Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01034336001 Vitis vinifera HOM05D001168 ORTHO05D019490 4.1e-55 217.6 96 100.0
GSVIVG01034337001 Vitis vinifera HOM05D001168 ORTHO05D001044 2.8e-11 72.0 34 88.2
arahy.Tifrunner.gnm1.ann1.6Y2PGB Arachis hypogaea HOM05D001168 ORTHO05D001044 3.2e-07 58.5 31 74.2
Cfa017817 Carpinus fangiana HOM05D001168 ORTHO05D001044 3.2e-07 58.5 30 80.0
BraA02t04954Z Brassica rapa HOM05D001168 ORTHO05D001044 4.2e-07 58.2 28 78.6
Cc04_g14280 Coffea canephora HOM05D001168 ORTHO05D001044 4.2e-07 58.2 27 81.5
Eucgr.J00326 Eucalyptus grandis HOM05D001168 ORTHO05D001044 4.2e-07 58.2 31 77.4
FvH4_2g12370 Fragaria vesca HOM05D001168 ORTHO05D001044 4.2e-07 58.2 39 61.5
PGR044G0807 Punica granatum HOM05D001168 ORTHO05D001044 4.2e-07 58.2 31 77.4
FAN24G0097 Fragaria x ananassa HOM05D001168 ORTHO05D001044 5.4e-07 57.8 39 61.5
Lalb_Chr01g0023791 Lupinus albus HOM05D001168 ORTHO05D001044 5.4e-07 57.8 32 68.8
arahy.Tifrunner.gnm1.ann1.F795UE Arachis hypogaea HOM05D001168 ORTHO05D001044 9.3e-07 57.0 29 75.9
arahy.Tifrunner.gnm1.ann1.FTM745 Arachis hypogaea HOM05D001168 ORTHO05D001044 9.3e-07 57.0 31 71.0
arahy.Tifrunner.gnm1.ann1.KWHJ4Z Arachis hypogaea HOM05D001168 ORTHO05D001044 9.3e-07 57.0 29 75.9
Eucgr.J00325 Eucalyptus grandis HOM05D001168 ORTHO05D001044 9.3e-07 57.0 31 74.2
FvH4_4g37361 Fragaria vesca HOM05D001168 ORTHO05D001044 9.3e-07 57.0 26 80.8
FAN17G0501 Fragaria x ananassa HOM05D001168 ORTHO05D001044 9.3e-07 57.0 26 80.8
Nn3g18519 Nelumbo nucifera HOM05D001168 ORTHO05D001044 9.3e-07 57.0 26 88.5
RcHm_v2.0_Chr4g0447241 Rosa chinensis HOM05D001168 ORTHO05D001044 9.3e-07 57.0 26 80.8
ClCG11G012810 Citrullus lanatus HOM05D001168 ORTHO05D001044 1.2e-06 56.6 26 84.6
MELO3C011770.2 Cucumis melo HOM05D001168 ORTHO05D001044 1.2e-06 56.6 26 84.6
CsaV3_5G029180 Cucumis sativus L. HOM05D001168 ORTHO05D001044 1.2e-06 56.6 26 84.6
Glyma.18G215700 Glycine max HOM05D001168 ORTHO05D001044 1.2e-06 56.6 29 75.9
Lj1g0001143 Lotus japonicus HOM05D001168 ORTHO05D001044 1.2e-06 56.6 29 75.9
TPR.G24300 Trifolium pratense HOM05D001168 ORTHO05D001044 1.2e-06 56.6 31 74.2
Atru.chr11.25 Acer truncatum HOM05D001168 ORTHO05D001044 1.6e-06 56.2 45 53.3
Atru.chr11.29 Acer truncatum HOM05D001168 ORTHO05D001044 1.6e-06 56.2 45 53.3
Aa31LG3G18200 Aethionema arabicum HOM05D001168 ORTHO05D001044 1.6e-06 56.2 33 66.7
Medtr7g073640 Medicago truncatula HOM05D001168 ORTHO05D001044 1.6e-06 56.2 29 75.9
Peaxi162Scf00329g00431 Petunia axillaris HOM05D001168 ORTHO05D001044 1.6e-06 56.2 25 84.0
RcHm_v2.0_Chr6g0272391 Rosa chinensis HOM05D001168 ORTHO05D001044 1.6e-06 56.2 25 84.0
VMungo1383G1692 Vigna mungo HOM05D001168 ORTHO05D001044 1.6e-06 56.2 29 72.4
CARHR204670 Cardamine hirsuta HOM05D001168 ORTHO05D001044 2.1e-06 55.8 41 56.1
CiPaw.15G000400 Carya illinoinensis HOM05D001168 ORTHO05D001044 2.1e-06 55.8 26 80.8
MD13G1000400 Malus domestica HOM05D001168 ORTHO05D001044 2.1e-06 55.8 25 84.0
MD16G1012500 Malus domestica HOM05D001168 ORTHO05D019490 2.1e-06 55.8 25 84.0
Medtr7g073650 Medicago truncatula HOM05D001168 ORTHO05D001044 2.1e-06 55.8 29 75.9
RcHm_v2.0_Chr4g0397131 Rosa chinensis HOM05D001168 ORTHO05D001044 2.1e-06 55.8 26 84.6
Sed0009783 Sechium edule HOM05D001168 ORTHO05D001044 2.1e-06 55.8 23 91.3
TWI77G0726 Tripterygium wilfordii HOM05D001168 ORTHO05D001044 2.1e-06 55.8 26 76.9
