Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 1.4e-63 246.5 165 100.0
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 2.4e-39 166.0 90 92.2
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 2.4e-39 166.0 85 94.1
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 2.4e-39 166.0 85 94.1
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 4.1e-39 165.2 85 92.9
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 9.2e-39 164.1 85 92.9
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 1.2e-38 163.7 88 89.8
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.2e-38 163.7 89 91.0
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.6e-38 163.3 84 94.0
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 1.6e-38 163.3 89 88.8
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.7e-38 162.5 89 91.0
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 3.5e-38 162.2 85 90.6
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 4.6e-38 161.8 85 91.8
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 4.6e-38 161.8 88 88.6
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 4.6e-38 161.8 85 91.8
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 4.6e-38 161.8 85 91.8
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 4.6e-38 161.8 84 92.9
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 6.0e-38 161.4 85 92.9
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 6.0e-38 161.4 85 90.6
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 6.0e-38 161.4 89 89.9
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 7.8e-38 161.0 84 92.9
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 7.8e-38 161.0 85 89.4
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 7.8e-38 161.0 84 92.9
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 7.8e-38 161.0 85 90.6
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 7.8e-38 161.0 85 90.6
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.0e-37 160.6 84 91.7
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 1.0e-37 160.6 84 91.7
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.0e-37 160.6 89 88.8
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.3e-37 160.2 89 88.8
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 1.3e-37 160.2 85 90.6
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.3e-37 160.2 85 91.8
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 1.7e-37 159.8 85 88.2
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 1.7e-37 159.8 85 90.6
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 2.3e-37 159.5 89 86.5
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 2.3e-37 159.5 93 84.9
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.3e-37 159.5 81 93.8
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 2.3e-37 159.5 85 91.8
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 2.3e-37 159.5 89 84.3
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 3.0e-37 159.1 83 92.8
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 3.9e-37 158.7 85 89.4
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 3.9e-37 158.7 89 86.5
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 3.9e-37 158.7 84 89.3
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 5.1e-37 158.3 85 88.2
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 5.1e-37 158.3 85 88.2
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 5.1e-37 158.3 85 88.2
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 5.1e-37 158.3 84 89.3
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 6.6e-37 157.9 85 89.4
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 6.6e-37 157.9 85 88.2
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 8.6e-37 157.5 81 92.6
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 8.6e-37 157.5 85 87.1
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 8.6e-37 157.5 85 89.4
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 8.6e-37 157.5 89 86.5
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.1e-36 157.1 84 90.5
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.1e-36 157.1 89 86.5
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 1.1e-36 157.1 87 87.4
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 1.5e-36 156.8 85 87.1
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.5e-36 156.8 85 88.2
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 1.5e-36 156.8 84 91.7
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.5e-36 156.8 84 90.5
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.9e-36 156.4 85 88.2
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 2.5e-36 156.0 85 89.4
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.3e-36 155.6 85 87.1
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.3e-36 155.2 85 87.1
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 5.6e-36 154.8 83 89.2
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 5.6e-36 154.8 85 88.2
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 5.6e-36 154.8 84 89.3
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 7.3e-36 154.5 85 87.1
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 7.3e-36 154.5 87 85.1
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 9.6e-36 154.1 85 85.9
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 9.6e-36 154.1 84 89.3
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.2e-35 153.7 90 86.7
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.2e-35 153.7 90 86.7
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.2e-35 153.7 85 85.9
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.2e-35 153.7 84 89.3
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 1.2e-35 153.7 84 88.1
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.6e-35 153.3 89 83.1
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.6e-35 153.3 86 87.2
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 2.1e-35 152.9 83 89.2
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.1e-35 152.9 85 84.7
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 2.8e-35 152.5 84 88.1
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 4.7e-35 151.8 88 81.8
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 4.7e-35 151.8 86 87.2
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 6.2e-35 151.4 84 86.9
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 8.1e-35 151.0 82 87.8
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 1.1e-34 150.6 86 80.2
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 1.4e-34 150.2 84 85.7
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.4e-34 150.2 84 88.1
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 3.1e-34 149.1 90 84.4
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 3.1e-34 149.1 86 84.9
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 4.0e-34 148.7 85 83.5
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 4.0e-34 148.7 89 80.9
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 5.2e-34 148.3 78 92.3
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 5.2e-34 148.3 86 84.9
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 6.9e-34 147.9 85 85.9
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 8.9e-34 147.5 86 87.2
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 8.9e-34 147.5 84 88.1
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 8.9e-34 147.5 84 88.1
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 8.9e-34 147.5 84 88.1
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 1.2e-33 147.1 85 83.5
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 1.2e-33 147.1 84 86.9
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 1.2e-33 147.1 90 84.4
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 1.5e-33 146.7 84 85.7
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 1.5e-33 146.7 86 83.7
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 2.0e-33 146.4 86 83.7
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 2.6e-33 146.0 84 85.7
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 3.4e-33 145.6 84 85.7
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 5.8e-33 144.8 82 87.8
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 5.8e-33 144.8 82 87.8
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 5.8e-33 144.8 82 87.8
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 5.8e-33 144.8 90 82.2
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 5.8e-33 144.8 82 87.8
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 5.8e-33 144.8 81 84.0
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 7.6e-33 144.4 84 78.6
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 1.3e-32 143.7 82 86.6
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 1.7e-32 143.3 87 75.9
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 1.7e-32 143.3 87 75.9
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 2.2e-32 142.9 81 82.7
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 3.8e-32 142.1 85 78.8
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 6.4e-32 141.4 84 83.3
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 8.4e-32 141.0 72 91.7
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.7e-30 136.0 73 86.3
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 1.3e-29 133.7 70 88.6
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 2.3e-29 132.9 71 85.9
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 3.9e-29 132.1 75 84.0
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 2.5e-28 129.4 69 84.1
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.3e-27 127.1 124 58.9
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 5.3e-26 121.7 68 83.8
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 1.6e-22 110.2 82 64.6
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 2.7e-22 109.4 82 65.9
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 1.5e-20 103.6 82 61.0
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 9.6e-20 100.9 60 80.0
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 2.1e-19 99.8 65 78.5
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 8.1e-19 97.8 80 58.8
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 2.4e-18 96.3 90 53.3
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 4.5e-17 92.0 80 53.8
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 5.8e-17 91.7 47 91.5
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 1.4e-15 87.0 47 83.0
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 5.5e-15 85.1 48 81.2
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 7.1e-15 84.7 47 83.0
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 3.5e-14 82.4 56 73.2
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.3e-11 73.9 64 60.9
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 6.9e-10 68.2 67 50.7
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 1.0e-08 64.3 42 73.8
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 3.2e-07 59.3 39 61.5


User provided reference genes

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