Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 4.8e-216 754.2 376 100.0
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 8.7e-194 680.2 374 88.8
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.4e-191 672.9 374 88.0
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 4.1e-191 671.4 373 86.6
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 9.0e-191 670.2 373 86.3
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.2e-190 669.8 374 87.4
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 1.2e-190 669.8 372 87.4
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 1.5e-190 669.5 373 87.7
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 2.0e-190 669.1 373 87.7
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 2.6e-190 668.7 376 87.5
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 3.4e-190 668.3 373 86.6
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 4.5e-190 667.9 369 88.6
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 1.7e-189 666.0 373 85.8
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 2.9e-189 665.2 369 88.1
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 1.9e-188 662.5 375 86.7
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 2.5e-188 662.1 372 85.8
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 9.4e-188 660.2 372 85.5
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 2.1e-187 659.1 372 85.5
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 2.1e-187 659.1 388 83.0
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 4.6e-187 657.9 373 86.6
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 4.6e-187 657.9 372 85.8
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 6.1e-187 657.5 373 86.6
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 6.1e-187 657.5 372 85.2
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 1.4e-186 656.4 368 85.3
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 3.0e-186 655.2 377 84.1
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 3.9e-186 654.8 374 84.8
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 5.1e-186 654.4 369 86.4
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 6.7e-186 654.1 376 84.0
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 1.1e-185 653.3 376 84.3
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 2.0e-185 652.5 376 83.0
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 2.0e-185 652.5 380 83.9
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 2.5e-185 652.1 376 83.5
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 2.5e-185 652.1 376 84.3
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 4.3e-185 651.4 368 85.1
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 5.7e-185 651.0 368 85.1
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 5.7e-185 651.0 369 85.9
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 7.4e-185 650.6 376 84.0
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 7.4e-185 650.6 376 85.1
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 1.7e-184 649.4 365 86.3
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 1.7e-184 649.4 382 83.0
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 2.2e-184 649.0 369 86.2
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 2.2e-184 649.0 376 82.7
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 2.8e-184 648.7 374 84.5
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 3.7e-184 648.3 375 84.0
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 3.7e-184 648.3 376 83.2
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 6.3e-184 647.5 369 84.8
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 8.2e-184 647.1 376 83.5
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 1.1e-183 646.7 367 85.0
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 1.1e-183 646.7 368 84.2
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 1.4e-183 646.4 380 82.6
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 1.8e-183 646.0 368 84.2
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 5.3e-183 644.4 397 80.6
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 9.1e-183 643.7 368 85.1
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 2.0e-182 642.5 385 82.6
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 2.0e-182 642.5 376 81.9
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 2.6e-182 642.1 376 84.0
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 3.4e-182 641.7 376 83.5
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 3.4e-182 641.7 403 80.1
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 1.0e-181 640.2 374 83.4
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.3e-181 639.8 376 80.9
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 2.2e-181 639.0 375 84.0
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 2.9e-181 638.6 363 84.6
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 2.9e-181 638.6 363 84.6