MBI06_g06411_MAGBIO Magnolia biondii HOM05D001168 ORTHO05D001044 2.7e-06 55.5 26 76.9
MBI15_g19868_MAGBIO Magnolia biondii HOM05D001168 ORTHO05D001044 2.7e-06 55.5 26 76.9
Dinv11741 Davidia involucrata HOM05D001168 ORTHO05D001044 3.5e-06 55.1 26 80.8
FvH4_4g05940 Fragaria vesca HOM05D001168 ORTHO05D001044 3.5e-06 55.1 26 80.8
FAN07G2446 Fragaria x ananassa HOM05D001168 ORTHO05D001044 3.5e-06 55.1 26 80.8
FAN12G1796 Fragaria x ananassa HOM05D001168 ORTHO05D001044 3.5e-06 55.1 26 80.8
FAN17G3136 Fragaria x ananassa HOM05D001168 ORTHO05D001044 3.5e-06 55.1 26 80.8
FAN27G1513 Fragaria x ananassa HOM05D001168 ORTHO05D001044 3.5e-06 55.1 39 59.0
Hma1.2p1_0816F.1_g223060 Hydrangea macrophylla HOM05D001168 ORTHO05D001044 3.5e-06 55.1 26 80.8
Nn4g25042 Nelumbo nucifera HOM05D001168 ORTHO05D001044 3.5e-06 55.1 28 75.0
Sp6g34570 Schrenkiella parvula HOM05D001168 ORTHO05D001044 3.5e-06 55.1 26 76.9
VMungo0331G1802 Vigna mungo HOM05D001168 ORTHO05D001044 3.5e-06 55.1 25 80.0
BcaC03g13225 Brassica carinata HOM05D001168 ORTHO05D001044 4.6e-06 54.7 26 80.8
BolC2t06315H Brassica oleracea HOM05D001168 ORTHO05D001044 4.6e-06 54.7 26 80.8
Cpa.g.sc774.1 Carica papaya HOM05D001168 ORTHO05D001044 4.6e-06 54.7 28 75.0
Hma1.2p1_1035F.1_g250430 Hydrangea macrophylla HOM05D001168 ORTHO05D001044 4.6e-06 54.7 26 80.8
Oeu044041.2 Olea europaea HOM05D001168 ORTHO05D001044 4.6e-06 54.7 24 87.5
Oeu061715.1 Olea europaea HOM05D001168 ORTHO05D001044 4.6e-06 54.7 24 87.5
Phvul.008G081100 Phaseolus vulgaris HOM05D001168 ORTHO05D001044 4.6e-06 54.7 29 72.4
Sabra10G0198600 Salix brachista HOM05D001168 ORTHO05D001044 4.6e-06 54.7 26 80.8
Sed0024113 Sechium edule HOM05D001168 ORTHO05D001044 4.6e-06 54.7 23 87.0
Atru.chr2.1197 Acer truncatum HOM05D001168 ORTHO05D001044 6.0e-06 54.3 23 87.0
Dinv17662 Davidia involucrata HOM05D001168 ORTHO05D001044 6.0e-06 54.3 38 63.2
Glyma.09G273400 Glycine max HOM05D001168 ORTHO05D001044 6.0e-06 54.3 34 70.6
Nitab4.5_0000129g0160 Nicotiana tabacum HOM05D001168 ORTHO05D001044 6.0e-06 54.3 25 80.0
Peaxi162Scf00185g00822 Petunia axillaris HOM05D001168 ORTHO05D001044 6.0e-06 54.3 26 76.9
Potri.010G255200 Populus trichocarpa HOM05D001168 ORTHO05D001044 6.0e-06 54.3 27 77.8
Rhsim09G0028800 Rhododendron simsii HOM05D001168 ORTHO05D001044 6.0e-06 54.3 26 76.9
TAR365G1080 Trochodendron aralioides HOM05D001168 ORTHO05D001044 6.0e-06 54.3 23 87.0
BcaB01g05605 Brassica carinata HOM05D001168 ORTHO05D001044 7.8e-06 53.9 23 87.0
BcaB01g05609 Brassica carinata HOM05D001168 ORTHO05D001044 7.8e-06 53.9 23 87.0
A03p03800 Brassica napus HOM05D001168 ORTHO05D001044 7.8e-06 53.9 23 87.0
C02p03570 Brassica napus HOM05D001168 ORTHO05D001044 7.8e-06 53.9 23 87.0
C03p04280 Brassica napus HOM05D001168 ORTHO05D001044 7.8e-06 53.9 23 87.0
BolC3t12961H Brassica oleracea HOM05D001168 ORTHO05D001044 7.8e-06 53.9 23 87.0
BraA03t09727Z Brassica rapa HOM05D001168 ORTHO05D001044 7.8e-06 53.9 23 87.0
Carub.0006s0728 Capsella rubella HOM05D001168 ORTHO05D001044 7.8e-06 53.9 23 87.0
Ca_07771_v3 Cicer arietinum L. HOM05D001168 ORTHO05D001044 7.8e-06 53.9 29 72.4
Ca_07778_v3 Cicer arietinum L. HOM05D001168 ORTHO05D001044 7.8e-06 53.9 29 72.4
PSO063G7588 Papaver somniferum HOM05D001168 ORTHO05D001044 7.8e-06 53.9 23 87.0
Prupe.1G352200 Prunus persica HOM05D001168 ORTHO05D001044 7.8e-06 53.9 26 76.9


User provided reference genes

Program Settings