Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 3.0e-301 1037.7 515 100.0
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 3.2e-255 884.8 515 83.7
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 6.0e-246 854.0 515 81.4
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 5.7e-244 847.4 515 81.2
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 3.4e-241 838.2 515 80.6
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 5.5e-239 830.9 514 80.0
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 9.4e-239 830.1 514 79.8
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.6e-238 829.3 515 79.6
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 1.4e-237 826.2 512 80.1
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 3.9e-237 824.7 512 79.5
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 3.9e-237 824.7 515 79.8
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 8.8e-237 823.5 512 79.7
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.1e-236 823.2 511 80.6
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 1.9e-236 822.4 515 78.3
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.7e-235 819.3 515 78.1
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 2.2e-235 818.9 514 78.6
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.2e-235 817.0 493 81.1
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 4.1e-234 814.7 514 79.0
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 1.2e-233 813.1 514 78.8
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.0e-233 812.4 514 77.6
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 3.4e-233 811.6 515 77.3
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 7.7e-233 810.4 549 74.0
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.4e-231 806.2 514 78.6
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.9e-231 805.8 515 76.3
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 1.6e-230 802.7 515 76.7
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.4e-229 799.7 515 76.1
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 3.9e-229 798.1 516 76.7
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 2.6e-228 795.4 514 76.3
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 3.3e-228 795.0 512 76.8
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 1.3e-227 793.1 475 82.3
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 3.7e-227 791.6 516 76.7
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 4.8e-227 791.2 515 75.5
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 6.3e-227 790.8 512 75.2
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 1.4e-226 789.6 515 75.1
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 1.8e-226 789.3 512 75.8
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.8e-226 789.3 515 75.1
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 2.4e-226 788.9 514 74.5
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 7.0e-226 787.3 514 74.3
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.5e-225 786.2 483 79.9
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 2.6e-225 785.4 515 73.0
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 1.3e-224 783.1 453 84.3
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 6.5e-224 780.8 512 74.2
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 2.5e-223 778.9 505 76.4
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 5.5e-223 777.7 512 75.4
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 7.2e-223 777.3 512 74.6
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 9.4e-223 776.9 508 74.0
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 1.6e-222 776.2 516 74.8
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 2.1e-222 775.8 515 75.0
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 4.7e-222 774.6 526 72.1
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 6.1e-222 774.2 514 73.7
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 6.1e-222 774.2 512 74.4
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 6.1e-222 774.2 602 66.6
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.4e-221 773.1 505 73.7
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 1.8e-221 772.7 517 73.5
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 3.0e-221 771.9 512 74.8
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.1e-220 770.0 508 75.0
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 2.0e-220 769.2 508 74.8
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 2.6e-220 768.8 515 73.2
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 3.3e-220 768.5 505 74.7
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 4.4e-220 768.1 508 74.6
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 7.4e-220 767.3 515 72.2
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 2.2e-219 765.8 508 74.4
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 4.8e-219 764.6 553 69.4
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 6.3e-219 764.2 509 74.7
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 1.1e-218 763.5 509 74.7
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 1.1e-218 763.5 509 74.7
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 1.4e-218 763.1 553 69.4
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 1.4e-218 763.1 508 74.2
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 1.4e-218 763.1 510 74.3
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.4e-218 763.1 516 73.8
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.8e-218 762.7 515 74.4
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 3.1e-218 761.9 509 74.5
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.6e-217 758.8 514 75.3
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 3.5e-217 758.4 508 74.4
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 4.5e-217 758.1 508 74.4
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 5.9e-217 757.7 509 74.1
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 7.7e-217 757.3 505 74.5
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 7.7e-217 757.3 513 73.9
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.0e-216 756.9 508 74.4
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 1.3e-216 756.5 508 74.4
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.7e-216 756.1 514 75.1
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.2e-216 755.7 515 72.8
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 2.9e-216 755.4 505 74.1
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.0e-216 754.6 505 73.3
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.0e-216 754.6 510 72.7
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 6.5e-216 754.2 505 74.1
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 1.1e-215 753.4 505 73.9
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 2.5e-215 752.3 505 74.5
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 3.2e-215 751.9 515 73.2
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 2.1e-214 749.2 479 77.2
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 2.1e-214 749.2 481 76.9
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 2.7e-214 748.8 511 73.6
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 2.7e-214 748.8 512 71.3
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 4.7e-214 748.0 508 71.3
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 6.7e-213 744.2 515 72.4
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 4.4e-212 741.5 514 70.8
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.7e-211 739.6 495 74.7
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 2.7e-209 732.3 514 71.2
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 3.8e-208 728.4 568 66.9
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 2.3e-205 719.2 466 75.8
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 8.8e-205 717.2 514 72.2
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.2e-204 716.8 514 72.2
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 5.7e-204 714.5 590 63.2
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.7e-203 711.8 540 70.2
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 6.3e-203 711.1 508 68.9
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 3.1e-202 708.8 512 68.6
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 3.1e-202 708.8 504 69.4
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 4.1e-202 708.4 503 68.4
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 2.7e-201 705.7 527 68.9
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 3.5e-201 705.3 471 74.5
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 7.7e-201 704.1 512 70.1
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 4.2e-199 698.4 512 69.3
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 9.5e-199 697.2 505 68.7
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.6e-198 696.4 512 70.1
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.5e-196 689.9 512 67.2
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 4.4e-196 688.3 516 68.6
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 5.7e-196 688.0 455 75.2
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.8e-194 682.9 526 66.7
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 1.8e-194 682.9 514 65.2
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 2.4e-194 682.6 513 66.7
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 2.7e-193 679.1 457 73.7
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 8.9e-181 637.5 513 63.0
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 7.5e-180 634.4 405 76.8
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 9.5e-175 617.5 402 74.4
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 6.4e-171 604.7 494 65.4
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 2.8e-166 589.3 665 51.4
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 6.0e-161 571.6 532 55.6
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 1.6e-158 563.5 542 53.5
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.5e-148 530.4 458 60.0
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 1.4e-146 523.9 422 61.6
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 6.0e-137 491.9 343 70.8
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 3.1e-133 479.6 452 58.4
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 3.7e-126 456.1 274 78.8
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.7e-121 439.9 276 79.7
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.1e-117 427.9 280 75.0
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.8e-94 350.1 245 71.4
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 6.5e-91 339.0 212 75.9
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 9.8e-87 325.1 240 65.0
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 2.5e-82 310.5 209 76.1
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 4.7e-81 306.2 246 63.0
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.2e-73 281.6 511 38.6
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 2.3e-67 260.8 581 32.0
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.4e-61 240.7 395 36.7
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 9.3e-45 185.7 138 68.1
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.7e-44 184.1 190 52.1
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.0e-43 182.2 122 73.0
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 4.8e-41 173.3 110 80.0
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 3.9e-35 153.7 189 42.9
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.1e-33 147.9 251 39.8
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.2e-33 146.4 251 39.4
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.1e-32 145.6 111 63.1
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 5.4e-29 133.3 68 89.7
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.0e-23 114.8 63 87.3
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 7.4e-18 96.3 170 30.0
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 1.3e-17 95.5 73 65.8
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 3.4e-15 87.4 76 60.5
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 4.5e-15 87.0 113 48.7
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 3.9e-11 73.9 242 26.4
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 1.1e-10 72.4 87 46.0
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 6.3e-09 66.6 36 88.9
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 8.2e-09 66.2 139 28.1
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.5e-07 62.0 73 45.2
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.4e-07 60.8 36 75.0
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.9e-07 60.1 109 41.3


User provided reference genes

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