Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01034289001 Vitis vinifera HOM05D003475 ORTHO05D004155 1.3e-33 145.6 62 100.0
Hma1.2p1_0260F.1_g104710 Hydrangea macrophylla HOM05D003475 ORTHO05D004155 5.2e-11 70.5 38 73.7
CsaV3_4G034080 Cucumis sativus L. HOM05D003475 ORTHO05D004155 5.8e-10 67.0 38 73.7
ClCG05G019590 Citrullus lanatus HOM05D003475 ORTHO05D004155 1.3e-09 65.9 38 71.1
Oeu032239.1 Olea europaea HOM05D003475 ORTHO05D004155 2.9e-09 64.7 35 68.6
Peaxi162Scf00003g01723 Petunia axillaris HOM05D003475 ORTHO05D004155 2.9e-09 64.7 44 59.1
THA.LOC104823807 Tarenaya hassleriana HOM05D003475 ORTHO05D004155 2.9e-09 64.7 40 65.0
AL7G45140 Arabidopsis lyrata HOM05D003475 ORTHO05D004155 3.7e-09 64.3 40 65.0
AT5G36210 Arabidopsis thaliana HOM05D003475 ORTHO05D004155 3.7e-09 64.3 40 65.0
A08p00170 Brassica napus HOM05D003475 ORTHO05D004155 3.7e-09 64.3 40 65.0
Carub.0007s3188 Capsella rubella HOM05D003475 ORTHO05D004155 3.7e-09 64.3 40 65.0
CARHR216560 Cardamine hirsuta HOM05D003475 ORTHO05D004155 3.7e-09 64.3 40 65.0
Ca_05516_v3 Cicer arietinum L. HOM05D003475 ORTHO05D004155 3.7e-09 64.3 38 65.8
Thhalv10003712m.g Eutrema salsugineum HOM05D003475 ORTHO05D004155 3.7e-09 64.3 40 65.0
Lj9A359T75 Lonicera japonica HOM05D003475 ORTHO05D004155 3.7e-09 64.3 40 65.0
MD08G1107200 Malus domestica HOM05D003475 ORTHO05D004155 3.7e-09 64.3 33 72.7
Potri.002G128700 Populus trichocarpa HOM05D003475 ORTHO05D004155 3.7e-09 64.3 40 65.0
Prupe.1G441500 Prunus persica HOM05D003475 ORTHO05D004155 3.7e-09 64.3 33 72.7
Sp7g05960 Schrenkiella parvula HOM05D003475 ORTHO05D004155 3.7e-09 64.3 40 65.0
Lj4C50T5 Lonicera japonica HOM05D003475 ORTHO05D004155 4.9e-09 63.9 33 75.8
MD15G1087800 Malus domestica HOM05D003475 ORTHO05D004155 4.9e-09 63.9 35 68.6
Nitab4.5_0000876g0160 Nicotiana tabacum HOM05D003475 ORTHO05D004155 4.9e-09 63.9 38 65.8
PSO541G5638 Papaver somniferum HOM05D003475 ORTHO05D004155 4.9e-09 63.9 38 65.8
PSO675G3306 Papaver somniferum HOM05D003475 ORTHO05D004155 4.9e-09 63.9 38 65.8
Sed0005929 Sechium edule HOM05D003475 ORTHO05D004155 4.9e-09 63.9 38 71.1
Eucgr.F00027 Eucalyptus grandis HOM05D003475 ORTHO05D004155 6.4e-09 63.5 40 57.5
Manes.18G034500 Manihot esculenta HOM05D003475 ORTHO05D004155 6.4e-09 63.5 40 65.0
Psat5g180320 Pisum sativum HOM05D003475 ORTHO05D004155 6.4e-09 63.5 38 65.8
Thecc.08G013900 Theobroma cacao HOM05D003475 ORTHO05D004155 6.4e-09 63.5 41 63.4
TPR.G16593 Trifolium pratense HOM05D003475 ORTHO05D004155 6.4e-09 63.5 38 65.8
GSVIVG01009564001 Vitis vinifera HOM05D003475 ORTHO05D004155 6.4e-09 63.5 40 62.5
COL.COLO4_26452 Corchorus olitorius HOM05D003475 ORTHO05D004155 8.3e-09 63.2 40 62.5
DCAR_008786 Daucus carota HOM05D003475 ORTHO05D004155 8.3e-09 63.2 35 71.4
Nitab4.5_0002673g0070 Nicotiana tabacum HOM05D003475 ORTHO05D004155 8.3e-09 63.2 38 65.8
