Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 8.8e-102 373.6 190 100.0
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 1.1e-70 270.4 173 76.9
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 1.7e-68 263.1 158 77.2
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 6.4e-68 261.2 161 77.6
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 1.1e-67 260.4 158 77.8
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 1.4e-67 260.0 161 77.6
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 2.4e-67 259.2 161 77.0
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 4.1e-67 258.5 159 78.0
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 9.2e-67 257.3 157 77.7
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 9.2e-67 257.3 157 77.7
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.6e-66 256.5 155 79.4
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 3.5e-66 255.4 158 75.3
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 4.6e-66 255.0 154 79.9
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 6.0e-66 254.6 157 75.8
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 1.3e-65 253.4 158 76.6
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.7e-65 253.1 155 77.4
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.0e-65 252.3 157 75.8
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 3.9e-65 251.9 159 74.8
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 3.9e-65 251.9 158 76.6
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 5.1e-65 251.5 159 73.6
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 6.6e-65 251.1 158 75.3
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 8.6e-65 250.8 154 77.3
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 8.6e-65 250.8 158 74.7
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 1.5e-64 250.0 158 75.3
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 1.5e-64 250.0 154 77.3
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.5e-64 250.0 154 76.6
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.5e-64 250.0 154 76.6
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 1.9e-64 249.6 158 75.3
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.9e-64 249.6 158 75.3
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.9e-64 249.6 158 75.3
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.9e-64 249.6 158 75.3
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.9e-64 249.6 158 75.3
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.9e-64 249.6 158 75.3
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.5e-64 249.2 154 76.6
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.3e-64 248.8 154 76.0
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.3e-64 248.4 153 76.5
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 4.3e-64 248.4 153 76.5
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 4.3e-64 248.4 158 74.1
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 7.3e-64 247.7 159 75.5
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 7.3e-64 247.7 156 74.4
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 7.3e-64 247.7 158 72.8
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 2.8e-63 245.7 159 74.8
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 2.8e-63 245.7 158 73.4
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 3.6e-63 245.4 158 73.4
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.6e-63 245.4 154 75.3
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.6e-63 245.4 156 73.7
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 6.2e-63 244.6 157 74.5
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 1.1e-62 243.8 159 71.7
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.1e-62 243.8 159 74.2
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.8e-62 243.0 158 74.1
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 1.8e-62 243.0 158 74.1
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 2.4e-62 242.7 159 73.0
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 2.4e-62 242.7 158 70.9
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 4.0e-62 241.9 159 71.1
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 5.2e-62 241.5 156 73.1
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 8.9e-62 240.7 158 72.8
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 8.9e-62 240.7 159 71.7
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.2e-61 240.4 159 71.7
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 1.5e-61 240.0 167 69.5
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 2.0e-61 239.6 158 72.2
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 2.0e-61 239.6 158 74.1
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 2.0e-61 239.6 159 72.3
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 7.6e-61 237.7 154 74.0
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 7.6e-61 237.7 159 69.2
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 1.3e-60 236.9 159 72.3
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 2.9e-60 235.7 159 69.2
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 2.9e-60 235.7 156 71.8
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 2.9e-60 235.7 161 70.2
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 3.8e-60 235.3 154 70.8
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 3.8e-60 235.3 158 70.9
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 3.8e-60 235.3 158 70.9
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 4.9e-60 235.0 154 74.0
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 8.4e-60 234.2 154 71.4
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 8.4e-60 234.2 162 69.8
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 8.4e-60 234.2 159 69.2
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 1.1e-59 233.8 154 73.4
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.9e-59 233.0 157 69.4
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 2.4e-59 232.6 163 66.9
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 2.4e-59 232.6 155 70.3
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 3.2e-59 232.3 154 72.7
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 5.4e-59 231.5 155 69.7
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 5.4e-59 231.5 151 73.5
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 5.4e-59 231.5 155 69.7
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 9.3e-59 230.7 155 69.7
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 1.6e-58 229.9 161 66.5
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.6e-58 229.9 158 68.4
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 2.1e-58 229.6 154 71.4
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 2.1e-58 229.6 154 71.4
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 2.7e-58 229.2 154 70.8
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 2.7e-58 229.2 166 66.9
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 3.5e-58 228.8 154 69.5
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 6.0e-58 228.0 155 68.4
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 7.8e-58 227.6 156 68.6
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 7.8e-58 227.6 155 68.4
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.0e-57 227.3 155 67.7
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.3e-57 226.9 156 67.9
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.3e-57 226.9 138 79.0
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 2.3e-57 226.1 154 70.8
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 2.3e-57 226.1 154 68.8
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 2.3e-57 226.1 154 68.8
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 2.3e-57 226.1 154 68.8
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 3.0e-57 225.7 158 67.7
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 6.6e-57 224.6 155 67.7
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 8.7e-57 224.2 155 67.7
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 8.7e-57 224.2 155 67.7
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 8.7e-57 224.2 155 67.7
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 1.5e-56 223.4 155 67.1
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.9e-56 223.0 155 67.1
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 2.5e-56 222.6 207 57.0
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 4.0e-54 215.3 125 81.6
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.2e-53 213.8 154 64.9
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 1.5e-53 213.4 142 70.4
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.0e-53 213.0 143 69.2
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.3e-52 210.3 249 48.2
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.1e-51 207.2 122 80.3
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 1.4e-51 206.8 135 71.9
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 9.3e-51 204.1 144 68.1
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 2.1e-50 203.0 144 65.3
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 3.5e-50 202.2 154 60.4
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.1e-48 197.2 156 62.8
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.3e-48 195.7 157 61.8
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 4.8e-47 191.8 112 78.6
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 3.4e-45 185.7 196 50.5
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 3.4e-45 185.7 207 47.3
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 2.4e-43 179.5 154 54.5
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 2.1e-42 176.4 302 37.1
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 1.9e-40 169.9 109 72.5
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.1e-39 166.4 138 63.0
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 8.7e-33 144.4 95 72.6
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 1.5e-32 143.7 111 65.8
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 2.1e-31 139.8 94 69.1
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.2e-29 134.0 152 46.7
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 3.4e-29 132.5 154 44.8
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.7e-28 130.2 149 43.0
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 5.0e-28 128.6 149 43.0
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 9.3e-27 124.4 157 40.1
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.2e-26 124.0 130 49.2
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 2.5e-24 116.3 77 66.2
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 3.7e-23 112.5 145 48.3
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 1.8e-22 110.2 143 41.3
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.1e-22 109.0 92 58.7
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.1e-22 109.0 92 58.7
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 5.3e-22 108.6 132 43.2
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.6e-21 106.3 65 73.8
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 3.4e-21 105.9 65 72.3
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 8.5e-20 101.3 64 71.9
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 8.5e-20 101.3 65 70.8
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 5.5e-19 98.6 135 41.5
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.2e-18 97.4 64 68.8
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 8.8e-17 91.3 101 52.5
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 1.5e-16 90.5 78 59.0
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 3.9e-09 65.9 65 52.3
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 1.1e-08 64.3 65 50.8
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 4.4e-08 62.4 148 33.8


User provided reference genes

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