Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035174001 Vitis vinifera HOM05D000979 ORTHO05D003182 3.8e-60 234.6 114 100.0
GSVIVG01007818001 Vitis vinifera HOM05D000979 ORTHO05D003182 3.3e-27 125.2 84 78.6
Lsat_1_v5_gn_1_12180 Lactuca sativa HOM05D000979 ORTHO05D003182 2.6e-24 115.5 84 69.0
Eucgr.B00341 Eucalyptus grandis HOM05D000979 ORTHO05D003182 4.4e-24 114.8 99 63.6
Ciclev10019471m.g Citrus clementina HOM05D000979 ORTHO05D003182 7.6e-24 114.0 84 71.4
HanXRQChr02g0044201 Helianthus annuus HOM05D000979 ORTHO05D003182 7.6e-24 114.0 84 69.0
Rhsim08G0168300 Rhododendron simsii HOM05D000979 ORTHO05D003182 7.6e-24 114.0 90 66.7
Ah.11g046160 Amaranthus hybridus HOM05D000306 ORTHO05D003182 9.9e-24 113.6 84 71.4
Nn3g16991 Nelumbo nucifera HOM05D000979 ORTHO05D003182 1.3e-23 113.2 84 70.2
CSS0036928 Camellia sinensis var. sinensis HOM05D000979 ORTHO05D003182 1.7e-23 112.8 84 70.2
Cfa019072 Carpinus fangiana HOM05D000979 ORTHO05D003182 2.2e-23 112.5 84 70.2
Nitab4.5_0001286g0080 Nicotiana tabacum HOM05D000979 ORTHO05D003182 2.2e-23 112.5 84 72.6
Nitab4.5_0001642g0070 Nicotiana tabacum HOM05D000979 ORTHO05D003182 2.2e-23 112.5 84 72.6
Potri.015G071400 Populus trichocarpa HOM05D000979 ORTHO05D003182 2.2e-23 112.5 84 70.2
EL10Ac5g10823 Beta vulgaris HOM05D000979 ORTHO05D003182 2.9e-23 112.1 74 77.0
Sabra15G0096400 Salix brachista HOM05D000979 ORTHO05D003182 2.9e-23 112.1 84 70.2
Cpa.g.sc110.19 Carica papaya HOM05D000979 ORTHO05D003182 3.8e-23 111.7 84 69.0
Nn4g22903 Nelumbo nucifera HOM05D000979 ORTHO05D003182 3.8e-23 111.7 84 67.9
CSS0020489 Camellia sinensis var. sinensis HOM05D000979 ORTHO05D003182 6.4e-23 110.9 96 62.5
CSS0042313 Camellia sinensis var. sinensis HOM05D000979 ORTHO05D003182 6.4e-23 110.9 96 62.5
CAN.G853.9 Capsicum annuum HOM05D000979 ORTHO05D003182 6.4e-23 110.9 84 72.6
AUR62008279 Chenopodium quinoa HOM05D000979 ORTHO05D003182 6.4e-23 110.9 84 67.9
TWI81G0481 Tripterygium wilfordii HOM05D000979 ORTHO05D003182 6.4e-23 110.9 84 69.0
Peaxi162Scf00017g02521 Petunia axillaris HOM05D000979 ORTHO05D003182 8.4e-23 110.5 74 78.4
Aqoxy3G03093 Aquilegia oxysepala HOM05D000979 ORTHO05D003182 1.1e-22 110.2 86 67.4
SGA_v2.0_scaffold467G52027 Striga asiatica HOM05D000979 ORTHO05D003182 1.1e-22 110.2 84 67.9
ECA247G1935 Erigeron canadensis HOM05D000979 ORTHO05D003182 1.4e-22 109.8 84 67.9
Sed0018463 Sechium edule HOM05D000979 ORTHO05D003182 1.9e-22 109.4 84 67.9
CsaV3_1G001780 Cucumis sativus L. HOM05D000979 ORTHO05D003182 2.4e-22 109.0 84 66.7
Dinv20695 Davidia involucrata HOM05D000979 ORTHO05D003182 2.4e-22 109.0 74 75.7
Gohir.A09G170400 Gossypium hirsutum HOM05D000979 ORTHO05D003182 2.4e-22 109.0 84 66.7