Sabra02G0100800 Salix brachista HOM05D003475 ORTHO05D004155 8.3e-09 63.2 40 62.5
TWI56G0590 Tripterygium wilfordii HOM05D003475 ORTHO05D004155 8.3e-09 63.2 40 62.5
Cfa018505 Carpinus fangiana HOM05D003475 ORTHO05D004155 1.1e-08 62.8 40 60.0
CiPaw.15G063700 Carya illinoinensis HOM05D003475 ORTHO05D004155 1.1e-08 62.8 40 57.5
TWI56G1470 Tripterygium wilfordii HOM05D003475 ORTHO05D004155 1.1e-08 62.8 34 73.5
Aa31LG9G17910 Aethionema arabicum HOM05D003475 ORTHO05D004155 1.4e-08 62.4 40 62.5
C03p93340 Brassica napus HOM05D003475 ORTHO05D004155 1.4e-08 62.4 40 62.5
BraA08t32073Z Brassica rapa HOM05D003475 ORTHO05D004155 1.4e-08 62.4 40 62.5
CANSAT25G2609 Cannabis sativa HOM05D003475 ORTHO05D004155 1.4e-08 62.4 40 62.5
Dinv42129 Davidia involucrata HOM05D003475 ORTHO05D004155 1.4e-08 62.4 40 62.5
Glyma.08G315400 Glycine max HOM05D003475 ORTHO05D004155 1.4e-08 62.4 38 63.2
THA.LOC104821889 Tarenaya hassleriana HOM05D003475 ORTHO05D004155 1.4e-08 62.4 40 62.5
vmacro21560 Vaccinium macrocarpon HOM05D003475 ORTHO05D004155 1.4e-08 62.4 42 57.1
arahy.Tifrunner.gnm1.ann1.DEGU9R Arachis hypogaea HOM05D003475 ORTHO05D004155 1.9e-08 62.0 38 65.8
Eucgr.F00026 Eucalyptus grandis HOM05D003475 ORTHO05D004155 1.9e-08 62.0 40 60.0
FvH4_2g34950 Fragaria vesca HOM05D003475 ORTHO05D004155 1.9e-08 62.0 36 63.9
BolC3t21632H Brassica oleracea HOM05D003475 ORTHO05D004155 2.4e-08 61.6 40 62.5
GSVIVG01009565001 Vitis vinifera HOM05D003475 ORTHO05D004155 2.4e-08 61.6 40 62.5
Actinidia15262 Actinidia chinensis HOM05D003475 ORTHO05D004155 3.2e-08 61.2 40 60.0
CSS0002070 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 3.2e-08 61.2 40 60.0
CSS0021204 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 3.2e-08 61.2 40 60.0
Lsat_1_v5_gn_1_54780 Lactuca sativa HOM05D003475 ORTHO05D004155 3.2e-08 61.2 36 63.9
Cc10_g03890 Coffea canephora HOM05D003475 ORTHO05D004155 4.1e-08 60.8 33 72.7
DCAR_003620 Daucus carota HOM05D003475 ORTHO05D004155 4.1e-08 60.8 40 60.0
Migut.C00608 Erythranthe guttata HOM05D003475 ORTHO05D004155 4.1e-08 60.8 40 57.5
PSO675G9051 Papaver somniferum HOM05D003475 ORTHO05D004155 4.1e-08 60.8 38 63.2
Phvul.006G042600 Phaseolus vulgaris HOM05D003475 ORTHO05D004155 4.1e-08 60.8 32 75.0
Rhsim06G0046300 Rhododendron simsii HOM05D003475 ORTHO05D004155 4.1e-08 60.8 42 57.1
Atru.chr13.624 Acer truncatum HOM05D003475 ORTHO05D004155 5.4e-08 60.5 35 62.9
Actinidia27942 Actinidia chinensis HOM05D003475 ORTHO05D004155 5.4e-08 60.5 40 62.5
SGA_v2.0_scaffold217G42435 Striga asiatica HOM05D003475 ORTHO05D004155 5.4e-08 60.5 33 69.7
vmacro19485 Vaccinium macrocarpon HOM05D003475 ORTHO05D004155 5.4e-08 60.5 38 63.2
CAN.G1288.14 Capsicum annuum HOM05D003475 ORTHO05D004155 7.1e-08 60.1 49 51.0
AUR62040061 Chenopodium quinoa HOM05D003475 ORTHO05D004155 7.1e-08 60.1 39 61.5
Lalb_Chr18g0049301 Lupinus albus HOM05D003475 ORTHO05D004155 7.1e-08 60.1 38 60.5
