Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.9e-54 215.7 118 100.0
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 9.3e-25 117.1 68 97.1
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 5.1e-23 111.3 68 91.2
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.9e-22 109.4 68 88.2
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 1.9e-22 109.4 76 82.9
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 1.9e-22 109.4 68 88.2
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 3.3e-22 108.6 68 88.2
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 4.3e-22 108.2 68 86.8
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 5.6e-22 107.8 69 84.1
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 5.6e-22 107.8 68 85.3
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 7.3e-22 107.5 67 89.6
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 9.6e-22 107.1 68 88.2
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 1.3e-21 106.7 83 77.1
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 1.3e-21 106.7 68 85.3
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 1.3e-21 106.7 83 77.1
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.6e-21 106.3 67 88.1
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 1.6e-21 106.3 68 86.8
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 2.1e-21 105.9 67 88.1
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 2.8e-21 105.5 73 82.2
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 3.6e-21 105.1 83 75.9
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 3.6e-21 105.1 68 83.8
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.8e-21 104.8 68 85.3
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 4.8e-21 104.8 83 74.7
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 4.8e-21 104.8 73 80.8
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 4.8e-21 104.8 68 86.8
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 4.8e-21 104.8 68 85.3
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 8.1e-21 104.0 68 85.3
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 8.1e-21 104.0 73 80.8
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 8.1e-21 104.0 67 85.1
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 1.1e-20 103.6 73 79.5
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.1e-20 103.6 68 83.8
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 1.1e-20 103.6 80 73.8
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 1.4e-20 103.2 68 82.4
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 1.4e-20 103.2 68 82.4
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 1.4e-20 103.2 73 79.5
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 1.4e-20 103.2 73 83.6
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 1.8e-20 102.8 83 73.5
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.8e-20 102.8 68 82.4
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.8e-20 102.8 83 75.9
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 1.8e-20 102.8 68 82.4
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 2.4e-20 102.4 67 83.6
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 2.4e-20 102.4 68 82.4
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 3.1e-20 102.1 67 86.6
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 3.1e-20 102.1 68 83.8
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 3.1e-20 102.1 68 83.8
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 3.1e-20 102.1 68 83.8
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 4.0e-20 101.7 68 82.4
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.3e-20 101.3 68 83.8
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.3e-20 101.3 68 83.8
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.3e-20 101.3 68 83.8
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 6.9e-20 100.9 83 72.3
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 6.9e-20 100.9 68 80.9
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 6.9e-20 100.9 68 82.4
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.9e-20 100.9 68 82.4
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.9e-20 100.9 68 82.4
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.9e-20 100.9 68 82.4
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 9.0e-20 100.5 73 79.5
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 9.0e-20 100.5 67 82.1
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 1.2e-19 100.1 73 80.8
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 1.5e-19 99.8 73 76.7
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.5e-19 99.8 68 82.4
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 1.5e-19 99.8 73 75.3
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 2.0e-19 99.4 68 82.4
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 2.6e-19 99.0 68 79.4
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 3.4e-19 98.6 73 78.1
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 3.4e-19 98.6 73 76.7
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 3.4e-19 98.6 73 76.7
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 9.9e-19 97.1 68 77.9
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 9.9e-19 97.1 67 79.1
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 1.3e-18 96.7 67 80.6
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 1.3e-18 96.7 67 80.6
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 1.3e-18 96.7 67 80.6
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 2.2e-18 95.9 67 82.1
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.9e-18 95.5 68 76.5
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 2.9e-18 95.5 74 74.3
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 3.8e-18 95.1 67 79.1
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 3.8e-18 95.1 67 79.1
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 4.9e-18 94.7 68 75.0
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 8.4e-18 94.0 67 79.1
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 8.4e-18 94.0 81 67.9
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 1.4e-17 93.2 67 79.1
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 1.4e-17 93.2 67 79.1
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.4e-17 93.2 68 77.9
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 1.4e-17 93.2 68 75.0
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 2.4e-17 92.4 73 72.6
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 3.2e-17 92.0 68 75.0
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 4.2e-17 91.7 67 77.6
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 4.2e-17 91.7 68 72.1
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 9.3e-17 90.5 67 74.6
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 9.3e-17 90.5 67 76.1
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 1.2e-16 90.1 72 73.6
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 1.6e-16 89.7 65 75.4
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.6e-16 89.7 68 73.5
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 3.5e-16 88.6 73 68.5
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 4.6e-16 88.2 68 70.6
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.5e-14 83.2 74 66.2
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.4e-12 76.6 79 60.8
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 3.1e-12 75.5 50 84.0
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 4.0e-12 75.1 74 60.8
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 1.2e-11 73.6 67 62.7
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 2.0e-11 72.8 48 81.2
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 4.5e-11 71.6 43 93.0
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 4.5e-11 71.6 80 52.5
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-10 69.3 66 59.1
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 8.4e-10 67.4 43 88.4
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 8.4e-10 67.4 43 88.4
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 1.1e-09 67.0 73 53.4
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.9e-09 66.2 46 71.7
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 7.1e-09 64.3 66 56.1
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 1.2e-08 63.5 46 71.7
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 4.6e-08 61.6 44 72.7
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 8.7e-07 57.4 103 44.7
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 1.1e-06 57.0 36 91.7
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.5e-06 56.6 77 44.2
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 4.3e-06 55.1 80 41.2


User provided reference genes

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