Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01033476001 Vitis vinifera HOM05D003641 ORTHO05D004915 3.2e-144 515.0 247 100.0
TWI74G1529 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 3.0e-110 402.1 347 60.2
TWI53G2154 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 1.7e-108 396.4 348 59.5
MD14G1054700 Malus domestica HOM05D003641 ORTHO05D004915 1.8e-107 392.9 350 58.0
Manes.09G037400 Manihot esculenta HOM05D003641 ORTHO05D004915 3.1e-107 392.1 349 58.5
Manes.08G042800 Manihot esculenta HOM05D003641 ORTHO05D004915 9.1e-107 390.6 349 58.5
MD12G1055300 Malus domestica HOM05D003641 ORTHO05D004915 1.2e-106 390.2 351 57.8
TAR633G0428 Trochodendron aralioides HOM05D003641 ORTHO05D004915 1.2e-106 390.2 344 58.1
CiPaw.09G029000 Carya illinoinensis HOM05D003641 ORTHO05D004915 2.0e-106 389.4 352 56.8
Lj2A365T90 Lonicera japonica HOM05D003641 ORTHO05D004915 3.5e-106 388.7 350 59.1
vmacro07894 Vaccinium macrocarpon HOM05D003641 ORTHO05D004915 3.5e-106 388.7 351 58.1
Sc13g0002360 Simmondsia chinensis HOM05D003641 ORTHO05D004915 5.9e-106 387.9 349 57.3
BcaC05g29294 Brassica carinata HOM05D003641 ORTHO05D004915 7.7e-106 387.5 320 60.6
Haze_20012 Corylus avellana HOM05D003641 ORTHO05D004915 1.3e-105 386.7 350 56.9
Duzib093G1627 Durio zibethinus HOM05D003641 ORTHO05D004915 2.2e-105 386.0 353 56.9
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 3.8e-105 385.2 349 57.0
CSS0018208 Camellia sinensis var. sinensis HOM05D003641 ORTHO05D004915 5.0e-105 384.8 349 57.3
Cfa020150 Carpinus fangiana HOM05D003641 ORTHO05D004915 6.5e-105 384.4 350 56.6
CsaV3_3G038670 Cucumis sativus L. HOM05D003641 ORTHO05D004915 6.5e-105 384.4 353 56.4
TAR636G0728 Trochodendron aralioides HOM05D003641 ORTHO05D004915 6.5e-105 384.4 347 56.5
Ciclev10012043m.g Citrus clementina HOM05D003641 ORTHO05D004915 8.5e-105 384.0 361 56.0
MBI19_g17419_MAGBIO Magnolia biondii HOM05D003641 ORTHO05D004915 8.5e-105 384.0 348 56.0
Hma1.2p1_0676F.1_g201930 Hydrangea macrophylla HOM05D003641 ORTHO05D004915 1.1e-104 383.6 349 57.3
Rhsim03G0004900 Rhododendron simsii HOM05D003641 ORTHO05D004915 1.1e-104 383.6 352 57.4
CANSAT64G0207 Cannabis sativa HOM05D003641 ORTHO05D004915 1.5e-104 383.3 359 56.3
COL.COLO4_29349 Corchorus olitorius HOM05D003641 ORTHO05D004915 1.5e-104 383.3 352 56.2
Eucgr.A02465 Eucalyptus grandis HOM05D003641 ORTHO05D004915 1.5e-104 383.3 360 56.1
Aqoxy1G00140 Aquilegia oxysepala HOM05D003641 ORTHO05D004915 1.9e-104 382.9 356 55.6
FvH4_6g21990 Fragaria vesca HOM05D003641 ORTHO05D004915 1.9e-104 382.9 350 56.9
FAN14G0097 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.9e-104 382.9 350 56.9
Atru.chr8.1148 Acer truncatum HOM05D003641 ORTHO05D004915 2.5e-104 382.5 355 56.6
Lsat_1_v5_gn_5_164500 Lactuca sativa HOM05D003641 ORTHO05D004915 2.5e-104 382.5 344 57.6
QL07p024293 Quercus lobata HOM05D003641 ORTHO05D004915 3.2e-104 382.1 365 55.1
Sabra06G0149100 Salix brachista HOM05D003641 ORTHO05D004915 3.2e-104 382.1 347 57.9
Prupe.7G080100 Prunus persica HOM05D003641 ORTHO05D004915 4.2e-104 381.7 356 55.9
