Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 6.0e-64 247.3 120 100.0
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.1e-48 195.7 122 82.0
GSVIVG01006678001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.6e-30 135.6 69 94.2
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 7.5e-22 107.5 122 50.8
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 1.5e-17 93.2 89 55.1
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 8.0e-16 87.4 91 52.7
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 2.3e-15 85.9 91 51.6
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 2.3e-15 85.9 78 56.4
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 2.3e-15 85.9 118 44.9
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 3.0e-15 85.5 91 53.8
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 6.8e-15 84.3 75 57.3
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 6.8e-15 84.3 75 57.3
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 6.8e-15 84.3 89 52.8
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 6.8e-15 84.3 89 52.8
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 1.2e-14 83.6 75 56.0
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 1.2e-14 83.6 103 45.6
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 3.4e-14 82.0 89 51.7
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 4.4e-14 81.6 123 43.1
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 4.4e-14 81.6 87 51.7
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 7.5e-14 80.9 88 50.0
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 7.5e-14 80.9 88 48.9
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 7.5e-14 80.9 89 50.6
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 7.5e-14 80.9 89 49.4
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 1.7e-13 79.7 71 59.2
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 1.7e-13 79.7 71 59.2
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 2.2e-13 79.3 75 58.7
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 2.8e-13 79.0 80 53.8
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 3.7e-13 78.6 89 49.4
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 3.7e-13 78.6 84 53.6
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 4.8e-13 78.2 112 42.0
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 6.3e-13 77.8 81 50.6
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 8.3e-13 77.4 103 43.7
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 1.1e-12 77.0 115 41.7
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 1.4e-12 76.6 73 54.8
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.8e-12 76.3 64 56.2
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 1.8e-12 76.3 88 45.5
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 4.1e-12 75.1 83 48.2
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 7.0e-12 74.3 70 54.3
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 7.0e-12 74.3 78 50.0
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 9.1e-12 73.9 91 47.3
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 1.2e-11 73.6 115 37.4
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 1.2e-11 73.6 70 57.1
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 1.2e-11 73.6 87 48.3
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.6e-11 73.2 79 49.4
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 1.6e-11 73.2 74 51.4
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 3.5e-11 72.0 88 47.7
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 4.5e-11 71.6 63 52.4
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 4.5e-11 71.6 79 49.4
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 5.9e-11 71.2 112 36.6
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 7.7e-11 70.9 110 39.1
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 1.0e-10 70.5 63 52.4
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 1.0e-10 70.5 93 40.9
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 1.3e-10 70.1 70 54.3
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 1.3e-10 70.1 87 44.8
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.3e-10 70.1 88 44.3
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 1.3e-10 70.1 58 56.9
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 1.3e-10 70.1 79 49.4
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 2.3e-10 69.3 77 49.4
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 2.3e-10 69.3 84 44.0
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 2.3e-10 69.3 66 53.0
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 2.9e-10 68.9 96 44.8
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 3.8e-10 68.6 77 48.1
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 3.8e-10 68.6 77 48.1
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 3.8e-10 68.6 77 48.1
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 3.8e-10 68.6 77 48.1
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 3.8e-10 68.6 77 48.1
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 3.8e-10 68.6 77 48.1
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 5.0e-10 68.2 64 50.0
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 5.0e-10 68.2 64 50.0
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 5.0e-10 68.2 77 48.1
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 6.6e-10 67.8 73 49.3
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 8.6e-10 67.4 63 50.8
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 8.6e-10 67.4 104 38.5
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 1.1e-09 67.0 77 46.8
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 1.1e-09 67.0 80 47.5
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 1.1e-09 67.0 63 49.2
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 1.1e-09 67.0 85 44.7
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 1.9e-09 66.2 101 38.6
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 1.9e-09 66.2 108 38.0
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 1.9e-09 66.2 77 48.1
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 2.5e-09 65.9 77 46.8
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 2.5e-09 65.9 108 38.0
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 2.5e-09 65.9 64 46.9
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 4.2e-09 65.1 87 43.7
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 5.5e-09 64.7 88 42.0
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 5.5e-09 64.7 94 41.5
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 5.5e-09 64.7 94 41.5
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 7.2e-09 64.3 54 55.6
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 9.5e-09 63.9 85 42.4
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 9.5e-09 63.9 58 55.2
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 1.2e-08 63.5 68 48.5
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 2.1e-08 62.8 42 69.0
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 2.8e-08 62.4 88 39.8
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 6.1e-08 61.2 65 43.1
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 8.0e-08 60.8 59 47.5
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 1.4e-07 60.1 88 37.5
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 3.0e-07 58.9 59 47.5
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 3.0e-07 58.9 56 48.2
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 4.0e-07 58.5 50 56.0
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.2e-06 57.0 85 40.0


User provided reference genes

Program Settings