Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 1.0e-257 892.9 443 100.0
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 7.1e-195 684.1 409 82.2
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 8.7e-193 677.2 408 80.6
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 2.5e-192 675.6 408 80.4
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 1.6e-191 672.9 408 79.2
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 2.8e-191 672.2 408 78.9
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.1e-190 670.2 408 78.4
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 4.0e-190 668.3 408 80.1
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 5.3e-190 667.9 408 78.2
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 9.0e-190 667.2 411 78.6
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 2.6e-189 665.6 408 78.2
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 1.0e-188 663.7 410 78.3
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.3e-188 663.3 408 78.4
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 2.2e-188 662.5 408 77.9
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 2.9e-188 662.1 408 79.7
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.9e-188 662.1 408 79.7
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 6.5e-188 661.0 408 78.2
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 8.4e-188 660.6 407 80.1
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 8.4e-188 660.6 407 80.1
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.4e-187 659.8 411 76.2
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 1.4e-187 659.8 408 77.2
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 9.3e-187 657.1 407 79.4
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 1.2e-186 656.8 415 77.6
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.2e-186 656.8 408 76.2
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 6.0e-186 654.4 408 77.7
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 6.0e-186 654.4 409 77.3
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 7.9e-186 654.1 408 76.2
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 1.8e-185 652.9 408 77.7
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 5.1e-185 651.4 408 76.5
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.1e-184 650.2 408 78.7
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 1.6e-183 646.4 408 75.5
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 2.8e-183 645.6 409 77.3
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 2.8e-183 645.6 408 75.2
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 4.8e-183 644.8 408 77.7
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 1.1e-182 643.7 408 76.0
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 1.4e-182 643.3 410 75.9
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 1.8e-182 642.9 408 77.7
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 1.8e-182 642.9 408 77.9
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 3.1e-182 642.1 408 75.7
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 6.9e-182 641.0 401 76.1
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 9.0e-182 640.6 401 75.6
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 2.0e-181 639.4 409 76.3
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 4.5e-181 638.3 408 76.5
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 7.7e-181 637.5 408 75.2
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.0e-180 637.1 403 75.4
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 2.2e-180 636.0 408 76.2
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 6.5e-180 634.4 408 76.2
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.9e-179 632.9 408 75.7
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 1.6e-178 629.8 408 75.7
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 3.6e-178 628.6 408 74.8
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 3.6e-178 628.6 410 73.2
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 3.0e-177 625.5 408 75.5
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 5.1e-177 624.8 408 74.8
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 4.3e-176 621.7 408 74.8
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 9.7e-176 620.5 409 73.3
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 1.3e-175 620.2 408 73.5
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 1.4e-174 616.7 408 73.3
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 1.8e-174 616.3 408 71.8
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 3.1e-174 615.5 408 73.0
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.2e-173 613.6 409 72.4
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.2e-173 613.6 402 73.4
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 4.5e-173 611.7 408 71.8
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 7.7e-173 610.9 408 71.8
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.0e-172 610.5 408 73.5
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 1.3e-172 610.1 402 72.1
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 2.2e-172 609.4 408 72.8
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 2.2e-172 609.4 408 72.1
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 5.0e-172 608.2 407 72.0
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 6.5e-172 607.8 439 70.2
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 1.9e-171 606.3 412 72.6
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 5.5e-171 604.7 409 71.6
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 9.4e-171 604.0 407 71.7
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 2.1e-170 602.8 412 72.6
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 2.7e-170 602.4 412 72.6
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 2.7e-170 602.4 412 72.6
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 2.7e-170 602.4 412 72.6
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 2.7e-170 602.4 412 72.6
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 2.7e-170 602.4 411 72.5
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 7.9e-170 600.9 407 71.7
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 1.8e-169 599.7 412 71.6
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 2.3e-169 599.4 408 74.0
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 3.0e-169 599.0 409 71.9
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 1.5e-168 596.7 407 70.8
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 2.0e-168 596.3 412 71.6
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 3.3e-168 595.5 412 70.9
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 3.3e-168 595.5 403 72.5
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.3e-167 593.6 409 70.9
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 1.3e-167 593.6 410 72.4
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 1.7e-167 593.2 410 71.7
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 4.8e-167 591.7 406 71.4
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 8.2e-167 590.9 409 70.4
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 1.4e-166 590.1 408 70.1
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 2.4e-166 589.3 401 72.6
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 3.1e-166 589.0 405 71.1
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 3.1e-166 589.0 364 77.5
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 4.1e-166 588.6 405 71.1
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 9.1e-166 587.4 431 67.7
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.3e-164 583.6 360 78.1
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 6.5e-164 581.3 406 70.0
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 1.1e-163 580.5 412 70.4
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 1.9e-163 579.7 406 71.4
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 1.9e-163 579.7 403 70.7
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 2.5e-163 579.3 408 69.6
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.6e-162 576.6 413 69.2
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 3.0e-161 572.4 408 68.9
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 8.8e-161 570.9 408 67.4
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 2.0e-160 569.7 494 60.9
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 8.2e-159 564.3 403 68.5
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 1.1e-158 563.9 403 69.7
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 1.8e-158 563.1 403 69.5
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 8.5e-156 554.3 409 65.3
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 2.5e-155 552.7 408 67.4
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 9.7e-152 540.8 409 65.8
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 9.7e-152 540.8 405 64.7
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 9.7e-152 540.8 405 64.9
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 8.5e-148 527.7 351 73.5
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 8.5e-148 527.7 404 62.4
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 1.5e-147 526.9 313 82.4
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 5.4e-142 508.4 405 62.5
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 9.1e-142 507.7 410 60.5
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.1e-134 484.2 315 75.6
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 1.2e-133 480.7 416 56.2
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 2.6e-128 463.0 408 57.6
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 1.2e-120 437.6 360 61.1
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 4.7e-114 415.6 273 73.3
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 2.6e-112 409.8 313 64.2
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 4.9e-111 405.6 267 74.2
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 5.6e-107 392.1 273 68.9
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 7.6e-104 381.7 412 48.8
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 2.9e-103 379.8 418 46.7
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 7.1e-102 375.2 406 54.2
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 1.8e-97 360.5 432 45.6
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.2e-88 331.3 408 45.3
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 2.8e-82 310.1 253 63.6
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.7e-79 300.8 443 40.0
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 2.9e-71 273.5 176 75.0
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 3.8e-71 273.1 174 75.9
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 1.4e-70 271.2 161 84.5
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 6.7e-68 262.3 177 70.6
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.9e-63 246.9 213 56.8
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 9.1e-57 225.3 173 61.8
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 2.9e-55 220.3 350 35.4
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 3.8e-55 219.9 135 77.8
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 5.1e-52 209.5 193 54.9
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 3.1e-49 200.3 151 64.2
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 2.0e-48 197.6 112 82.1
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 2.3e-36 157.5 93 79.6
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 3.5e-32 143.7 97 71.1
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 3.7e-26 123.6 97 67.0
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 2.6e-19 100.9 84 64.3
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 3.7e-18 97.1 70 65.7
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 8.3e-18 95.9 227 30.4
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 4.3e-14 83.6 57 77.2


User provided reference genes

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