Gohir.D09G166100 Gossypium hirsutum HOM05D000979 ORTHO05D003182 2.4e-22 109.0 84 66.7
Gorai.006G187900 Gossypium raimondii HOM05D000979 ORTHO05D003182 2.4e-22 109.0 84 66.7
Haze_07442 Corylus avellana HOM05D000979 ORTHO05D003182 3.2e-22 108.6 84 66.7
MELO3C017118.2 Cucumis melo HOM05D000979 ORTHO05D003182 3.2e-22 108.6 84 65.5
Potri.012G076600 Populus trichocarpa HOM05D000979 ORTHO05D003182 3.2e-22 108.6 84 70.2
Actinidia33039 Actinidia chinensis HOM05D000979 ORTHO05D003182 4.2e-22 108.2 84 66.7
CiPaw.11G031100 Carya illinoinensis HOM05D000979 ORTHO05D003182 4.2e-22 108.2 84 67.9
FAN08G3080 Fragaria x ananassa HOM05D000979 ORTHO05D003182 4.2e-22 108.2 84 65.5
MBI15_g03390_MAGBIO Magnolia biondii HOM05D000979 ORTHO05D003182 4.2e-22 108.2 84 66.7
Sc04g0002070 Simmondsia chinensis HOM05D000979 ORTHO05D003182 5.4e-22 107.8 84 64.3
ClCG06G016740 Citrullus lanatus HOM05D000979 ORTHO05D003182 7.1e-22 107.5 84 66.7
Solyc03g113900.4 Solanum lycopersicum HOM05D000979 ORTHO05D003182 7.1e-22 107.5 84 71.4
Sopen03g032950 Solanum pennellii HOM05D000979 ORTHO05D003182 7.1e-22 107.5 84 71.4
PGSC0003DMG401024473 Solanum tuberosum HOM05D000979 ORTHO05D003182 7.1e-22 107.5 84 71.4
Thecc.03G005300 Theobroma cacao HOM05D000979 ORTHO05D003182 7.1e-22 107.5 84 65.5
Cc04_g13530 Coffea canephora HOM05D000979 ORTHO05D003182 9.3e-22 107.1 85 69.4
COL.COLO4_04325 Corchorus olitorius HOM05D000979 ORTHO05D003182 9.3e-22 107.1 84 66.7
Medtr4g106370 Medicago truncatula HOM05D000979 ORTHO05D003182 9.3e-22 107.1 84 66.7
RcHm_v2.0_Chr7g0179631 Rosa chinensis HOM05D000979 ORTHO05D003182 9.3e-22 107.1 84 66.7
Hund09408 Selenicereus undatus HOM05D000979 ORTHO05D003182 9.3e-22 107.1 86 64.0
CANSAT80G0008 Cannabis sativa HOM05D000979 ORTHO05D003182 1.2e-21 106.7 74 73.0
Duzib084G1093 Durio zibethinus HOM05D000979 ORTHO05D003182 1.2e-21 106.7 84 64.3
FvH4_5g16460 Fragaria vesca HOM05D000979 ORTHO05D003182 1.2e-21 106.7 84 65.5
FAN18G1931 Fragaria x ananassa HOM05D000979 ORTHO05D003182 1.2e-21 106.7 84 65.5
VMungo1215G0019 Vigna mungo HOM05D000979 ORTHO05D003182 1.2e-21 106.7 84 64.3
arahy.Tifrunner.gnm1.ann1.1E0YQ2 Arachis hypogaea HOM05D000979 ORTHO05D003182 1.6e-21 106.3 84 65.5
arahy.Tifrunner.gnm1.ann1.CGIH3L Arachis hypogaea HOM05D000979 ORTHO05D003182 1.6e-21 106.3 84 65.5
Manes.06G101300 Manihot esculenta HOM05D000979 ORTHO05D003182 1.6e-21 106.3 84 65.5
PGR083G1350 Punica granatum HOM05D000979 ORTHO05D003182 1.6e-21 106.3 84 65.5
Ca_21893_v3 Cicer arietinum L. HOM05D000979 ORTHO05D003182 2.1e-21 105.9 96 59.4
Lalb_Chr12g0201401 Lupinus albus HOM05D000979 ORTHO05D003182 2.7e-21 105.5 84 63.1