Cpa.g.c26337.1 Carica papaya HOM05D003475 ORTHO05D004155 9.2e-08 59.7 38 63.2
Dinv36000 Davidia involucrata HOM05D003475 ORTHO05D004155 9.2e-08 59.7 40 62.5
Duzib116G0360 Durio zibethinus HOM05D003475 ORTHO05D004155 9.2e-08 59.7 40 57.5
FAN15G0079 Fragaria x ananassa HOM05D003475 ORTHO05D004155 9.2e-08 59.7 35 62.9
FAN27G1383 Fragaria x ananassa HOM05D003475 ORTHO05D004155 9.2e-08 59.7 35 62.9
Lj6g0027326 Lotus japonicus HOM05D003475 ORTHO05D004155 9.2e-08 59.7 38 63.2
Medtr3g051310 Medicago truncatula HOM05D003475 ORTHO05D004155 9.2e-08 59.7 38 60.5
PSO675G3178 Papaver somniferum HOM05D003475 ORTHO05D004155 9.2e-08 59.7 38 63.2
Peaxi162Scf00929g00519 Petunia axillaris HOM05D003475 ORTHO05D004155 9.2e-08 59.7 33 69.7
Ciclev10003676m.g Citrus clementina HOM05D003475 ORTHO05D004155 1.2e-07 59.3 40 57.5
Gohir.D06G014300 Gossypium hirsutum HOM05D003475 ORTHO05D004155 1.2e-07 59.3 40 60.0
Gorai.010G016900 Gossypium raimondii HOM05D003475 ORTHO05D004155 1.2e-07 59.3 40 60.0
QL02p006064 Quercus lobata HOM05D003475 ORTHO05D004155 1.2e-07 59.3 35 62.9
SalBow7G2818 Salvia bowleyana HOM05D003475 ORTHO05D004155 1.2e-07 59.3 40 57.5
TAR381G1600 Trochodendron aralioides HOM05D003475 ORTHO05D004155 1.2e-07 59.3 40 55.0
VMungo0540G2323 Vigna mungo HOM05D003475 ORTHO05D004155 1.2e-07 59.3 32 71.9
arahy.Tifrunner.gnm1.ann1.VT20D2 Arachis hypogaea HOM05D003475 ORTHO05D004155 1.6e-07 58.9 33 69.7
arahy.Tifrunner.gnm1.ann1.W6GX7N Arachis hypogaea HOM05D003475 ORTHO05D004155 1.6e-07 58.9 33 69.7
CSS0007643 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 1.6e-07 58.9 40 57.5
MELO3C016729.2 Cucumis melo HOM05D003475 ORTHO05D004155 1.6e-07 58.9 46 52.2
FAN20G0705 Fragaria x ananassa HOM05D003475 ORTHO05D004155 1.6e-07 58.9 33 63.6
PGR083G1228 Punica granatum HOM05D003475 ORTHO05D004155 1.6e-07 58.9 33 69.7
RcHm_v2.0_Chr6g0307051 Rosa chinensis HOM05D003475 ORTHO05D004155 1.6e-07 58.9 35 62.9
Solyc10g050840.3 Solanum lycopersicum HOM05D003475 ORTHO05D004155 1.6e-07 58.9 38 60.5
Sopen10g022400 Solanum pennellii HOM05D003475 ORTHO05D004155 1.6e-07 58.9 38 60.5
PGSC0003DMG400008244 Solanum tuberosum HOM05D003475 ORTHO05D004155 1.6e-07 58.9 38 60.5
ATR0097G003 Amborella trichopoda HOM05D003475 ORTHO05D004155 2.1e-07 58.5 40 57.5
EL10Ac1g01808 Beta vulgaris HOM05D003475 ORTHO05D004155 2.1e-07 58.5 35 62.9
CAN.G57.17 Capsicum annuum HOM05D003475 ORTHO05D004155 2.1e-07 58.5 33 66.7
CsaV3_4G034070 Cucumis sativus L. HOM05D003475 ORTHO05D004155 2.1e-07 58.5 40 57.5
Eucgr.F00028 Eucalyptus grandis HOM05D003475 ORTHO05D004155 2.1e-07 58.5 40 55.0
Eucgr.L02208 Eucalyptus grandis HOM05D003475 ORTHO05D004155 2.1e-07 58.5 35 62.9
FvH4_2g34941 Fragaria vesca HOM05D003475 ORTHO05D004155 2.1e-07 58.5 33 66.7
FAN20G3001 Fragaria x ananassa HOM05D003475 ORTHO05D004155 2.1e-07 58.5 33 66.7
