57.4 50 56.0
Potri.001G356900 Populus trichocarpa HOM05D000820 ORTHO05D000760 1.2e-06 57.4 53 62.3
Gohir.A10G012100 Gossypium hirsutum HOM05D000820 ORTHO05D000760 2.1e-06 56.6 53 54.7
QL08p032201 Quercus lobata HOM05D000820 ORTHO05D000760 2.1e-06 56.6 62 46.8
Hund23448 Selenicereus undatus HOM05D000820 ORTHO05D000760 2.1e-06 56.6 52 59.6
arahy.Tifrunner.gnm1.ann1.01NQBU Arachis hypogaea HOM05D000820 ORTHO05D000760 2.7e-06 56.2 52 57.7
Eucgr.D01351 Eucalyptus grandis HOM05D000820 ORTHO05D000760 2.7e-06 56.2 52 57.7
Manes.17G029012 Manihot esculenta HOM05D000820 ORTHO05D000760 2.7e-06 56.2 51 52.9
Thecc.01G176400 Theobroma cacao HOM05D000820 ORTHO05D000760 2.7e-06 56.2 50 54.0
PGR142G1646 Punica granatum HOM05D000820 ORTHO05D000760 3.5e-06 55.8 47 53.2
Sed0026314 Sechium edule HOM05D000820 ORTHO05D000760 3.5e-06 55.8 51 56.9
CARHR049830 Cardamine hirsuta HOM05D000820 ORTHO05D000760 4.6e-06 55.5 51 56.9
Cpa.g.sc684.2 Carica papaya HOM05D000820 ORTHO05D000760 4.6e-06 55.5 55 49.1
Lsat_1_v5_gn_4_61441 Lactuca sativa HOM05D000820 ORTHO05D000760 4.6e-06 55.5 53 58.5
Aqoxy1G03376 Aquilegia oxysepala HOM05D000820 ORTHO05D000760 6.0e-06 55.1 62 51.6
HanXRQChr16g0515461 Helianthus annuus HOM05D000820 ORTHO05D000760 6.0e-06 55.1 78 42.3
Lj4g0018307 Lotus japonicus HOM05D000820 ORTHO05D000760 6.0e-06 55.1 50 52.0
TWI75G0268 Tripterygium wilfordii HOM05D000820 ORTHO05D000760 6.0e-06 55.1 62 48.4
MSTRG.13133 Avicennia marina HOM05D000820 ORTHO05D000760 7.9e-06 54.7 52 55.8


User provided reference genes

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