QL10p012440 Quercus lobata HOM05D000979 ORTHO05D003182 2.7e-21 105.5 84 64.3
DCAR_026114 Daucus carota HOM05D000979 ORTHO05D003182 3.5e-21 105.1 84 66.7
Glyma.17G092900 Glycine max HOM05D000979 ORTHO05D003182 3.5e-21 105.1 84 64.3
Lj9C453T5 Lonicera japonica HOM05D000979 ORTHO05D003182 3.5e-21 105.1 84 66.7
MD14G1185600 Malus domestica HOM05D000979 ORTHO05D003182 3.5e-21 105.1 84 65.5
PSO832G4469 Papaver somniferum HOM05D000979 ORTHO05D003182 3.5e-21 105.1 84 65.5
Oeu016338.1 Olea europaea HOM05D000979 ORTHO05D003182 6.0e-21 104.4 84 65.5
unitig_750.g28479 Utricularia gibba HOM05D000979 ORTHO05D003182 6.0e-21 104.4 74 68.9
Phvul.003G197300 Phaseolus vulgaris HOM05D000979 ORTHO05D003182 7.8e-21 104.0 96 56.2
BcaC05g26753 Brassica carinata HOM05D000979 ORTHO05D003182 1.0e-20 103.6 84 64.3
BraA09t39355Z Brassica rapa HOM05D000979 ORTHO05D003182 1.0e-20 103.6 84 64.3
Carub.0001s2607 Capsella rubella HOM05D000979 ORTHO05D003182 1.0e-20 103.6 84 60.7
Thhalv10007201m.g Eutrema salsugineum HOM05D000979 ORTHO05D003182 1.3e-20 103.2 84 60.7
TPR.G37545 Trifolium pratense HOM05D000979 ORTHO05D003182 1.3e-20 103.2 84 63.1
Lj4g0017712 Lotus japonicus HOM05D000979 ORTHO05D003182 1.7e-20 102.8 84 61.9
THA.LOC104808302 Tarenaya hassleriana HOM05D000979 ORTHO05D003182 1.7e-20 102.8 84 63.1
AT1G27520 Arabidopsis thaliana HOM05D000979 ORTHO05D003182 2.3e-20 102.4 84 61.9
Prupe.5G178500 Prunus persica HOM05D000979 ORTHO05D003182 2.3e-20 102.4 84 63.1
Psat4g056000 Pisum sativum HOM05D000979 ORTHO05D003182 3.0e-20 102.1 84 63.1
AL1G40950 Arabidopsis lyrata HOM05D000979 ORTHO05D003182 3.9e-20 101.7 84 61.9
A09p38490 Brassica napus HOM05D000979 ORTHO05D003182 3.9e-20 101.7 84 63.1
Migut.I00053 Erythranthe guttata HOM05D000979 ORTHO05D003182 3.9e-20 101.7 85 63.5
Sp1g23770 Schrenkiella parvula HOM05D000979 ORTHO05D003182 3.9e-20 101.7 84 60.7
Glyma.U031507 Glycine max HOM05D000979 ORTHO05D003182 8.7e-20 100.5 84 61.9
ATR1149G103 Amborella trichopoda HOM05D000979 ORTHO05D003182 1.1e-19 100.1 81 64.2
BcaC05g26569 Brassica carinata HOM05D000979 ORTHO05D003182 1.1e-19 100.1 84 61.9
C05p26210 Brassica napus HOM05D000979 ORTHO05D003182 1.1e-19 100.1 84 61.9
BolC5t31335H Brassica oleracea HOM05D000979 ORTHO05D003182 1.1e-19 100.1 84 61.9
HPP92_017566 Vanilla planifolia HOM05D000979 ORTHO05D003182 1.5e-19 99.8 96 54.2
vmacro19358 Vaccinium macrocarpon HOM05D000979 ORTHO05D003182 1.9e-19 99.4 91 61.5
CDE06G1664 Ceratophyllum demersum HOM05D000979 ORTHO05D003182 1.6e-18 96.3 84 58.3
SMO145G0001 Selaginella moellendorffii HOM05D000979 ORTHO05D003182 3.4e-16 88.6 74 58.1