FAN27G2115 Fragaria x ananassa HOM05D003475 ORTHO05D004155 2.1e-07 58.5 33 66.7
Hma1.2p1_1543F.1_g289760 Hydrangea macrophylla HOM05D003475 ORTHO05D004155 2.1e-07 58.5 40 60.0
Nitab4.5_0003438g0010 Nicotiana tabacum HOM05D003475 ORTHO05D004155 2.1e-07 58.5 33 66.7
Phvul.006G042700 Phaseolus vulgaris HOM05D003475 ORTHO05D004155 2.1e-07 58.5 38 63.2
Solyc04g049630.3 Solanum lycopersicum HOM05D003475 ORTHO05D004155 2.1e-07 58.5 33 66.7
Sopen04g019770 Solanum pennellii HOM05D003475 ORTHO05D004155 2.1e-07 58.5 33 66.7
AUR62022463 Chenopodium quinoa HOM05D003475 ORTHO05D004155 2.7e-07 58.2 37 59.5
Cc10_g03900 Coffea canephora HOM05D003475 ORTHO05D004155 2.7e-07 58.2 35 62.9
Haze_17571 Corylus avellana HOM05D003475 ORTHO05D004155 2.7e-07 58.2 40 57.5
Gohir.A06G016100 Gossypium hirsutum HOM05D003475 ORTHO05D004155 2.7e-07 58.2 40 57.5
HanXRQChr11g0349621 Helianthus annuus HOM05D003475 ORTHO05D004155 2.7e-07 58.2 40 55.0
ECA248G1217 Erigeron canadensis HOM05D003475 ORTHO05D004155 3.5e-07 57.8 35 62.9
Zm00001eb373080 Zea mays HOM05D003475 ORTHO05D004155 3.5e-07 57.8 38 57.9
Aqoxy6G01420 Aquilegia oxysepala HOM05D003475 ORTHO05D004155 4.6e-07 57.4 40 55.0
Lsat_1_v5_gn_6_33061 Lactuca sativa HOM05D003475 ORTHO05D004155 4.6e-07 57.4 33 66.7
Sed0014453 Sechium edule HOM05D003475 ORTHO05D004155 4.6e-07 57.4 40 57.5
Sc02g0006850 Simmondsia chinensis HOM05D003475 ORTHO05D004155 4.6e-07 57.4 36 63.9
VMungo0540G0248 Vigna mungo HOM05D003475 ORTHO05D004155 4.6e-07 57.4 38 60.5
MSTRG.25109 Avicennia marina HOM05D003475 ORTHO05D004155 6.0e-07 57.0 35 60.0
Os06g0215400 Oryza sativa ssp. japonica HOM05D003475 ORTHO05D004155 6.0e-07 57.0 38 57.9
Glyma.18G098400 Glycine max HOM05D003475 ORTHO05D004155 1.0e-06 56.2 40 57.5
Nn5g30184 Nelumbo nucifera HOM05D003475 ORTHO05D004155 1.0e-06 56.2 40 55.0
Aqoxy6G01419 Aquilegia oxysepala HOM05D003475 ORTHO05D004155 1.3e-06 55.8 40 52.5
CDE06G0513 Ceratophyllum demersum HOM05D003475 ORTHO05D004155 1.3e-06 55.8 40 55.0
Os06g0215300 Oryza sativa ssp. japonica HOM05D003475 ORTHO05D004155 1.3e-06 55.8 38 55.3
Sc08g0000080 Simmondsia chinensis HOM05D003475 ORTHO05D004155 1.3e-06 55.8 33 66.7
Hund26615 Selenicereus undatus HOM05D003475 ORTHO05D004155 1.7e-06 55.5 36 58.3
Ah.11g043410 Amaranthus hybridus HOM05D003475 ORTHO05D004155 2.3e-06 55.1 33 60.6
FAN15G1851 Fragaria x ananassa HOM05D003475 ORTHO05D004155 3.0e-06 54.7 33 63.6
SEGI_19056 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 3.0e-06 54.7 40 52.5
ECA233G1971 Erigeron canadensis HOM05D003475 ORTHO05D004155 3.9e-06 54.3 35 57.1
HanXRQChr13g0399111 Helianthus annuus HOM05D003475 ORTHO05D004155 3.9e-06 54.3 35 57.1
SEGI_11952 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 3.9e-06 54.3 40 47.5
Zm00001eb373040 Zea mays HOM05D003475 ORTHO05D004155 8.6e-06 53.1 46 47.8


User provided reference genes

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