Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 1.9e-64 249.2 140 100.0
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 2.7e-23 112.5 159 51.6
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 1.3e-22 110.2 164 52.4
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 1.8e-22 109.8 152 52.0
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 1.3e-20 103.6 145 53.1
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 1.8e-19 99.8 147 49.0
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 1.2e-18 97.1 162 48.8
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 4.5e-18 95.1 147 50.3
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 2.9e-17 92.4 171 43.9
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 3.8e-17 92.0 159 46.5
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 3.8e-17 92.0 153 47.1
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 3.8e-17 92.0 169 46.2
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 3.8e-17 92.0 155 49.7
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 1.1e-16 90.5 166 47.6
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 1.4e-16 90.1 169 45.6
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 1.4e-16 90.1 148 50.7
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 1.9e-16 89.7 145 48.3
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 1.9e-16 89.7 151 47.0
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 2.5e-16 89.4 145 50.3
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.2e-16 89.0 136 51.5
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.2e-16 88.6 157 45.9
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 9.3e-16 87.4 172 48.8
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 9.3e-16 87.4 162 46.3
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 1.6e-15 86.7 130 53.8
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 1.6e-15 86.7 139 48.2
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 1.6e-15 86.7 165 45.5
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 1.6e-15 86.7 165 45.5
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 1.6e-15 86.7 149 46.3
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 2.7e-15 85.9 140 50.0
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.7e-15 85.9 140 50.0
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 2.7e-15 85.9 156 44.9
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 3.5e-15 85.5 158 41.8
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 4.6e-15 85.1 168 46.4
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 1.0e-14 84.0 162 42.6
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 1.0e-14 84.0 164 43.9
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.3e-14 83.6 157 43.3
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 1.3e-14 83.6 139 47.5
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.8e-14 83.2 157 43.9
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 2.3e-14 82.8 127 52.0
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 3.0e-14 82.4 154 44.2
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 3.0e-14 82.4 112 50.9
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 3.0e-14 82.4 152 45.4
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 3.9e-14 82.0 162 42.6
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 3.9e-14 82.0 162 42.6
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 5.1e-14 81.6 156 43.6
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 5.1e-14 81.6 167 41.9
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 5.1e-14 81.6 142 45.8
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 5.1e-14 81.6 88 56.8
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 5.1e-14 81.6 157 42.0
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 5.1e-14 81.6 171 43.3
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 6.7e-14 81.3 142 44.4
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 8.7e-14 80.9 105 52.4
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 1.5e-13 80.1 167 41.3
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 1.5e-13 80.1 88 56.8
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 1.5e-13 80.1 82 59.8
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 1.5e-13 80.1 142 45.1
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 1.9e-13 79.7 145 47.6
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 2.5e-13 79.3 181 40.9
vmacro07911 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 2.5e-13 79.3 130 50.0
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 3.3e-13 79.0 96 61.5
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 4.3e-13 78.6 160 43.1
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 4.3e-13 78.6 160 43.1
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 7.4e-13 77.8 95 56.8
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 9.6e-13 77.4 160 40.6
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 9.6e-13 77.4 143 44.8
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 9.6e-13 77.4 170 42.9
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 9.6e-13 77.4 149 42.3
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 1.3e-12 77.0 162 41.4
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 1.3e-12 77.0 162 41.4
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 1.3e-12 77.0 155 45.8
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 1.6e-12 76.6 163 41.1
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 1.6e-12 76.6 115 47.0
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 2.1e-12 76.3 152 44.1
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 2.1e-12 76.3 143 47.6
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 2.1e-12 76.3 83 59.0
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 2.8e-12 75.9 158 42.4
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 2.8e-12 75.9 181 42.5
