Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 4.7e-77 291.6 202 100.0
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 8.3e-50 201.1 199 79.9
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 1.9e-49 199.9 198 77.8
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 4.1e-49 198.7 199 77.9
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 1.6e-48 196.8 200 76.5
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 2.1e-48 196.4 199 74.9
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 3.5e-48 195.7 201 76.6
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 7.8e-48 194.5 207 71.5
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 7.8e-48 194.5 207 71.5
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 1.7e-47 193.4 200 79.5
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.7e-47 193.4 202 73.8
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 3.9e-47 192.2 200 75.5
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 5.1e-47 191.8 200 77.0
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 1.1e-46 190.7 198 77.8
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 1.5e-46 190.3 197 77.2
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 1.2e-45 187.2 199 77.9
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 3.6e-45 185.7 203 69.5
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 4.7e-45 185.3 200 64.5
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 6.2e-45 184.9 225 69.8
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 8.1e-45 184.5 203 69.0
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 2.4e-44 183.0 198 73.7
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 3.1e-44 182.6 198 69.2
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 4.0e-44 182.2 200 66.5
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 4.0e-44 182.2 200 75.0
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 5.2e-44 181.8 199 77.9
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.2e-44 181.8 199 77.9
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 5.2e-44 181.8 201 75.1
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 8.9e-44 181.0 199 77.9
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 8.9e-44 181.0 199 77.9
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-43 180.6 199 77.4
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 1.2e-43 180.6 207 72.5
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 2.0e-43 179.9 203 71.9
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 2.6e-43 179.5 199 73.9
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 3.4e-43 179.1 198 67.7
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 4.4e-43 178.7 202 75.2
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 4.4e-43 178.7 202 75.2
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 5.8e-43 178.3 197 72.1
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 5.8e-43 178.3 197 72.1
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 5.8e-43 178.3 199 77.4
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 7.6e-43 177.9 199 77.4
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 9.9e-43 177.6 201 74.1
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.3e-42 177.2 201 73.1
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 2.2e-42 176.4 199 74.9
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 3.8e-42 175.6 196 74.0
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 3.8e-42 175.6 200 71.5
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 6.4e-42 174.9 201 72.6
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 8.4e-42 174.5 200 70.0
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 8.4e-42 174.5 201 73.6
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 1.4e-41 173.7 198 70.7
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 2.4e-41 172.9 200 70.0
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 9.3e-41 171.0 180 75.6
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 9.3e-41 171.0 198 71.2
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 1.6e-40 170.2 218 67.9
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 1.6e-40 170.2 260 51.5
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 6.0e-40 168.3 200 72.0
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 1.0e-39 167.5 197 70.1
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.0e-39 167.5 192 74.0
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 1.0e-39 167.5 199 72.4
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 1.7e-39 166.8 199 70.9
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 3.0e-39 166.0 200 69.5
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 6.6e-39 164.9 193 74.1
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 8.7e-39 164.5 216 66.7
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 1.9e-38 163.3 196 69.9
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 7.3e-38 161.4 203 68.0
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 1.3e-37 160.6 139 76.3
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 1.6e-37 160.2 201 68.2
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 1.6e-37 160.2 186 74.7
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 1.6e-37 160.2 199 55.3
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 1.6e-37 160.2 197 70.6
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 3.6e-37 159.1 200 63.0
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 3.6e-37 159.1 190 72.1
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 4.8e-37 158.7 199 48.2
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 6.2e-37 158.3 199 48.2
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 6.2e-37 158.3 182 75.8
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 6.2e-37 158.3 199 69.8
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 1.1e-36 157.5 196 74.0
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 1.8e-36 156.8 201 47.8
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 1.8e-36 156.8 201 47.8
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 1.8e-36 156.8 199 70.4
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.8e-36 156.8 190 72.1
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 2.4e-36 156.4 200 69.5
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 3.1e-36 156.0 198 62.6
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 5.3e-36 155.2 205 66.3
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 1.5e-35 153.7 199 61.8
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 1.5e-35 153.7 200 63.0
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 2.0e-35 153.3 198 64.1
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 3.4e-35 152.5 195 62.6
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 3.4e-35 152.5 196 70.9
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 7.6e-35 151.4 209 67.9
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 1.3e-34 150.6 199 67.8
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 1.3e-34 150.6 198 70.2
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 2.9e-34 149.4 199 66.3
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 6.4e-34 148.3 199 63.8
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.1e-33 147.5 200 66.0
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.1e-33 147.5 200 66.0
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 1.9e-33 146.7 202 54.0
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 2.4e-33 146.4 188 46.3
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 2.4e-33 146.4 200 61.5
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 3.2e-33 146.0 199 67.3
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 3.2e-33 146.0 200 51.0
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 3.2e-33 146.0 199 66.3
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 4.2e-33 145.6 204 63.7
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 9.3e-33 144.4 202 67.8
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 2.7e-32 142.9 202 67.3
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 3.5e-32 142.5 195 67.7
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 4.6e-32 142.1 199 59.8
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 6.0e-32 141.7 196 66.3
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 6.0e-32 141.7 183 69.9
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 7.3e-30 134.8 180 53.3
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 8.1e-29 131.3 198 54.5
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 1.8e-28 130.2 201 53.7
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 3.1e-28 129.4 209 60.3
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 3.4e-27 125.9 139 83.5
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 3.4e-27 125.9 200 52.0
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 2.2e-26 123.2 202 38.6
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 2.4e-25 119.8 195 55.9
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 2.4e-25 119.8 195 55.9
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 2.4e-25 119.8 195 55.9
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 2.4e-25 119.8 195 55.9
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 9.3e-25 117.9 142 63.4
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 1.6e-24 117.1 221 46.6
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 2.1e-24 116.7 202 58.4
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 3.5e-24 115.9 195 57.4
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 3.5e-24 115.9 195 57.4
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 4.3e-22 109.0 202 38.1
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 4.3e-22 109.0 202 38.1
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 4.3e-22 109.0 209 46.4
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 2.8e-21 106.3 202 37.6
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 8.1e-21 104.8 202 37.6
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 3.4e-19 99.4 144 52.1
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 6.5e-18 95.1 195 43.1
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 1.1e-17 94.4 138 66.7
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.9e-17 93.6 153 66.7
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 4.2e-17 92.4 102 50.0
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.1e-16 90.1 136 71.3
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 7.9e-16 88.2 136 48.5
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 3.9e-15 85.9 185 52.4
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 9.6e-14 81.3 182 54.4
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 2.8e-13 79.7 80 78.8
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 4.8e-13 79.0 167 34.1
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 8.2e-13 78.2 76 77.6
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 4.5e-11 72.4 78 48.7
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 7.6e-11 71.6 117 57.3
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 5.0e-10 68.9 115 59.1
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 2.3e-07 60.1 58 56.9
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 3.0e-07 59.7 64 45.3


User provided reference genes

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