Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 4.6e-55 217.6 108 100.0
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 7.9e-47 190.3 108 85.2
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 6.7e-46 187.2 108 82.4
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 8.7e-46 186.8 108 83.3
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 3.7e-44 181.4 108 81.5
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 6.2e-44 180.6 108 81.5
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 8.2e-44 180.3 108 76.9
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 5.3e-43 177.6 108 76.9
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 9.0e-43 176.8 108 76.9
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 1.5e-42 176.0 108 75.9
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 4.5e-42 174.5 108 76.9
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 5.8e-42 174.1 109 79.8
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 5.8e-42 174.1 109 76.1
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 7.6e-42 173.7 108 75.9
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 1.0e-41 173.3 108 75.9
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 2.2e-41 172.2 108 75.9
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 2.9e-41 171.8 108 76.9
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 2.9e-41 171.8 108 74.1
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 2.9e-41 171.8 105 80.0
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 3.8e-41 171.4 108 75.9
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 4.9e-41 171.0 108 75.0
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 6.5e-41 170.6 108 78.7
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 8.4e-41 170.2 108 75.9
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 1.4e-40 169.5 108 75.0
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 1.4e-40 169.5 108 75.9
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 3.2e-40 168.3 108 73.1
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 3.2e-40 168.3 108 75.0
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 9.3e-40 166.8 109 76.1
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 9.3e-40 166.8 108 75.0
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 1.2e-39 166.4 109 75.2
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.6e-39 166.0 108 71.3
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 1.6e-39 166.0 108 75.9
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 2.7e-39 165.2 108 72.2
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 4.6e-39 164.5 108 73.1
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 6.0e-39 164.1 108 75.0
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 7.9e-39 163.7 108 72.2
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.0e-38 163.3 109 72.5
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.3e-38 162.9 108 71.3
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.3e-38 162.9 108 71.3
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 1.8e-38 162.5 108 73.1
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 1.8e-38 162.5 108 73.1
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 2.3e-38 162.2 108 73.1
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 5.1e-38 161.0 107 70.1
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 5.1e-38 161.0 109 76.1
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 5.1e-38 161.0 108 72.2
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 6.7e-38 160.6 109 70.6
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 1.9e-37 159.1 108 70.4
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.9e-37 159.1 108 68.5
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.9e-37 159.1 109 71.6
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 2.5e-37 158.7 108 73.1
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 4.3e-37 157.9 108 66.7
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 4.3e-37 157.9 108 68.5
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 4.3e-37 157.9 108 69.4
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 7.4e-37 157.1 108 70.4
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 9.7e-37 156.8 108 67.6
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.3e-36 156.4 108 67.6
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 1.3e-36 156.4 107 69.2
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 67.6
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 70.4
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 2.2e-36 155.6 108 67.6
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.2e-36 155.6 108 69.4
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 2.8e-36 155.2 108 64.8
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 3.7e-36 154.8 108 72.2
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 8.2e-36 153.7 108 71.3
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 8.2e-36 153.7 108 69.4
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 8.2e-36 153.7 108 69.4
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 8.2e-36 153.7 108 69.4
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 1.1e-35 153.3 108 71.3
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 1.8e-35 152.5 108 64.8
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 2.4e-35 152.1 108 67.6
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 3.1e-35 151.8 108 66.7
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 3.1e-35 151.8 108 67.6
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 3.1e-35 151.8 108 65.7
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 4.1e-35 151.4 108 64.8
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 4.1e-35 151.4 107 67.3
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 4.1e-35 151.4 108 63.9
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 5.3e-35 151.0 108 64.8
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 5.3e-35 151.0 108 64.8
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 5.3e-35 151.0 108 66.7
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 6.9e-35 150.6 108 63.9
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 6.9e-35 150.6 104 71.2
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 9.0e-35 150.2 108 67.6
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 63.9
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 70.4
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 68.5
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 5.9e-34 147.5 108 62.0
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 1.0e-33 146.7 108 63.0
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 1.0e-33 146.7 108 63.0
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 1.3e-33 146.4 108 64.8
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 1.7e-33 146.0 108 65.7
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.7e-33 146.0 85 84.7
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 2.2e-33 145.6 108 63.9
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 2.2e-33 145.6 108 66.7
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 2.9e-33 145.2 111 63.1
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 3.8e-33 144.8 108 66.7
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 5.0e-33 144.4 85 83.5
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 6.5e-33 144.1 108 64.8
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 6.5e-33 144.1 108 64.8
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 8.5e-33 143.7 108 62.0
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 1.1e-32 143.3 91 74.7
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 1.9e-32 142.5 109 58.7
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 64.8
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 1.9e-32 142.5 86 80.2
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.5e-32 142.1 108 62.0
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 3.2e-32 141.7 108 63.0
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 4.2e-32 141.4 108 65.7
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 4.2e-32 141.4 108 65.7
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 9.3e-32 140.2 108 62.0
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 9.3e-32 140.2 86 80.2
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 2.1e-31 139.0 108 62.0
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 3.6e-31 138.3 108 62.0
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 3.6e-31 138.3 108 61.1
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 7.9e-31 137.1 100 70.0
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 7.9e-31 137.1 88 75.0
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 7.9e-31 137.1 108 61.1
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 2.3e-30 135.6 108 60.2
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 55.6
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 5.1e-30 134.4 100 65.0
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 1.1e-29 133.3 88 70.5
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.5e-29 132.9 86 75.6
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.5e-29 132.9 89 74.2
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 1.5e-29 132.9 108 60.2
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 2.5e-29 132.1 108 64.8
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 4.3e-29 131.3 96 64.6
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 9.7e-29 130.2 92 69.6
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 2.2e-28 129.0 108 58.3
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 6.3e-28 127.5 86 69.8
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 8.2e-28 127.1 86 73.3
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.4e-27 126.3 87 71.3
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 2.4e-27 125.6 108 57.4
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.5e-26 122.9 87 69.0
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 4.5e-26 121.3 108 52.8
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 5.9e-26 120.9 87 64.4
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 1.3e-25 119.8 86 66.3
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 1.3e-25 119.8 86 66.3
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 2.2e-25 119.0 86 66.3
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 2.9e-25 118.6 87 64.4
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 2.5e-24 115.5 88 63.6
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 4.2e-24 114.8 90 65.6
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 5.5e-24 114.4 86 64.0
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 7.2e-24 114.0 72 70.8
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 9.4e-24 113.6 108 49.1
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 2.3e-22 109.0 66 81.8
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 4.4e-21 104.8 86 65.1
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 5.7e-21 104.4 106 46.2
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 3.7e-20 101.7 109 47.7
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 3.7e-20 101.7 110 48.2
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 1.1e-19 100.1 87 57.5
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 6.9e-19 97.4 108 44.4
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 1.5e-18 96.3 58 75.9
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.7e-17 92.8 86 51.2
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 2.2e-17 92.4 74 64.9
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 2.1e-15 85.9 86 58.1
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 1.3e-12 76.6 112 42.0
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 2.8e-12 75.5 80 47.5
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 7.0e-11 70.9 109 37.6
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 3.5e-10 68.6 111 36.0
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 2.2e-09 65.9 41 73.2
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 1.6e-07 59.7 69 43.5
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 1.6e-07 59.7 69 43.5


User provided reference genes

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