Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 7.1e-51 203.8 111 100.0
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 3.3e-48 194.9 111 95.5
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 3.3e-48 194.9 111 95.5
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 7.3e-48 193.7 111 93.7
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 1.4e-46 189.5 111 93.7
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 1.8e-46 189.1 111 93.7
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 4.0e-46 188.0 111 91.0
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 5.2e-46 187.6 111 91.9
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 1.5e-45 186.0 111 90.1
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 2.0e-45 185.7 111 90.1
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 2.0e-45 185.7 111 90.1
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 3.4e-45 184.9 111 90.1
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 4.4e-45 184.5 111 90.1
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 4.4e-45 184.5 111 90.1
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 4.4e-45 184.5 111 90.1
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 5.8e-45 184.1 111 90.1
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 9.9e-45 183.3 111 89.2
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 1.3e-44 183.0 111 89.2
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 2.2e-44 182.2 109 91.7
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 2.2e-44 182.2 111 89.2
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 2.2e-44 182.2 111 88.3
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.9e-44 181.8 111 90.1
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.9e-44 181.8 111 91.0
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.9e-44 181.8 111 91.0
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.9e-44 181.8 111 91.0
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 2.9e-44 181.8 112 92.9
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 3.8e-44 181.4 111 89.2
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 3.8e-44 181.4 111 90.1
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 3.8e-44 181.4 109 90.8
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 3.8e-44 181.4 111 87.4
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 6.4e-44 180.6 107 93.5
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 8.4e-44 180.3 112 92.0
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 1.1e-43 179.9 111 85.6
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 1.1e-43 179.9 111 90.1
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 1.1e-43 179.9 111 90.1
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 1.4e-43 179.5 111 86.5
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 1.4e-43 179.5 111 86.5
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 1.4e-43 179.5 110 90.9
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 2.4e-43 178.7 107 89.7
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 5.4e-43 177.6 133 78.2
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 7.1e-43 177.2 127 78.7
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 7.1e-43 177.2 112 86.6
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 7.1e-43 177.2 112 86.6
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 7.1e-43 177.2 112 88.4
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 9.3e-43 176.8 107 91.6
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 1.6e-42 176.0 112 89.3
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 3.5e-42 174.9 108 88.9
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 3.5e-42 174.9 112 88.4
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 3.5e-42 174.9 111 87.4
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 4.6e-42 174.5 111 87.4
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 4.6e-42 174.5 106 87.7
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 6.0e-42 174.1 111 88.3
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 6.0e-42 174.1 109 87.2
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 7.8e-42 173.7 112 89.3
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 1.3e-41 172.9 111 86.5
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.3e-41 172.9 111 86.5
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.3e-41 172.9 111 86.5
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 1.7e-41 172.6 109 83.5
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 2.3e-41 172.2 111 85.6
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 86.5
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 3.0e-41 171.8 112 86.6
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 3.9e-41 171.4 111 83.8
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 3.9e-41 171.4 111 83.8
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 5.1e-41 171.0 109 87.2
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 85.6
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 5.1e-41 171.0 108 88.9
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 86.5
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 6.6e-41 170.6 109 85.3
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 8.7e-41 170.2 107 90.7
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 8.7e-41 170.2 111 85.6
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 1.1e-40 169.9 111 86.5
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.1e-40 169.9 111 85.6
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 2.5e-40 168.7 113 85.0
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 4.3e-40 167.9 111 83.8
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 4.3e-40 167.9 109 84.4
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 4.3e-40 167.9 107 85.0
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 5.6e-40 167.5 111 83.8
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 5.6e-40 167.5 111 84.7
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 9.6e-40 166.8 111 84.7
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 9.6e-40 166.8 111 84.7
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 1.3e-39 166.4 108 88.0
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 1.3e-39 166.4 100 87.0
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 2.8e-39 165.2 103 83.5
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 1.8e-38 162.5 107 84.1
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 3.1e-38 161.8 107 84.1
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 3.1e-38 161.8 107 84.1
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 3.1e-38 161.8 107 84.1
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.1e-38 161.8 111 81.1
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 4.0e-38 161.4 109 79.8
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 6.9e-38 160.6 110 84.5
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 6.9e-38 160.6 105 80.0
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.0e-37 159.1 99 89.9
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 4.5e-37 157.9 110 80.0
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 5.8e-37 157.5 112 83.0
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 4.9e-36 154.5 111 78.4
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 6.4e-36 154.1 111 78.4
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 1.1e-35 153.3 112 75.0
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 1.4e-35 152.9 111 79.3
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.9e-35 152.5 110 79.1
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 3.2e-35 151.8 110 79.1
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 4.2e-35 151.4 110 78.2
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 4.2e-35 151.4 110 78.2
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 4.2e-35 151.4 110 78.2
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 4.2e-35 151.4 110 78.2
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 4.2e-35 151.4 110 78.2
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 4.2e-35 151.4 110 77.3
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 4.2e-35 151.4 112 76.8
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 5.4e-35 151.0 110 78.2
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 9.3e-35 150.2 109 76.1
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 1.6e-34 149.4 110 77.3
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 1.6e-34 149.4 110 77.3
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 2.7e-34 148.7 109 80.7
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 3.5e-34 148.3 110 76.4
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 7.9e-34 147.1 107 72.9
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 1.0e-33 146.7 110 76.4
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 1.3e-33 146.4 111 77.5
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 1.3e-33 146.4 110 76.4
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 1.8e-33 146.0 111 73.9
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.8e-33 146.0 113 75.2
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 5.1e-33 144.4 110 75.5
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 5.1e-33 144.4 175 56.6
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 6.7e-33 144.1 111 73.9
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 1.5e-32 142.9 98 81.6
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 4.3e-32 141.4 111 72.1
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 5.6e-32 141.0 111 72.1
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 8.1e-31 137.1 108 71.3
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.4e-30 135.6 111 71.2
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 4.0e-30 134.8 97 76.3
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.2e-28 129.0 111 69.4
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 6.4e-28 127.5 101 68.3
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 7.1e-27 124.0 83 85.5
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 9.3e-27 123.6 102 70.6
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 5.6e-24 114.4 62 96.8
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.1e-22 110.2 68 89.7
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 5.3e-22 107.8 110 61.8
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 5.1e-17 91.3 61 83.6
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 1.1e-16 90.1 92 58.7
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 1.5e-16 89.7 57 82.5
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 1.3e-15 86.7 110 49.1
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.6e-15 86.3 50 92.0
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 4.8e-15 84.7 57 80.7
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 1.5e-13 79.7 62 72.6
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 6.5e-12 74.3 44 88.6
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.9e-11 72.8 62 69.4
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 6.3e-07 57.8 102 40.2


User provided reference genes

Program Settings