Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01034602001 Vitis vinifera HOM05D005886 ORTHO05D007512 5.0e-66 254.2 122 100.0
Rhsim03G0094200 Rhododendron simsii HOM05D005886 ORTHO05D007512 4.0e-15 85.1 70 65.7
Atru.chr12.1089 Acer truncatum HOM05D005886 ORTHO05D007512 9.0e-15 84.0 64 65.6
Actinidia06678 Actinidia chinensis HOM05D005886 ORTHO05D007512 1.5e-14 83.2 70 64.3
CSS0035441 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 3.4e-14 82.0 69 63.8
PGR142G2015 Punica granatum HOM05D005886 ORTHO05D007512 5.8e-14 81.3 79 55.7
Hma1.2p1_0098F.1_g048230 Hydrangea macrophylla HOM05D005886 ORTHO05D007512 9.9e-14 80.5 58 70.7
TWI63G1702 Tripterygium wilfordii HOM05D005886 ORTHO05D007512 1.7e-13 79.7 58 69.0
DCAR_025632 Daucus carota HOM05D005886 ORTHO05D007512 2.9e-13 79.0 73 56.2
Gohir.A03G069600 Gossypium hirsutum HOM05D005886 ORTHO05D007512 3.8e-13 78.6 76 55.3
PGSC0003DMG400000991 Solanum tuberosum HOM05D005886 ORTHO05D007512 3.8e-13 78.6 58 65.5
CSS0026439 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 4.9e-13 78.2 69 66.7
Lj3A921T39 Lonicera japonica HOM05D005886 ORTHO05D007512 4.9e-13 78.2 69 62.3
Lj3A922T58 Lonicera japonica HOM05D005886 ORTHO05D007512 4.9e-13 78.2 69 62.3
Solyc11g006400.2 Solanum lycopersicum HOM05D005886 ORTHO05D007512 4.9e-13 78.2 58 65.5
Sopen11g002300 Solanum pennellii HOM05D005886 ORTHO05D007512 4.9e-13 78.2 58 65.5
SGA_v2.0_scaffold13G06426 Striga asiatica HOM05D005886 ORTHO05D007512 4.9e-13 78.2 61 62.3
CSS0019543 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 6.4e-13 77.8 69 66.7
CAN.G143.55 Capsicum annuum HOM05D005886 ORTHO05D007512 6.4e-13 77.8 58 65.5
Cc02_g09270 Coffea canephora HOM05D005886 ORTHO05D007512 6.4e-13 77.8 77 55.8
Gohir.D03G096100 Gossypium hirsutum HOM05D005886 ORTHO05D007512 6.4e-13 77.8 76 53.9
Gorai.003G100800 Gossypium raimondii HOM05D005886 ORTHO05D007512 6.4e-13 77.8 76 53.9
Nitab4.5_0011494g0010 Nicotiana tabacum HOM05D005886 ORTHO05D007512 6.4e-13 77.8 58 65.5
Dinv03810 Davidia involucrata HOM05D005886 ORTHO05D007512 1.1e-12 77.0 69 60.9
Phvul.008G268400 Phaseolus vulgaris HOM05D005886 ORTHO05D007512 1.9e-12 76.3 69 65.2
Sp7g30380 Schrenkiella parvula HOM05D005886 ORTHO05D007512 1.9e-12 76.3 58 67.2
Eucgr.G02665 Eucalyptus grandis HOM05D005886 ORTHO05D007512 2.4e-12 75.9 76 57.9
SalBow3G3384 Salvia bowleyana HOM05D005886 ORTHO05D007512 2.4e-12 75.9 71 53.5
A01p05780 Brassica napus HOM05D005886 ORTHO05D007512 3.2e-12 75.5 59 64.4
BraA01t00547Z Brassica rapa HOM05D005886 ORTHO05D007512 3.2e-12 75.5 59 64.4
MBI11_g01323_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 3.2e-12 75.5 71 57.7
AT4G32605 Arabidopsis thaliana HOM05D005886 ORTHO05D007512 4.2e-12 75.1 58 65.5
CiPaw.13G045200 Carya illinoinensis HOM05D005886 ORTHO05D007512 4.2e-12 75.1 69 59.4
BolC1t00631H Brassica oleracea HOM05D005886 ORTHO05D007512 5.4e-12 74.7 43 79.1
Cpa.g.sc33.126 Carica papaya HOM05D005886 ORTHO05D007512 5.4e-12 74.7 39 87.2
COL.COLO4_37594 Corchorus olitorius HOM05D005886 ORTHO05D007512 5.4e-12 74.7 81 51.9
