Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 2.8e-54 214.9 102 100.0
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 5.3e-37 157.5 85 88.2
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 5.3e-37 157.5 79 89.9
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 7.0e-37 157.1 85 88.2
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 9.1e-37 156.8 85 87.1
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 1.2e-36 156.4 79 88.6
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 1.6e-36 156.0 82 86.6
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 1.6e-36 156.0 80 91.2
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 2.0e-36 155.6 82 86.6
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 2.0e-36 155.6 79 92.4
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 2.7e-36 155.2 82 89.0
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 2.7e-36 155.2 85 83.5
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 2.7e-36 155.2 82 89.0
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 2.7e-36 155.2 85 85.9
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 3.5e-36 154.8 78 91.0
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 4.5e-36 154.5 82 89.0
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 5.9e-36 154.1 75 94.7
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 5.9e-36 154.1 79 88.6
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 5.9e-36 154.1 76 92.1
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 7.7e-36 153.7 75 94.7
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 1.0e-35 153.3 80 87.5
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 1.0e-35 153.3 85 82.4
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.3e-35 152.9 79 88.6
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.3e-35 152.9 79 88.6
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 1.7e-35 152.5 77 89.6
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 2.9e-35 151.8 82 84.1
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 2.9e-35 151.8 81 88.9
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.8e-35 151.4 79 87.3
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 6.5e-35 150.6 73 93.2
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 6.5e-35 150.6 78 88.5
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 6.5e-35 150.6 79 89.9
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 6.5e-35 150.6 78 88.5
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 8.5e-35 150.2 84 82.1
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 8.5e-35 150.2 82 82.9
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 8.5e-35 150.2 79 87.3
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 1.1e-34 149.8 71 95.8
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 1.1e-34 149.8 85 83.5
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 1.1e-34 149.8 82 82.9
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.9e-34 149.1 82 81.7
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 1.9e-34 149.1 85 80.0
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 1.9e-34 149.1 77 87.0
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 1.9e-34 149.1 82 81.7
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 1.9e-34 149.1 85 80.0
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 2.5e-34 148.7 85 82.4
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 2.5e-34 148.7 85 82.4
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 2.5e-34 148.7 85 82.4
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 2.5e-34 148.7 85 82.4
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 2.5e-34 148.7 85 82.4
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 2.5e-34 148.7 82 81.7
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 2.5e-34 148.7 76 88.2
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 2.5e-34 148.7 82 81.7
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 2.5e-34 148.7 74 91.9
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 2.5e-34 148.7 74 91.9
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 2.5e-34 148.7 74 91.9
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 2.5e-34 148.7 74 91.9
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 2.5e-34 148.7 85 82.4
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 3.2e-34 148.3 81 82.7
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 3.2e-34 148.3 85 82.4
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 3.2e-34 148.3 85 82.4
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 3.2e-34 148.3 85 82.4
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 4.2e-34 147.9 81 81.5
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 4.2e-34 147.9 78 84.6
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 4.2e-34 147.9 82 82.9
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 4.2e-34 147.9 76 86.8
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 4.2e-34 147.9 74 90.5
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 4.2e-34 147.9 77 87.0
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 5.5e-34 147.5 85 78.8
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 5.5e-34 147.5 85 80.0
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 5.5e-34 147.5 76 86.8
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 7.2e-34 147.1 78 84.6
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 7.2e-34 147.1 77 89.6
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 7.2e-34 147.1 77 89.6
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 7.2e-34 147.1 77 89.6
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 7.2e-34 147.1 77 89.6
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 7.2e-34 147.1 76 86.8
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 7.2e-34 147.1 78 85.9
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 7.2e-34 147.1 79 83.5
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 9.4e-34 146.7 81 86.4
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 9.4e-34 146.7 77 89.6
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 9.4e-34 146.7 77 89.6
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 9.4e-34 146.7 77 89.6
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 9.4e-34 146.7 76 86.8
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 1.2e-33 146.4 82 81.7
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 1.2e-33 146.4 82 81.7
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 1.2e-33 146.4 82 81.7
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 1.2e-33 146.4 74 87.8
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 1.2e-33 146.4 76 86.8
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 1.2e-33 146.4 74 90.5
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 1.2e-33 146.4 77 88.3
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 1.6e-33 146.0 76 85.5
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.6e-33 146.0 75 86.7
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 2.1e-33 145.6 85 80.0
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 2.1e-33 145.6 76 85.5
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 2.7e-33 145.2 82 80.5
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 2.7e-33 145.2 82 80.5
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 2.7e-33 145.2 74 89.2
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 2.7e-33 145.2 81 82.7
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 3.6e-33 144.8 76 85.5
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 3.6e-33 144.8 73 89.0
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 3.6e-33 144.8 78 84.6
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 3.6e-33 144.8 73 89.0
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 3.6e-33 144.8 73 89.0
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 4.7e-33 144.4 73 89.0
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 4.7e-33 144.4 81 84.0
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 4.7e-33 144.4 77 88.3
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 4.7e-33 144.4 77 84.4
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 4.7e-33 144.4 72 90.3
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 6.1e-33 144.1 73 90.4
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 6.1e-33 144.1 73 90.4
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 6.1e-33 144.1 73 90.4
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 8.0e-33 143.7 78 85.9
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 1.0e-32 143.3 78 84.6
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 1.0e-32 143.3 73 87.7
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 1.0e-32 143.3 79 82.3
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 6.8e-32 140.6 102 68.6
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 8.8e-32 140.2 69 89.9
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 2.0e-31 139.0 82 79.3
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 9.8e-31 136.7 65 92.3
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 9.8e-31 136.7 63 95.2
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 3.7e-30 134.8 71 90.1
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 5.4e-29 131.0 97 67.0
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 7.0e-29 130.6 98 67.3
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 7.0e-29 130.6 61 93.4
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 9.1e-29 130.2 62 91.9
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 9.1e-29 130.2 62 91.9
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 3.5e-28 128.3 61 91.8
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 4.5e-28 127.9 60 91.7
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 4.5e-28 127.9 80 71.2
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 1.9e-26 122.5 57 93.0
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 2.1e-25 119.0 64 85.9
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 5.7e-23 110.9 50 94.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 9.8e-23 110.2 50 94.0
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 9.8e-23 110.2 50 92.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 3.7e-22 108.2 50 92.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 1.6e-20 102.8 49 87.8
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 7.8e-20 100.5 75 61.3
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 2.3e-19 99.0 77 62.3
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 1.1e-18 96.7 75 61.3
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 4.3e-18 94.7 61 75.4
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 5.6e-18 94.4 64 62.5
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 5.6e-18 94.4 64 62.5
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 4.6e-12 74.7 75 48.0
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 2.6e-07 58.9 29 86.2


User provided reference genes

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