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 2.8e-12 75.9 94 56.4
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 3.7e-12 75.5 162 40.7
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 4.8e-12 75.1 160 43.1
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 4.8e-12 75.1 148 45.3
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 8.2e-12 74.3 160 40.0
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 1.1e-11 73.9 105 51.4
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 1.4e-11 73.6 105 47.6
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 1.4e-11 73.6 137 46.0
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.4e-11 73.6 95 53.7
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 1.8e-11 73.2 161 41.6
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 1.8e-11 73.2 161 41.6
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 2.4e-11 72.8 141 43.3
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 3.1e-11 72.4 116 47.4
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 4.1e-11 72.0 83 53.0
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 5.3e-11 71.6 149 44.3
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 5.3e-11 71.6 160 41.9
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 6.9e-11 71.2 100 51.0
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 9.0e-11 70.9 198 38.4
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 9.0e-11 70.9 102 52.0
Ah.13g075890 Amaranthus hybridus HOM05D003436 ORTHO05D003674 1.2e-10 70.5 79 53.2
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 1.5e-10 70.1 140 42.9
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 1.5e-10 70.1 146 43.8
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 2.0e-10 69.7 160 41.9
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 2.6e-10 69.3 149 44.3
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 3.4e-10 68.9 172 37.8
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 3.4e-10 68.9 83 54.2
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 3.4e-10 68.9 83 54.2
Rhsim03G0006300 Rhododendron simsii HOM05D003436 ORTHO05D003674 5.9e-10 68.2 136 43.4
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 5.9e-10 68.2 113 46.0
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 7.6e-10 67.8 71 59.2
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 7.6e-10 67.8 100 50.0
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 1.0e-09 67.4 140 42.1
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 1.0e-09 67.4 175 37.7
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 1.0e-09 67.4 112 45.5
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 1.0e-09 67.4 72 56.9
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 1.3e-09 67.0 73 56.2
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 1.3e-09 67.0 76 56.6
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 1.3e-09 67.0 168 42.9
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.7e-09 66.6 117 41.9
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 1.7e-09 66.6 84 53.6
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 3.8e-09 65.5 76 55.3
Sc19g0007030 Simmondsia chinensis HOM05D003436 ORTHO05D003674 3.8e-09 65.5 88 50.0
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 5.0e-09 65.1 68 52.9
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 8.5e-09 64.3 170 38.2
PSO017G1578 Papaver somniferum HOM05D003436 ORTHO05D003674 8.5e-09 64.3 55 67.3
vmacro07912 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 8.5e-09 64.3 133 46.6
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 1.1e-08 63.9 170 35.3
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 1.4e-08 63.5 95 49.5
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 1.9e-08 63.2 148 41.2
Aqoxy2G03681 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 2.5e-08 62.8 60 60.0
Aqoxy7G02037 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 2.5e-08 62.8 60 60.0
DCAR_019788 Daucus carota HOM05D003436 ORTHO05D003674 3.2e-08 62.4 74 55.4
Nitab4.5_0001538g0010 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.2e-08 62.4 84 53.6
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 5.5e-08 61.6 132 44.7
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 5.5e-08 61.6 77 53.2
Cc06_g15970 Coffea canephora HOM05D003436 ORTHO05D003674 7.2e-08 61.2 156 42.9
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 7.2e-08 61.2 88 50.0
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 7.2e-08 61.2 134 45.5
PSO170G2585 Papaver somniferum HOM05D003436 ORTHO05D003674 7.2e-08 61.2 50 70.0
Sed0013894 Sechium edule HOM05D003436 ORTHO05D003674 9.3e-08 60.8 71 59.2
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 9.3e-08 60.8 80 47.5
arahy.Tifrunner.gnm1.ann1.6M6V4C Arachis hypogaea HOM05D003436 ORTHO05D003674 1.2e-07 60.5 164 41.5
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.2e-07 60.5 75 56.0
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 1.6e-07 60.1 120 43.3
Nitab4.5_0000105g0080 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.7e-07 59.3 75 56.0
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 3.6e-07 58.9 112 43.8
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 4.6e-07 58.5 94 46.8
Aqoxy3G02738 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 6.1e-07 58.2 51 60.8
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 6.1e-07 58.2 147 40.1
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 1.0e-06 57.4 159 39.0
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 2.3e-06 56.2 78 50.0
Zm00001eb414650 Zea mays HOM05D003436 ORTHO05D003674 2.3e-06 56.2 152 36.2
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 3.0e-06 55.8 90 46.7
HanXRQChr10g0300671 Helianthus annuus HOM05D003436 ORTHO05D003674 5.1e-06 55.1 78 50.0
Lsat_1_v5_gn_9_26540 Lactuca sativa HOM05D003436 ORTHO05D003674 6.7e-06 54.7 84 50.0


User provided reference genes

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