FAN02G1826 Fragaria x ananassa HOM05D003641 ORTHO05D004915 5.5e-104 381.3 346 57.5
Peaxi162Scf00258g00921 Petunia axillaris HOM05D003641 ORTHO05D004915 5.5e-104 381.3 353 56.9
Duzib128G0491 Durio zibethinus HOM05D003641 ORTHO05D004915 9.4e-104 380.6 353 56.1
MELO3C009611.2 Cucumis melo HOM05D003641 ORTHO05D004915 1.2e-103 380.2 353 55.8
FAN05G2657 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.2e-103 380.2 351 56.4
DCAR_017036 Daucus carota HOM05D003641 ORTHO05D004915 2.1e-103 379.4 351 56.1
FAN09G3507 Fragaria x ananassa HOM05D003641 ORTHO05D004915 2.7e-103 379.0 351 56.7
Gohir.A04G051900 Gossypium hirsutum HOM05D003641 ORTHO05D004915 2.7e-103 379.0 355 54.1
Gorai.012G099600 Gossypium raimondii HOM05D003641 ORTHO05D004915 3.6e-103 378.6 355 54.6
HanXRQChr01g0010591 Helianthus annuus HOM05D003641 ORTHO05D004915 3.6e-103 378.6 352 56.0
Potri.006G194400 Populus trichocarpa HOM05D003641 ORTHO05D004915 3.6e-103 378.6 347 57.3
PGR004G2452 Punica granatum HOM05D003641 ORTHO05D004915 3.6e-103 378.6 356 55.1
Dinv24057 Davidia involucrata HOM05D003641 ORTHO05D004915 4.7e-103 378.3 355 54.9
C05p55760 Brassica napus HOM05D003641 ORTHO05D004915 6.1e-103 377.9 350 55.4
Lju124A24T32 Lonicera japonica HOM05D003641 ORTHO05D004915 6.1e-103 377.9 343 56.3
Sabra16G0062900 Salix brachista HOM05D003641 ORTHO05D004915 8.0e-103 377.5 348 56.9
CAN.G960.10 Capsicum annuum HOM05D003641 ORTHO05D004915 1.0e-102 377.1 355 54.6
Gohir.D04G089500 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.0e-102 377.1 355 54.4
Thecc.05G174300 Theobroma cacao HOM05D003641 ORTHO05D004915 1.0e-102 377.1 353 55.8
RcHm_v2.0_Chr3g0479291 Rosa chinensis HOM05D003641 ORTHO05D004915 1.8e-102 376.3 353 55.8
ClCG10G017650 Citrullus lanatus HOM05D003641 ORTHO05D004915 2.3e-102 375.9 352 55.4
CiPaw.10G025600 Carya illinoinensis HOM05D003641 ORTHO05D004915 3.0e-102 375.6 351 54.7
THA.LOC104826776 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 3.9e-102 375.2 355 54.1
Nitab4.5_0007274g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 5.2e-102 374.8 350 55.7
BraA05t22525Z Brassica rapa HOM05D003641 ORTHO05D004915 6.7e-102 374.4 351 55.6
PGSC0003DMG400011447 Solanum tuberosum HOM05D003641 ORTHO05D004915 8.8e-102 374.0 352 54.5
Hund24813 Selenicereus undatus HOM05D003641 ORTHO05D004915 1.1e-101 373.6 351 55.8
A05p37290 Brassica napus HOM05D003641 ORTHO05D004915 1.5e-101 373.2 351 55.0
ATR0598G178 Amborella trichopoda HOM05D003641 ORTHO05D004915 2.6e-101 372.5 350 54.3
AUR62011998 Chenopodium quinoa HOM05D003641 ORTHO05D004915 2.6e-101 372.5 354 54.2
AUR62015343 Chenopodium quinoa HOM05D003641 ORTHO05D004915 2.6e-101 372.5 326 58.6
SalBow6G5303 Salvia bowleyana HOM05D003641 ORTHO05D004915 3.3e-101 372.1 353 55.5
SGA_v2.0_scaffold105G30499 Striga asiatica HOM05D003641 ORTHO05D004915 3.3e-101 372.1 356 55.3
Aa31sc80G90 Aethionema arabicum HOM05D003641 ORTHO05D004915 9.7e-101 370.5 360 53.6
Ca_08533_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 9.7e-101 370.5 361 54.3
