Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 2378.2 1203 100.0
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 1956.8 1400 74.4
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 1953.3 1401 74.2
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 1952.9 1401 74.6
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 1951.8 1387 75.2
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 1950.3 1401 74.5
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1948.7 1403 74.3
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 1947.9 1401 74.7
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 1946.4 1401 74.4
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 1944.5 1401 74.2
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1943.7 1403 74.1
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 1942.2 1400 74.5
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 1941.0 1401 74.3
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 1940.6 1401 74.2
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1940.2 1403 73.8
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1938.7 1402 74.1
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1938.7 1195 83.5
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 1938.3 1402 74.0
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1936.0 1404 73.7
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 1934.1 1402 73.7
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1933.7 1403 73.8
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 1933.7 1400 74.1
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 1933.3 1404 74.1
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 1932.9 1406 73.9
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 1930.2 1401 73.7
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 1929.5 1406 73.9
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 1928.7 1401 73.8
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 1928.3 1402 73.3
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 1927.9 1400 73.4
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 1927.9 1401 73.8
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 1924.8 1401 73.6
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 1924.1 1401 73.7
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 1924.1 1401 73.4
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1921.0 1400 72.9
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 1920.2 1402 73.4
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 1917.5 1401 73.2
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 1917.1 1400 73.1
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 1916.7 1401 73.0
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1915.6 1400 73.4
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 1915.2 1400 73.1
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 1912.9 1401 73.2
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1910.6 1402 72.8
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 1909.8 1402 72.8
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1909.4 1400 72.9
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 1909.0 1401 72.9
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 1909.0 1400 72.8
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 1907.9 1400 72.7
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1907.5 1400 72.6
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 1907.1 1401 73.1
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 1906.7 1402 72.6
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1906.7 1400 73.2
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 1906.0 1400 72.6
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 1904.8 1401 73.3
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 1902.9 1402 72.4
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1901.7 1400 72.4
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1900.6 1400 72.4
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 1899.0 1401 72.3
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 1898.2 1404 71.9
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 1897.9 1401 72.2
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1897.5 1400 72.2
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 1897.1 1400 72.1
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1897.1 1400 72.1
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 1896.3 1400 73.1
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 1891.3 1400 72.4
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 1889.4 1400 72.6
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1888.6 1427 71.1
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 1884.8 1401 72.3
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 1884.0 1402 71.8
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 1881.3 1402 71.6
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 1881.3 1403 71.6
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 1881.3 1402 72.3
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1879.4 1402 71.1
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 1873.6 1403 71.6
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 1873.2 1370 72.9
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 1870.9 1466 68.8
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 1859.0 1400 71.4
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 1857.0 1402 70.8
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 1856.6 1402 70.7
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 1852.4 1400 71.4
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 1850.9 1353 72.9
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 1841.6 1355 71.8
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 1834.7 1402 70.3
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 1827.0 1402 70.0
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 1825.8 1402 70.3
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 1825.4 1402 70.0
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 1825.1 1402 70.1
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 1822.8 1402 69.9
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 1821.2 1401 70.1
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 1820.8 1402 70.0
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 1819.7 1402 69.9
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 1817.7 1378 71.4
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 1816.2 1402 69.8
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 1816.2 1402 69.8
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 1807.0 1402 69.5
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 1807.0 1402 69.5
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 1805.4 1402 69.4
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 1778.8 1373 69.3
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 1777.7 1400 68.9
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 1775.4 1401 68.3
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 1753.0 1401 67.0
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 1713.7 1277 72.5
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 1699.5 1277 72.3
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 1682.9 1353 66.1
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 1669.4 1357 65.6
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1660.6 1280 70.3
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 1659.0 1349 64.8
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 1656.0 1387 63.7
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 1653.3 1365 65.1
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 1653.3 1365 65.1
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 1636.3 1362 66.6
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1466.8 1346 58.2
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1437.2 1365 57.2
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1398.6 1139 67.2
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1377.5 1127 66.9
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1234.2 1346 54.1
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1233.8 912 72.1
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1151.7 897 69.7
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 7.6e-300 1034.2 808 69.7
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 6.5e-299 1031.2 808 69.7
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 1.2e-249 867.5 659 70.9
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 5.4e-245 852.0 675 68.4
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 3.0e-240 836.3 657 69.4
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 1.5e-223 780.8 1016 46.5
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 1.2e-207 728.0 471 80.7
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.4e-205 721.1 470 79.1
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 6.0e-204 715.7 470 78.7
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 3.8e-190 669.8 417 81.8
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 8.2e-185 652.1 471 74.1
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 8.5e-174 615.5 556 60.4
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 9.8e-138 495.7 555 54.1
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 5.2e-131 473.4 1335 28.8
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 8.0e-116 422.9 1459 27.1
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 3.1e-91 341.3 1135 28.1
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 3.4e-90 337.8 174 94.8
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 7.4e-61 240.4 122 94.3
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 6.9e-59 233.8 138 84.1
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 2.7e-47 195.3 107 91.6
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 1.7e-28 132.9 99 69.7
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 1.7e-28 132.9 147 55.1
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 1.1e-27 130.2 91 73.6
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 4.8e-20 104.8 61 83.6


User provided reference genes

Program Settings