Migut.F00830 Erythranthe guttata HOM05D005886 ORTHO05D007512 5.4e-12 74.7 69 56.5
MBI11_g46414_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 5.4e-12 74.7 71 56.3
Sed0002183 Sechium edule HOM05D005886 ORTHO05D007512 5.4e-12 74.7 50 66.0
AL7G19160 Arabidopsis lyrata HOM05D005886 ORTHO05D007512 7.1e-12 74.3 41 82.9
BcaC09g52051 Brassica carinata HOM05D005886 ORTHO05D007512 7.1e-12 74.3 43 79.1
Carub.0007s0794 Capsella rubella HOM05D005886 ORTHO05D007512 7.1e-12 74.3 41 82.9
AUR62013280 Chenopodium quinoa HOM05D005886 ORTHO05D007512 9.3e-12 73.9 59 69.5
Thhalv10026176m.g Eutrema salsugineum HOM05D005886 ORTHO05D007512 9.3e-12 73.9 40 85.0
Manes.10G059400 Manihot esculenta HOM05D005886 ORTHO05D007512 9.3e-12 73.9 51 64.7
Sc09g0004780 Simmondsia chinensis HOM05D005886 ORTHO05D007512 9.3e-12 73.9 54 72.2
Lalb_Chr04g0248371 Lupinus albus HOM05D005886 ORTHO05D007512 1.2e-11 73.6 70 55.7
TAR623G1656 Trochodendron aralioides HOM05D005886 ORTHO05D007512 1.2e-11 73.6 73 56.2
Aqoxy1G00613 Aquilegia oxysepala HOM05D005886 ORTHO05D007512 1.6e-11 73.2 58 65.5
ClCG08G008440 Citrullus lanatus HOM05D005886 ORTHO05D007512 1.6e-11 73.2 41 82.9
arahy.Tifrunner.gnm1.ann1.WENH69 Arachis hypogaea HOM05D005886 ORTHO05D007512 2.1e-11 72.8 74 55.4
FAN10G3562 Fragaria x ananassa HOM05D005886 ORTHO05D007512 2.1e-11 72.8 42 73.8
LjContig00272g0011155 Lotus japonicus HOM05D005886 ORTHO05D007512 2.1e-11 72.8 70 58.6
Thecc.03G100000 Theobroma cacao HOM05D005886 ORTHO05D007512 2.1e-11 72.8 74 54.1
MSTRG.9023 Avicennia marina HOM05D005886 ORTHO05D007512 2.7e-11 72.4 63 54.0
C01p06350 Brassica napus HOM05D005886 ORTHO05D007512 2.7e-11 72.4 43 76.7
FvH4_7g05470 Fragaria vesca HOM05D005886 ORTHO05D007512 2.7e-11 72.4 41 75.6
FAN01G0807 Fragaria x ananassa HOM05D005886 ORTHO05D007512 2.7e-11 72.4 69 50.7
FAN01G1003 Fragaria x ananassa HOM05D005886 ORTHO05D007512 2.7e-11 72.4 41 75.6
FAN03G3046 Fragaria x ananassa HOM05D005886 ORTHO05D007512 2.7e-11 72.4 41 75.6
FAN10G0591 Fragaria x ananassa HOM05D005886 ORTHO05D007512 2.7e-11 72.4 41 75.6
Nn6g34619 Nelumbo nucifera HOM05D005886 ORTHO05D007512 2.7e-11 72.4 58 58.6
Hund07230 Selenicereus undatus HOM05D005886 ORTHO05D007512 2.7e-11 72.4 47 74.5
Zm00001eb151940 Zea mays HOM05D005886 ORTHO05D007512 2.7e-11 72.4 66 56.1
arahy.Tifrunner.gnm1.ann1.884D9P Arachis hypogaea HOM05D005886 ORTHO05D007512 3.5e-11 72.0 76 53.9
arahy.Tifrunner.gnm1.ann1.V9EI6C Arachis hypogaea HOM05D005886 ORTHO05D007512 3.5e-11 72.0 76 53.9
arahy.Tifrunner.gnm1.ann1.VD7X19 Arachis hypogaea HOM05D005886 ORTHO05D007512 3.5e-11 72.0 76 53.9
Potri.010G244500 Populus trichocarpa HOM05D005886 ORTHO05D007512 3.5e-11 72.0 72 50.0
arahy.Tifrunner.gnm1.ann1.AJNI4B Arachis hypogaea HOM05D005886 ORTHO05D007512 6.0e-11 71.2 75 54.7
arahy.Tifrunner.gnm1.ann1.G6ZNRX Arachis hypogaea HOM05D005886 ORTHO05D007512 6.0e-11 71.2 75 54.7
CANSAT56G3685 Cannabis sativa HOM05D005886 ORTHO05D007512 6.0e-11 71.2 58 62.1
Glyma.14G022800 Glycine max HOM05D005886 ORTHO05D007512 7.9e-11 70.9 69 60.9