VMungo1383G0826 Vigna mungo HOM05D003641 ORTHO05D004915 9.7e-101 370.5 356 55.1
CDE05G2508 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 1.3e-100 370.2 346 54.3
Sopen10g029550 Solanum pennellii HOM05D003641 ORTHO05D004915 1.3e-100 370.2 352 54.0
Psat3g067000 Pisum sativum HOM05D003641 ORTHO05D004915 1.7e-100 369.8 355 54.1
Potri.016G060100 Populus trichocarpa HOM05D003641 ORTHO05D004915 2.8e-100 369.0 355 54.9
BcaB06g25550 Brassica carinata HOM05D003641 ORTHO05D004915 3.7e-100 368.6 349 53.9
Phvul.001G143800 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 6.3e-100 367.9 363 53.7
TPR.G30301 Trifolium pratense HOM05D003641 ORTHO05D004915 8.2e-100 367.5 352 55.1
Thhalv10021006m.g Eutrema salsugineum HOM05D003641 ORTHO05D004915 1.4e-99 366.7 360 53.1
Solyc10g078930.2 Solanum lycopersicum HOM05D003641 ORTHO05D004915 2.4e-99 365.9 352 53.4
AL3G23660 Arabidopsis lyrata HOM05D003641 ORTHO05D004915 3.1e-99 365.5 363 52.3
Nitab4.5_0002343g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 3.1e-99 365.5 341 56.9
Lj1g0002782 Lotus japonicus HOM05D003641 ORTHO05D004915 4.1e-99 365.2 343 54.5
AT3G12050 Arabidopsis thaliana HOM05D003641 ORTHO05D004915 5.3e-99 364.8 361 51.8
MSTRG.19915 Avicennia marina HOM05D003641 ORTHO05D004915 7.0e-99 364.4 355 54.6
CARHR086620 Cardamine hirsuta HOM05D003641 ORTHO05D004915 1.2e-98 363.6 360 51.4
Glyma.03G146100 Glycine max HOM05D003641 ORTHO05D004915 1.2e-98 363.6 359 53.2
Medtr7g093500 Medicago truncatula HOM05D003641 ORTHO05D004915 1.2e-98 363.6 355 53.5
Cpa.g.sc85.60 Carica papaya HOM05D003641 ORTHO05D004915 1.6e-98 363.2 357 53.2
SGA_v2.0_scaffold69G23056 Striga asiatica HOM05D003641 ORTHO05D004915 1.6e-98 363.2 355 54.9
EL10Ac3g06892 Beta vulgaris HOM05D003641 ORTHO05D004915 2.0e-98 362.8 346 54.3
Ca_12045_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.0e-98 362.8 350 53.4
Oeu063867.1 Olea europaea HOM05D003641 ORTHO05D004915 2.0e-98 362.8 349 54.2
Migut.J01850 Erythranthe guttata HOM05D003641 ORTHO05D004915 3.5e-98 362.1 357 54.3
THA.LOC104809934 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 4.5e-98 361.7 352 53.1
Carub.0003s1139 Capsella rubella HOM05D003641 ORTHO05D004915 7.7e-98 360.9 365 52.6
CDE11G0833 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 1.0e-97 360.5 346 53.2
Sp3g10280 Schrenkiella parvula HOM05D003641 ORTHO05D004915 1.3e-97 360.1 360 52.2
Cc06_g15710 Coffea canephora HOM05D003641 ORTHO05D004915 1.7e-97 359.8 353 53.3
Lj5g0013930 Lotus japonicus HOM05D003641 ORTHO05D004915 1.7e-97 359.8 358 52.5
Sed0007356 Sechium edule HOM05D003641 ORTHO05D004915 2.2e-97 359.4 352 52.0
HPP92_005766 Vanilla planifolia HOM05D003641 ORTHO05D004915 2.9e-97 359.0 364 50.5
Lalb_Chr18g0047991 Lupinus albus HOM05D003641 ORTHO05D004915 3.8e-97 358.6 358 52.2
Zm00001eb037640 Zea mays HOM05D003641 ORTHO05D004915 5.0e-97 358.2 349 51.9
unitig_899.g15167 Utricularia gibba HOM05D003641 ORTHO05D004915 8.5e-97 357.5 349 54.2
BolC5t34243H Brassica oleracea HOM05D003641 ORTHO05D004915 1.1e-96 357.1 393 49.4
