Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 2.9e-149 531.9 280 100.0
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 1.4e-132 476.5 280 86.4
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 5.1e-130 468.0 280 85.7
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 2.5e-129 465.7 280 85.0
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 2.5e-129 465.7 280 83.2
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 9.6e-129 463.8 280 84.3
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 2.8e-128 462.2 280 84.3
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 2.4e-127 459.1 280 83.9
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 3.1e-127 458.8 280 83.2
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 3.1e-127 458.8 280 82.9
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 3.1e-127 458.8 280 83.9
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 4.0e-127 458.4 279 81.4
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 4.0e-127 458.4 280 82.9
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 9.0e-127 457.2 275 84.4
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 1.2e-126 456.8 280 83.2
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.0e-126 456.1 275 84.0
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 3.4e-126 455.3 271 85.6
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 5.8e-126 454.5 280 82.5
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 5.8e-126 454.5 275 84.0
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 7.6e-126 454.1 279 81.7
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 9.9e-126 453.8 280 82.9
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 1.3e-125 453.4 280 82.9
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.7e-125 453.0 275 84.4
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 2.2e-125 452.6 280 80.7
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 3.8e-125 451.8 280 81.1
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 4.9e-125 451.4 280 80.7
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 4.9e-125 451.4 280 82.5
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 6.4e-125 451.1 275 82.2
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 8.4e-125 450.7 276 82.2
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 1.1e-124 450.3 280 81.8
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 3.2e-124 448.7 276 81.2
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 4.2e-124 448.4 278 83.1
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 7.1e-124 447.6 280 80.0
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 1.2e-123 446.8 280 80.0
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 1.2e-123 446.8 280 81.8
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 1.2e-123 446.8 280 81.1
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 2.7e-123 445.7 275 82.2
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 4.6e-123 444.9 280 79.3
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 1.0e-122 443.7 280 78.9
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 1.7e-122 443.0 280 80.4
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.3e-122 442.6 274 81.8
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 5.1e-122 441.4 280 78.6
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 6.6e-122 441.0 279 77.4
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.5e-121 439.9 277 77.6
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 9.6e-121 437.2 277 80.5
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 9.6e-121 437.2 275 80.7
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 9.6e-121 437.2 275 80.0
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 1.3e-120 436.8 277 78.3
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 2.1e-120 436.0 276 76.4
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 4.8e-120 434.9 280 76.4
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 8.1e-120 434.1 277 78.0
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 8.1e-120 434.1 280 79.3
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 1.1e-119 433.7 275 80.4
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 2.4e-119 432.6 277 76.5
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 1.2e-118 430.3 280 76.1
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 1.5e-118 429.9 280 78.2
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 3.4e-118 428.7 283 75.3
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 4.5e-118 428.3 276 77.2
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 2.9e-117 425.6 280 75.4
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 3.8e-117 425.2 280 75.7
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 6.4e-117 424.5 275 76.7
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 1.4e-116 423.3 335 68.4
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 1.9e-116 422.9 280 75.0
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 1.9e-116 422.9 280 75.0
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 2.4e-116 422.5 280 74.3
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 3.2e-116 422.2 280 74.6
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 4.2e-116 421.8 280 74.3
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 4.2e-116 421.8 274 77.0
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 5.4e-116 421.4 280 76.4
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 1.6e-115 419.9 280 74.3