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 3.8e-181 638.3 382 81.4
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 1.1e-180 636.7 377 82.2
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 1.9e-180 636.0 369 83.5
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 4.2e-180 634.8 375 82.1
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 7.2e-180 634.0 375 83.2
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 9.4e-180 633.6 402 77.6
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 3.6e-179 631.7 376 82.4
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 3.6e-179 631.7 377 81.2
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 3.6e-179 631.7 369 83.2
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 1.8e-178 629.4 368 82.6
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 2.3e-178 629.0 376 81.1
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 3.0e-178 628.6 368 82.6
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 3.0e-178 628.6 368 82.9
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 3.9e-178 628.2 376 81.9
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 5.7e-177 624.4 380 81.3
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 9.7e-177 623.6 360 83.3
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 1.7e-176 622.9 357 83.8
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 1.7e-176 622.9 368 82.3
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 2.2e-176 622.5 409 75.8
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 2.2e-176 622.5 357 83.5
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 2.8e-176 622.1 368 81.0
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 2.8e-176 622.1 364 82.7
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 1.8e-175 619.4 357 83.5
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 2.4e-175 619.0 357 83.2
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 4.1e-175 618.2 357 83.2
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 7.0e-175 617.5 357 84.0
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 2.0e-174 615.9 359 82.5
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 4.5e-174 614.8 388 78.6
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 7.7e-174 614.0 439 72.4
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 1.3e-173 613.2 381 79.0
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 1.7e-173 612.8 357 82.1
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 2.9e-173 612.1 363 82.9
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 8.5e-173 610.5 357 81.8
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 1.1e-172 610.1 357 82.6
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 2.5e-172 609.0 370 80.3
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 2.5e-172 609.0 370 80.3
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 3.2e-172 608.6 365 80.5
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 3.2e-172 608.6 365 80.5
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 4.2e-172 608.2 364 81.9
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 5.5e-172 607.8 365 82.2
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 1.2e-171 606.7 357 82.4
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 1.2e-171 606.7 357 82.4
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 2.1e-171 605.9 375 79.2
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 2.6e-166 589.0 335 86.9
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 5.9e-166 587.8 417 72.2
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 1.7e-165 586.3 324 87.0
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 7.2e-164 580.9 372 77.4
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 1.7e-160 569.7 333 82.9
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 9.1e-159 563.9 357 78.2
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 2.4e-151 539.3 369 70.7
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 2.9e-149 532.3 360 70.6
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 7.2e-148 527.7 362 69.3
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 1.1e-143 513.8 442 62.2
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 7.0e-143 511.1 376 70.2
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 5.6e-140 501.5 285 82.8
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 1.3e-136 490.3 358 66.5
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 7.0e-135 484.6 372 68.3
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 1.5e-132 476.9 308 76.6
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 1.3e-128 463.8 350 62.6
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 7.6e-121 438.0 365 59.2
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 2.4e-119 433.0 310 73.2
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 4.1e-119 432.2 252 84.1
