Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 7.9e-70 266.9 129 100.0
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 9.2e-26 120.6 65 86.2
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 3.6e-22 108.6 65 78.5
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 1.8e-21 106.3 65 67.7
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 1.8e-21 106.3 73 63.0
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 1.8e-21 106.3 65 73.8
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 1.8e-21 106.3 65 73.8
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 2.3e-21 105.9 65 73.8
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 2.3e-21 105.9 64 75.0
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 3.0e-21 105.5 81 61.7
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 3.0e-21 105.5 65 72.3
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 3.0e-21 105.5 65 72.3
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 4.0e-21 105.1 81 61.7
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 8.9e-21 104.0 65 73.8
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 8.9e-21 104.0 74 60.8
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 1.2e-20 103.6 65 70.8
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 1.2e-20 103.6 64 70.3
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 1.5e-20 103.2 63 77.8
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 1.5e-20 103.2 65 69.2
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 1.5e-20 103.2 65 70.8
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 1.5e-20 103.2 65 69.2
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 2.0e-20 102.8 65 72.3
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 2.6e-20 102.4 64 75.0
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 2.6e-20 102.4 64 75.0
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 2.6e-20 102.4 65 72.3
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 2.6e-20 102.4 65 69.2
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.6e-20 102.4 65 72.3
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 2.6e-20 102.4 65 70.8
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 4.4e-20 101.7 65 72.3
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 4.4e-20 101.7 65 69.2
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 5.7e-20 101.3 65 69.2
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 5.7e-20 101.3 65 69.2
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 5.7e-20 101.3 65 67.7
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 7.5e-20 100.9 65 69.2
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 9.8e-20 100.5 65 70.8
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 9.8e-20 100.5 65 69.2
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.3e-19 100.1 65 70.8
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 1.3e-19 100.1 65 70.8
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 1.3e-19 100.1 64 68.8
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 1.7e-19 99.8 65 69.2
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 3.7e-19 98.6 65 63.1
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 3.7e-19 98.6 65 64.6
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 4.9e-19 98.2 65 67.7
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 4.9e-19 98.2 65 69.2
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 4.9e-19 98.2 65 70.8
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 6.4e-19 97.8 75 60.0
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 6.4e-19 97.8 65 67.7
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 8.3e-19 97.4 65 66.2
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 8.3e-19 97.4 65 67.7
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 1.1e-18 97.1 72 61.1
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 1.1e-18 97.1 72 61.1
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.1e-18 97.1 64 68.8
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 1.4e-18 96.7 65 67.7
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 1.8e-18 96.3 65 64.6
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 1.8e-18 96.3 65 61.5
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 2.4e-18 95.9 65 63.1
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 2.4e-18 95.9 64 67.2
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 2.4e-18 95.9 64 67.2
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 2.4e-18 95.9 65 64.6
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 3.2e-18 95.5 65 66.2
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 3.2e-18 95.5 65 63.1
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 4.1e-18 95.1 65 61.5
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 5.4e-18 94.7 64 65.6
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 5.4e-18 94.7 64 64.1
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 5.4e-18 94.7 64 65.6
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 5.4e-18 94.7 64 65.6
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 5.4e-18 94.7 64 65.6
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 7.0e-18 94.4 63 63.5
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 9.2e-18 94.0 65 61.5
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 9.2e-18 94.0 64 65.6
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 9.2e-18 94.0 65 61.5
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 9.2e-18 94.0 65 61.5
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 1.2e-17 93.6 65 61.5
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 1.2e-17 93.6 65 61.5
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 1.2e-17 93.6 65 61.5
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 1.2e-17 93.6 65 61.5
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 1.6e-17 93.2 75 53.3
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 1.6e-17 93.2 65 61.5
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 2.0e-17 92.8 64 64.1
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 2.7e-17 92.4 65 60.0
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 2.7e-17 92.4 65 60.0
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 2.7e-17 92.4 65 60.0
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 2.7e-17 92.4 65 60.0
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 2.7e-17 92.4 65 60.0
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 3.5e-17 92.0 65 63.1
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 3.5e-17 92.0 59 66.1
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 5.9e-17 91.3 71 60.6
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 5.9e-17 91.3 66 63.6
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 7.8e-17 90.9 65 60.0
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 1.0e-16 90.5 65 61.5
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 1.7e-16 89.7 65 61.5
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.5e-15 86.7 79 51.9
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 3.3e-15 85.5 65 61.5
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 4.3e-15 85.1 90 48.9
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 5.6e-15 84.7 65 58.5
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 5.6e-15 84.7 65 58.5
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 3.6e-14 82.0 69 49.3
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 4.7e-14 81.6 64 54.7
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 1.4e-13 80.1 64 51.6
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 1.4e-13 80.1 64 53.1
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 1.8e-13 79.7 75 44.0
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 1.8e-13 79.7 64 51.6
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 4.0e-13 78.6 65 50.8
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 1.1e-10 70.5 45 66.7
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 4.3e-07 58.5 65 47.7


User provided reference genes

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