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 2.1e-115 419.5 275 76.0
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 2.3e-114 416.0 275 74.9
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 3.0e-114 415.6 246 84.6
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 3.0e-114 415.6 280 75.7
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 6.7e-114 414.5 280 76.4
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 1.1e-113 413.7 280 75.0
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 2.5e-113 412.5 280 76.8
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 7.4e-113 411.0 354 63.8
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 1.3e-112 410.2 246 84.6
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 2.1e-112 409.5 280 75.4
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 4.8e-112 408.3 280 74.3
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 9.0e-111 404.1 267 74.9
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 1.9e-108 396.4 284 72.2
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 2.8e-104 382.5 244 77.5
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 2.8e-104 382.5 427 52.0
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 3.1e-103 379.0 298 66.4
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 4.2e-100 368.6 246 77.2
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 1.2e-99 367.1 234 78.6
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 1.8e-98 363.2 284 66.2
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.1e-97 360.5 295 62.7
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 2.5e-97 359.4 280 68.9
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 6.3e-96 354.8 280 68.6
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.4e-92 343.6 374 53.5
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 3.0e-90 335.9 322 56.8
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 6.7e-90 334.7 290 61.4
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 4.3e-89 332.0 275 67.3
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 1.7e-88 330.1 225 76.4
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 2.2e-77 293.1 295 58.3
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 5.0e-77 292.0 307 53.7
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 5.0e-77 292.0 168 86.3
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 6.5e-77 291.6 168 86.9
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 1.5e-76 290.4 203 73.9
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 1.1e-73 280.8 168 82.7
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.1e-73 280.8 293 49.8
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 1.5e-73 280.4 173 80.3
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 4.4e-73 278.9 188 78.2
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 4.5e-70 268.9 161 80.1
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 2.3e-66 256.5 157 77.7
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 5.2e-66 255.4 182 73.1
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 3.0e-58 229.6 144 76.4
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 3.2e-47 193.0 118 83.9
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 3.7e-40 169.5 131 71.0
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 6.6e-29 132.1 80 80.0
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 1.6e-27 127.5 142 51.4
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 5.2e-26 122.5 110 59.1
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 4.7e-19 99.4 94 56.4
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 6.2e-19 99.0 92 58.7
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 8.9e-18 95.1 94 54.3
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 4.4e-17 92.8 255 31.4
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 2.9e-16 90.1 209 43.1
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 1.4e-15 87.8 69 63.8
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 9.3e-15 85.1 73 61.6
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 1.4e-10 71.2 35 88.6
Ca_21900_v3 Cicer arietinum L. HOM05D000028 ORTHO05D000390 5.3e-10 69.3 293 26.6
Medtr4g106720 Medicago truncatula HOM05D000028 ORTHO05D000390 5.3e-10 69.3 288 25.0
Ca_29260_v3 Cicer arietinum L. HOM05D006104 ORTHO05D149040 1.5e-09 67.8 281 22.1
Pp3s42_60 Physcomitrium patens HOM05D000182 ORTHO05D011688 1.5e-09 67.8 267 26.2
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 1.7e-08 64.3 63 58.7
TPR.G37487 Trifolium pratense HOM05D000028 ORTHO05D000390 6.4e-08 62.4 293 23.9
arahy.Tifrunner.gnm1.ann1.MW20QI Arachis hypogaea HOM05D000028 ORTHO05D000390 1.4e-07 61.2 287 24.7
arahy.Tifrunner.gnm1.ann1.9RI9QX Arachis hypogaea HOM05D000028 ORTHO05D003251 4.2e-07 59.7 281 25.3
Actinidia33052 Actinidia chinensis HOM05D000028 ORTHO05D000390 5.4e-07 59.3 288 21.9
arahy.Tifrunner.gnm1.ann1.PZRY5L Arachis hypogaea HOM05D000028 ORTHO05D000390 5.4e-07 59.3 287 24.0
Rhsim08G0169500 Rhododendron simsii HOM05D000028 ORTHO05D000390 5.4e-07 59.3 298 21.8
Rhsim08G0169700 Rhododendron simsii HOM05D000028 ORTHO05D000390 2.1e-06 57.4 302 21.9
Atru.chr9.2427 Acer truncatum HOM05D000028 ORTHO05D000390 2.7e-06 57.0 294 20.7
vmacro19369 Vaccinium macrocarpon HOM05D000028 ORTHO05D000390 3.5e-06 56.6 300 22.0
CSS0020869 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000390 6.0e-06 55.8 294 21.8


User provided reference genes

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