PSO135G0566 Papaver somniferum HOM05D003641 ORTHO05D004915 1.9e-96 356.3 357 52.4
Glyma.19G149300 Glycine max HOM05D003641 ORTHO05D004915 3.2e-96 355.5 357 52.7
Medtr0136s0060 Medicago truncatula HOM05D003641 ORTHO05D004915 5.5e-96 354.8 345 53.9
PSO724G0609 Papaver somniferum HOM05D003641 ORTHO05D004915 7.2e-96 354.4 360 51.9
Nitab4.5_0000105g0210 Nicotiana tabacum HOM05D003641 ORTHO05D004915 3.6e-95 352.1 343 55.1
arahy.Tifrunner.gnm1.ann1.G8NWJQ Arachis hypogaea HOM05D003641 ORTHO05D004915 8.0e-95 350.9 360 51.1
Os08g0464000 Oryza sativa ssp. japonica HOM05D003641 ORTHO05D004915 2.3e-94 349.4 357 50.1
arahy.Tifrunner.gnm1.ann1.86C462 Arachis hypogaea HOM05D003641 ORTHO05D004915 3.0e-94 349.0 360 50.6
Zm00001eb177410 Zea mays HOM05D003641 ORTHO05D004915 3.0e-94 349.0 354 50.6
Oeu006209.1 Olea europaea HOM05D003641 ORTHO05D004915 5.2e-94 348.2 364 50.3
Hund19209 Selenicereus undatus HOM05D003641 ORTHO05D004915 6.8e-94 347.8 351 52.7
HPP92_009321 Vanilla planifolia HOM05D003641 ORTHO05D004915 3.4e-93 345.5 361 49.0
Glyma.09G109200 Glycine max HOM05D003641 ORTHO05D004915 4.4e-93 345.1 351 51.6
Phvul.007G261100 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 2.2e-92 342.8 354 50.8
VMungo0720G0815 Vigna mungo HOM05D003641 ORTHO05D004915 1.4e-91 340.1 353 51.0
Glyma.02G171100 Glycine max HOM05D003641 ORTHO05D004915 4.1e-91 338.6 353 50.7
Nitab4.5_0001137g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 2.0e-90 336.3 353 52.1
Ah.04g152830 Amaranthus hybridus HOM05D003641 ORTHO05D004915 2.5e-88 329.3 332 51.8
Pp3c15_21400 Physcomitrium patens HOM05D003641 ORTHO05D004915 9.4e-88 327.4 353 47.9
Mapoly0109s0023 Marchantia polymorpha HOM05D003641 ORTHO05D004915 3.0e-86 322.4 351 47.9
Pp3c9_15400 Physcomitrium patens HOM05D003641 ORTHO05D004915 8.8e-86 320.9 353 47.3
SMO203G0054 Selaginella moellendorffii HOM05D003641 ORTHO05D004915 2.2e-84 316.2 348 46.3
unitig_746.g26803 Utricularia gibba HOM05D003641 ORTHO05D004915 2.4e-83 312.8 334 51.8
AagrBONN_evm.TU.Sc2ySwM_344.3694 Anthoceros agrestis HOM05D003641 ORTHO05D004915 1.0e-81 307.4 348 45.7
Nn7g35972 Nelumbo nucifera HOM05D003641 ORTHO05D004915 3.2e-75 285.8 303 50.8
TPR.G35793 Trifolium pratense HOM05D003641 ORTHO05D004915 2.3e-73 279.6 259 56.0
Gorai.012G099500 Gossypium raimondii HOM05D003641 ORTHO05D004915 1.2e-69 267.3 288 49.7
Actinidia22049 Actinidia chinensis HOM05D003641 ORTHO05D004915 4.4e-69 265.4 328 47.3
Psat6g123080 Pisum sativum HOM05D003641 ORTHO05D004915 4.4e-69 265.4 296 48.6
Actinidia14376 Actinidia chinensis HOM05D003641 ORTHO05D004915 2.9e-68 262.7 142 83.8
Gohir.D04G089400 Gossypium hirsutum HOM05D003641 ORTHO05D004915 8.3e-68 261.2 152 78.9
Nn7g35971 Nelumbo nucifera HOM05D003641 ORTHO05D004915 4.6e-66 255.4 145 80.7
Gohir.A04G052000 Gossypium hirsutum HOM05D003641 ORTHO05D004915 8.6e-57 224.6 133 76.7
Actinidia32404 Actinidia chinensis HOM05D003641 ORTHO05D004915 1.1e-54 217.6 115 85.2
BcaC09g48210 Brassica carinata HOM05D003641 ORTHO05D004915 1.4e-54 217.2 144 72.9