EL10Ac4g08740 Beta vulgaris HOM05D005886 ORTHO05D007512 1.0e-10 70.5 49 73.5
AUR62011207 Chenopodium quinoa HOM05D005886 ORTHO05D007512 1.0e-10 70.5 40 82.5
Potri.008G015600 Populus trichocarpa HOM05D005886 ORTHO05D007512 1.0e-10 70.5 72 51.4
QL04p048796 Quercus lobata HOM05D005886 ORTHO05D007512 1.0e-10 70.5 41 80.5
THA.LOC104803777 Tarenaya hassleriana HOM05D005886 ORTHO05D007512 1.0e-10 70.5 59 55.9
Sabra08G0009500 Salix brachista HOM05D005886 ORTHO05D007512 1.3e-10 70.1 72 51.4
ATR1127G050 Amborella trichopoda HOM05D005886 ORTHO05D007512 1.8e-10 69.7 41 75.6
ECA238G0088 Erigeron canadensis HOM05D005886 ORTHO05D007512 1.8e-10 69.7 52 65.4
PSO339G0105 Papaver somniferum HOM05D005886 ORTHO05D007512 1.8e-10 69.7 58 56.9
Ca_30698_v3 Cicer arietinum L. HOM05D005886 ORTHO05D007512 2.3e-10 69.3 69 53.6
Ciclev10016560m.g Citrus clementina HOM05D005886 ORTHO05D007512 2.3e-10 69.3 52 67.3
Duzib205G1746 Durio zibethinus HOM05D005886 ORTHO05D007512 3.9e-10 68.6 96 45.8
PSO384G2277 Papaver somniferum HOM05D005886 ORTHO05D007512 3.9e-10 68.6 71 50.7
RcHm_v2.0_Chr1g0332231 Rosa chinensis HOM05D005886 ORTHO05D007512 3.9e-10 68.6 41 70.7
Lsat_1_v5_gn_2_106281 Lactuca sativa HOM05D005886 ORTHO05D007512 5.1e-10 68.2 39 74.4
VMungo0647G0838 Vigna mungo HOM05D005886 ORTHO05D007512 5.1e-10 68.2 69 58.0
Cfa004262 Carpinus fangiana HOM05D005886 ORTHO05D007512 6.7e-10 67.8 41 70.7
Psat2g011680 Pisum sativum HOM05D005886 ORTHO05D007512 6.7e-10 67.8 69 52.2
TPR.G1192 Trifolium pratense HOM05D005886 ORTHO05D007512 6.7e-10 67.8 39 76.9
HanXRQChr07g0194431 Helianthus annuus HOM05D005886 ORTHO05D007512 8.7e-10 67.4 41 70.7
Prupe.2G074600 Prunus persica HOM05D005886 ORTHO05D007512 8.7e-10 67.4 77 46.8
HanXRQChr07g0186821 Helianthus annuus HOM05D005886 ORTHO05D007512 1.1e-09 67.0 41 68.3
Sabra10G0191000 Salix brachista HOM05D005886 ORTHO05D007512 1.1e-09 67.0 71 49.3
FvH4_7g05420 Fragaria vesca HOM05D005886 ORTHO05D007512 1.5e-09 66.6 37 78.4
HPP92_013285 Vanilla planifolia HOM05D005886 ORTHO05D007512 1.5e-09 66.6 39 71.8
HPP92_013299 Vanilla planifolia HOM05D005886 ORTHO05D007512 1.5e-09 66.6 39 71.8
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 2.5e-09 65.9 54 63.0
Os01g0771100 Oryza sativa ssp. japonica HOM05D005886 ORTHO05D007512 2.5e-09 65.9 37 73.0
CDE10G0808 Ceratophyllum demersum HOM05D005886 ORTHO05D007512 3.3e-09 65.5 41 65.9
Glyma.02G291900 Glycine max HOM05D005886 ORTHO05D007512 5.6e-09 64.7 69 56.5
BcaB05g22897 Brassica carinata HOM05D005886 ORTHO05D007512 7.4e-09 64.3 33 84.8
MELO3C019914.2 Cucumis melo HOM05D005886 ORTHO05D007512 1.3e-08 63.5 41 73.2
CsaV3_6G004430 Cucumis sativus L. HOM05D005886 ORTHO05D007512 1.3e-08 63.5 41 73.2
MD02G1258000 Malus domestica HOM05D005886 ORTHO05D007512 1.6e-08 63.2 58 46.6
Aa31sc91G60 Aethionema arabicum HOM05D005886 ORTHO05D007512 6.2e-08 61.2 33 81.8
Medtr5g093000 Medicago truncatula HOM05D005886 ORTHO05D007512 6.2e-08 61.2 69 49.3


User provided reference genes

Program Settings