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 2.1e-115 419.9 299 71.2
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 8.7e-109 397.9 248 79.0
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 4.4e-105 385.6 264 70.1
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 2.1e-102 376.7 371 55.5
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 6.6e-101 371.7 262 72.9
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 6.5e-88 328.6 371 50.1
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.0e-85 321.2 178 87.1
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.6e-83 313.9 179 85.5
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 1.4e-82 310.8 170 91.2
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 9.0e-74 281.6 191 75.9
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 2.6e-65 253.4 148 81.8
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 2.6e-65 253.4 148 81.8
DCAR_023441 Daucus carota HOM05D004678 ORTHO05D005880 1.1e-58 231.5 159 75.5
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 1.1e-58 231.5 124 88.7
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 6.1e-54 215.7 143 69.9
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.2e-49 201.4 128 73.4
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 4.7e-46 189.5 167 61.1
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 1.4e-37 161.4 86 87.2
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 6.8e-37 159.1 182 54.9
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 6.3e-35 152.5 372 32.3
SHI09055 Sapria himalayana HOM05D004678 ORTHO05D005880 7.7e-33 145.6 90 76.7
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 8.6e-32 142.1 127 56.7
Psat0s2699g0120 Pisum sativum HOM05D004678 ORTHO05D005880 9.5e-31 138.7 79 83.5
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.3e-27 128.3 127 55.1
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.3e-27 128.3 120 57.5
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 5.9e-25 119.4 168 43.5
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 8.9e-21 105.5 63 77.8
PRCOL_00006728 Prasinoderma coloniale HOM05D004678 ORTHO05D333305 8.6e-16 89.0 413 25.9
Psat0s2699g0200 Pisum sativum HOM05D004678 ORTHO05D043902 2.5e-15 87.4 50 84.0
Zm00001eb146400 Zea mays HOM05D003605 ORTHO05D004292 1.5e-12 78.2 319 27.0
Pp3s32_480 Physcomitrium patens HOM05D003605 ORTHO05D309393 6.4e-11 72.8 186 29.6
Lsat_1_v5_gn_7_11140 Lactuca sativa HOM05D002771 ORTHO05D003078 5.4e-10 69.7 255 27.8
COL.COLO4_19765 Corchorus olitorius HOM05D004678 ORTHO05D005880 1.6e-09 68.2 38 76.3
ClCG07G009440 Citrullus lanatus HOM05D003605 ORTHO05D004292 2.7e-09 67.4 293 24.6
CsaV3_4G000360 Cucumis sativus L. HOM05D003605 ORTHO05D004292 3.5e-09 67.0 292 24.0
Pp3c20_8270 Physcomitrium patens HOM05D004697 ORTHO05D006015 4.6e-09 66.6 370 23.8
AUR62000485 Chenopodium quinoa HOM05D003605 ORTHO05D004292 6.0e-09 66.2 202 29.7
Pp3s46_180 Physcomitrium patens HOM05D002465 ORTHO05D028651 6.0e-09 66.2 246 24.8
Sed0022642 Sechium edule HOM05D003605 ORTHO05D004292 6.0e-09 66.2 292 24.0
COL.COLO4_09912 Corchorus olitorius HOM05D003605 ORTHO05D004292 1.0e-08 65.5 260 23.8
Mapoly0192s0009 Marchantia polymorpha HOM05D004697 ORTHO05D006015 1.0e-08 65.5 367 25.3
Phvul.002G262100 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 1.0e-08 65.5 285 23.9
Cpa.g.sc36.33 Carica papaya HOM05D002771 ORTHO05D003078 1.7e-08 64.7 245 22.4
MELO3C017998.2 Cucumis melo HOM05D003605 ORTHO05D004292 2.3e-08 64.3 303 22.8
EL10Ac4g09572 Beta vulgaris HOM05D003605 ORTHO05D004292 3.9e-08 63.5 208 28.4
CiPaw.03G138800 Carya illinoinensis HOM05D003605 ORTHO05D004292 3.9e-08 63.5 252 26.2
TPR.G2157 Trifolium pratense HOM05D003605 ORTHO05D004292 3.9e-08 63.5 250 25.2
CBR_g36553 Chara braunii HOM05D003605 ORTHO05D003078 5.1e-08 63.2 166 28.3
Sed0024954 Sechium edule HOM05D003605 ORTHO05D004292 5.1e-08 63.2 249 26.1
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 6.6e-08 62.8 29 93.1
Lj1A20T48 Lonicera japonica HOM05D002771 ORTHO05D003078 8.6e-08 62.4 236 26.3
Lalb_Chr21g0309431 Lupinus albus HOM05D002771 ORTHO05D003078 1.5e-07 61.6 232 27.6
ECA236G0232 Erigeron canadensis HOM05D002771 ORTHO05D003078 5.6e-07 59.7 255 25.1
AUR62036044 Chenopodium quinoa HOM05D000658 ORTHO05D000826 9.5e-07 58.9 253 27.7
Ah.01g021080 Amaranthus hybridus HOM05D004697 ORTHO05D006015 1.6e-06 58.2 267 24.7
Manes.01G225000 Manihot esculenta HOM05D002771 ORTHO05D003078 1.6e-06 58.2 253 24.5
Lsat_1_v5_gn_4_104321 Lactuca sativa HOM05D004697 ORTHO05D006015 2.1e-06 57.8 211 24.2
AUR62038977 Chenopodium quinoa HOM05D000658 ORTHO05D000826 2.8e-06 57.4 243 26.3
Ca_07941_v3 Cicer arietinum L. HOM05D000418 ORTHO05D000317 2.8e-06 57.4 170 28.2
CDE01G0614 Ceratophyllum demersum HOM05D004697 ORTHO05D006015 6.2e-06 56.2 318 24.5
PGSC0003DMG400021651 Solanum tuberosum HOM05D000418 ORTHO05D000317 6.2e-06 56.2 166 27.1


User provided reference genes

Program Settings