arahy.Tifrunner.gnm1.ann1.VQQW03 Arachis hypogaea HOM05D003641 ORTHO05D004915 4.1e-51 205.7 126 75.4
arahy.Tifrunner.gnm1.ann1.EPN7T6 Arachis hypogaea HOM05D003641 ORTHO05D004915 7.1e-51 204.9 156 60.9
PRCOL_00005901 Prasinoderma coloniale HOM05D003641 ORTHO05D004915 9.2e-51 204.5 353 35.7
SEGI_39925 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 1.5e-45 187.2 260 40.8
MCO07G236 Micromonas commoda HOM05D003641 ORTHO05D004915 1.3e-44 184.1 344 33.1
Gohir.A04G052026 Gossypium hirsutum HOM05D003641 ORTHO05D004915 6.2e-39 165.2 107 72.0
Cre03.g199300 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D004915 1.2e-37 161.0 356 29.5
Ca_31327_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 6.4e-36 155.2 85 78.8
Ca_14569_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 7.1e-35 151.8 85 77.6
Ca_20435_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.6e-34 150.6 85 76.5
Ca_09720_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 8.7e-33 144.8 85 74.1
Glyma.09G095600 Glycine max HOM05D003641 ORTHO05D004915 9.0e-30 134.8 84 72.6
arahy.Tifrunner.gnm1.ann1.20Y790 Arachis hypogaea HOM05D003641 ORTHO05D004915 3.5e-26 122.9 106 57.5
Ca_03268_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.9e-24 117.1 184 39.7
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 3.7e-23 112.8 63 79.4
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 6.2e-23 112.1 59 84.7
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 6.2e-23 112.1 59 84.7
Ca_12039_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.9e-20 103.2 58 81.0
Nn8g39306 Nelumbo nucifera HOM05D003641 ORTHO05D004915 2.1e-18 97.1 60 71.7
HanXRQChr03g0083061 Helianthus annuus HOM05D003641 ORTHO05D004915 4.6e-18 95.9 57 70.2
Ca_20824_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 3.0e-17 93.2 181 34.8
arahy.Tifrunner.gnm1.ann1.XYD4PT Arachis hypogaea HOM05D003641 ORTHO05D038899 5.1e-17 92.4 64 67.2
MCO11G399 Micromonas commoda HOM05D003641 ORTHO05D044219 6.7e-17 92.0 111 41.4
CBR_g18730 Chara braunii HOM05D003641 ORTHO05D004915 8.7e-17 91.7 55 72.7
EL10Ac8g19334 Beta vulgaris HOM05D003641 ORTHO05D027013 2.0e-13 80.5 78 50.0
Cre08.g358539 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D044219 2.6e-13 80.1 114 36.8
BolC1t05367H Brassica oleracea HOM05D003641 ORTHO05D038899 1.0e-12 78.2 58 60.3
SEGI_05882 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 1.3e-12 77.8 53 67.9
Hund07686 Selenicereus undatus HOM05D003641 ORTHO05D011049 3.8e-12 76.3 52 65.4
Hund07687 Selenicereus undatus HOM05D003641 ORTHO05D021213 1.4e-11 74.3 92 46.7
SGA_v2.0_scaffold200G41266 Striga asiatica HOM05D037212 ORTHO05D027013 1.6e-10 70.9 54 59.3
CsaV3_5G015400 Cucumis sativus L. HOM05D003641 ORTHO05D004915 1.1e-08 64.7 50 54.0
arahy.Tifrunner.gnm1.ann1.5I9U23 Arachis hypogaea HOM05D003641 ORTHO05D085625 1.6e-07 60.8 69 47.8
Peaxi162Scf00003g04539 Petunia axillaris HOM05D000312 ORTHO05D000221 5.3e-06 55.8 48 56.2


User provided reference genes

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