SMO366G0001 Selaginella moellendorffii HOM05D000979 ORTHO05D003182 3.4e-16 88.6 74 58.1
SEGI_31358 Sequoiadendron giganteum HOM05D000979 ORTHO05D003182 7.6e-16 87.4 84 53.6
Zm00001eb254180 Zea mays HOM05D000979 ORTHO05D003182 9.9e-16 87.0 84 54.8
Os02g0741300 Oryza sativa ssp. japonica HOM05D000979 ORTHO05D003182 2.9e-15 85.5 84 53.6
TAR374G0531 Trochodendron aralioides HOM05D000979 ORTHO05D003182 8.4e-15 84.0 55 76.4
Mapoly0181s0015 Marchantia polymorpha HOM05D000979 ORTHO05D003182 3.2e-14 82.0 74 56.8
Sabra15G0076500 Salix brachista HOM05D000979 ORTHO05D003182 3.5e-13 78.6 81 55.6
Prupe.5G008500 Prunus persica HOM05D000979 ORTHO05D335607 1.1e-11 73.6 66 59.1
MD06G1179200 Malus domestica HOM05D000979 ORTHO05D028461 1.3e-10 70.1 73 54.8
CBR_g23002 Chara braunii HOM05D000979 ORTHO05D003182 3.6e-10 68.6 74 47.3
AagrBONN_evm.TU.Sc2ySwM_344.3650 Anthoceros agrestis HOM05D000979 ORTHO05D003182 3.1e-09 65.5 73 46.6
CsaV3_3G012670 Cucumis sativus L. HOM05D000979 ORTHO05D003182 3.4e-08 62.0 74 40.5
MCO15G188 Micromonas commoda HOM05D000979 ORTHO05D003182 7.6e-08 60.8 60 46.7
Pp3c17_13130 Physcomitrium patens HOM05D000979 ORTHO05D003182 9.9e-08 60.5 73 42.5
PRCOL_00004503 Prasinoderma coloniale HOM05D000979 ORTHO05D003182 1.3e-07 60.1 85 45.9
Aa31LG5G3530 Aethionema arabicum HOM05D000979 ORTHO05D003182 2.2e-07 59.3 74 39.2
MELO3C006478.2 Cucumis melo HOM05D000979 ORTHO05D003182 2.2e-07 59.3 73 39.7
ATR0665G580 Amborella trichopoda HOM05D000979 ORTHO05D003182 2.9e-07 58.9 74 37.8
FvH4_4g02250 Fragaria vesca HOM05D000979 ORTHO05D003182 4.9e-07 58.2 74 39.2
FAN12G0043 Fragaria x ananassa HOM05D000979 ORTHO05D003182 4.9e-07 58.2 74 39.2
FvH4_4g01870 Fragaria vesca HOM05D000979 ORTHO05D003182 6.4e-07 57.8 74 39.2
FAN17G2213 Fragaria x ananassa HOM05D000979 ORTHO05D003182 6.4e-07 57.8 74 37.8
FAN22G1971 Fragaria x ananassa HOM05D000979 ORTHO05D003182 6.4e-07 57.8 74 39.2
Nitab4.5_0012986g0010 Nicotiana tabacum HOM05D000979 ORTHO05D003182 8.4e-07 57.4 73 39.7
Haze_26948 Corylus avellana HOM05D000979 ORTHO05D003182 1.1e-06 57.0 49 49.0
SMO116G0477 Selaginella moellendorffii HOM05D000979 ORTHO05D003182 1.1e-06 57.0 73 41.1
Prupe.1G027300 Prunus persica HOM05D000979 ORTHO05D003182 1.4e-06 56.6 73 39.7
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 1.4e-06 56.6 73 37.0
THA.LOC104815980 Tarenaya hassleriana HOM05D000979 ORTHO05D003182 1.4e-06 56.6 98 33.7
arahy.Tifrunner.gnm1.ann1.ECXW3T Arachis hypogaea HOM05D000979 ORTHO05D003182 1.9e-06 56.2 74 37.8
arahy.Tifrunner.gnm1.ann1.F4SDAN Arachis hypogaea HOM05D000979 ORTHO05D003182 1.9e-06 56.2 74 37.8
BraA02t07828Z Brassica rapa HOM05D000979 ORTHO05D003182 1.9e-06 56.2 99 33.3
AL8G16610 Arabidopsis lyrata HOM05D000979 ORTHO05D003182 3.2e-06 55.5 73 37.0
BcaC03g16587 Brassica carinata HOM05D000979 ORTHO05D003182 3.2e-06 55.5 73 37.0
C02p44060 Brassica napus HOM05D000979 ORTHO05D003182 3.2e-06 55.5 73 37.0
BolC2t10449H Brassica oleracea HOM05D000979 ORTHO05D003182 3.2e-06 55.5 73 37.0
Glyma.10G179900 Glycine max HOM05D000979 ORTHO05D003182 3.2e-06 55.5 73 39.7
RcHm_v2.0_Chr4g0389601 Rosa chinensis HOM05D000979 ORTHO05D003182 3.2e-06 55.5 74 37.8
Sc25g0004150 Simmondsia chinensis HOM05D000979 ORTHO05D003182 3.2e-06 55.5 74 37.8
A02p27900 Brassica napus HOM05D000979 ORTHO05D003182 4.2e-06 55.1 73 37.0
CANSAT78G0759 Cannabis sativa HOM05D000979 ORTHO05D003182 4.2e-06 55.1 73 38.4
Carub.0008s0492 Capsella rubella HOM05D000979 ORTHO05D003182 4.2e-06 55.1 73 37.0
CARHR179910 Cardamine hirsuta HOM05D000979 ORTHO05D003182 4.2e-06 55.1 73 37.0
Haze_26878 Corylus avellana HOM05D000979 ORTHO05D003182 4.2e-06 55.1 114 37.7
Thhalv10003168m.g Eutrema salsugineum HOM05D000979 ORTHO05D003182 4.2e-06 55.1 73 37.0
MD16G1206300 Malus domestica HOM05D000979 ORTHO05D003182 4.2e-06 55.1 73 38.4
Sp2g08500 Schrenkiella parvula HOM05D000979 ORTHO05D003182 4.2e-06 55.1 73 37.0
CDE07G0897 Ceratophyllum demersum HOM05D000979 ORTHO05D003182 5.5e-06 54.7 73 37.0
Gohir.A09G222200 Gossypium hirsutum HOM05D000979 ORTHO05D003182 5.5e-06 54.7 73 38.4
Gohir.D09G224300 Gossypium hirsutum HOM05D000979 ORTHO05D003182 7.1e-06 54.3 73 38.4
Gorai.006G245800 Gossypium raimondii HOM05D000979 ORTHO05D003182 7.1e-06 54.3 73 38.4
SalBow2G2992 Salvia bowleyana HOM05D000979 ORTHO05D003182 7.1e-06 54.3 98 32.7
SGA_v2.0_scaffold101G29783 Striga asiatica HOM05D000979 ORTHO05D003182 7.1e-06 54.3 98 32.7
BcaB07g30563 Brassica carinata HOM05D000979 ORTHO05D003182 9.3e-06 53.9 73 37.0
Cpa.g.sc58.25 Carica papaya HOM05D000979 ORTHO05D003182 9.3e-06 53.9 97 34.0
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 9.3e-06 53.9 73 37.0
Manes.03G169900 Manihot esculenta HOM05D000979 ORTHO05D003182 9.3e-06 53.9 73 37.0
Nitab4.5_0001497g0110 Nicotiana tabacum HOM05D000979 ORTHO05D003182 9.3e-06 53.9 73 37.0
Phvul.003G138408 Phaseolus vulgaris HOM05D000979 ORTHO05D003182 9.3e-06 53.9 73 38.4
Hund19227 Selenicereus undatus HOM05D000979 ORTHO05D003182 9.3e-06 53.9 75 36.0
Solyc06g053860.3 Solanum lycopersicum HOM05D000979 ORTHO05D003182 9.3e-06 53.9 73 35.6
Sopen06g018990 Solanum pennellii HOM05D000979 ORTHO05D003182 9.3e-06 53.9 73 35.6
Thecc.04G244100 Theobroma cacao HOM05D000979 ORTHO05D003182 9.3e-06 53.9 73 37.0


User provided reference genes

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