Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.2e-161 573.2 290 100.0
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 6.7e-117 424.5 290 77.2
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.9e-116 422.9 291 75.3
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 2.5e-116 422.5 290 76.6
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 3.1e-114 415.6 311 71.4
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 3.4e-113 412.1 320 70.6
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 7.6e-113 411.0 290 74.5
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 2.9e-112 409.1 290 73.8
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 2.9e-112 409.1 290 72.8
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 5.5e-111 404.8 323 69.0
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 9.3e-111 404.1 285 73.7
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.7e-110 402.5 291 71.5
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 3.5e-110 402.1 285 72.3
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 3.5e-110 402.1 285 74.0
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 4.6e-110 401.7 288 75.0
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 7.9e-110 401.0 282 72.3
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.3e-109 400.2 290 74.5
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.8e-109 399.8 285 74.0
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.0e-109 399.1 296 72.0
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 6.7e-109 397.9 284 75.4
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 8.7e-109 397.5 262 78.6
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 8.7e-109 397.5 286 74.5
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 1.1e-108 397.1 291 72.2
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.9e-108 396.4 287 71.8
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.9e-108 396.4 296 70.3
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 2.5e-108 396.0 287 72.8
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.3e-108 395.2 291 72.9
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 4.3e-108 395.2 285 72.6
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 7.4e-108 394.4 287 71.1
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 9.6e-108 394.0 288 70.5
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.3e-107 393.7 285 72.3
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.3e-107 393.7 288 70.5
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.3e-107 393.7 282 73.8
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 1.3e-107 393.7 285 72.3
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 1.3e-107 393.7 287 72.1
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 2.1e-107 392.9 285 70.2
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 2.1e-107 392.9 286 70.3
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 2.1e-107 392.9 282 72.7
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 2.8e-107 392.5 285 71.2
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 4.8e-107 391.7 291 70.1
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 4.8e-107 391.7 288 72.2
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.1e-106 390.6 269 77.0
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 3.1e-106 389.0 288 71.9
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 3.1e-106 389.0 290 70.7
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 3.1e-106 389.0 291 72.2
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 9.0e-106 387.5 287 70.7
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.0e-105 386.3 292 69.9
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 3.4e-105 385.6 265 74.0
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 3.4e-105 385.6 288 70.5
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 1.7e-104 383.3 288 71.5
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.7e-104 383.3 257 76.3
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 2.2e-104 382.9 287 70.0
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 2.9e-104 382.5 295 70.8
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.0e-104 381.7 287 70.0
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.4e-103 380.2 290 68.6
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 1.4e-103 380.2 233 81.1
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.2e-103 379.0 287 69.0
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 4.2e-103 378.6 295 69.5
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 5.5e-103 378.3 246 76.4
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 9.3e-103 377.5 285 68.8
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 9.3e-103 377.5 287 69.0
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.2e-102 377.1 288 70.5
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 1.6e-102 376.7 288 69.1
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 4.6e-102 375.2 285 68.8
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 7.9e-102 374.4 285 69.1
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.3e-101 373.6 236 79.2
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 5.1e-101 371.7 230 82.2
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 6.7e-101 371.3 285 68.8
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 6.7e-101 371.3 232 80.2
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 6.7e-101 371.3 285 68.4
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.5e-100 370.2 285 68.4
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.5e-100 370.2 286 70.3
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 3.3e-100 369.0 285 68.1
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 3.3e-100 369.0 285 68.4
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 3.3e-100 369.0 285 68.4
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 7.4e-100 367.9 234 79.1
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 9.7e-100 367.5 285 69.1
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 9.7e-100 367.5 286 68.2
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 9.7e-100 367.5 288 68.1
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.3e-99 367.1 292 68.2
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.8e-98 363.2 232 78.0
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.3e-98 361.7 291 64.9
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 9.0e-98 360.9 286 66.8
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.2e-97 360.5 285 68.8
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 2.0e-97 359.8 276 69.2
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 5.9e-97 358.2 289 65.7
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 5.9e-97 358.2 289 65.7
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 7.7e-97 357.8 302 65.2
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 2.9e-96 355.9 286 66.4
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 2.9e-96 355.9 286 66.4
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 2.9e-96 355.9 286 66.4
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 6.5e-96 354.8 250 72.4
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.9e-95 353.2 250 72.0
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 5.5e-95 351.7 246 71.5
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 5.5e-95 351.7 229 76.9
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 9.4e-95 350.9 223 80.3
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.6e-94 350.1 270 65.9
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 7.9e-94 347.8 222 77.5
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.8e-93 346.7 258 67.4
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 3.0e-93 345.9 287 64.8
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 3.9e-93 345.5 287 65.5
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.7e-93 344.7 287 65.5
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 5.7e-92 341.7 258 67.1
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 7.4e-92 341.3 288 65.3
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.8e-91 338.6 233 72.1
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.7e-88 330.1 235 68.9
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 3.8e-88 328.9 205 78.0
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 3.6e-86 322.4 268 62.7
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 1.4e-85 320.5 205 78.0
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.3e-85 319.7 195 82.6
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 3.9e-85 318.9 244 66.0
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 8.8e-85 317.8 230 69.1
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 8.8e-85 317.8 230 68.7
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 1.1e-84 317.4 203 79.3
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 5.7e-84 315.1 270 61.9
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 9.7e-84 314.3 205 76.6
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.7e-83 313.5 288 59.4
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 5.0e-80 302.0 200 78.0
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.2e-79 299.3 236 69.1
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 4.2e-79 298.9 233 69.1
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 1.2e-78 297.4 200 75.5
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 6.1e-78 295.0 223 70.0
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.7e-77 291.6 202 74.3
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 1.5e-76 290.4 230 64.3
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.3e-76 289.3 167 83.8
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 4.4e-76 288.9 241 65.1
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 3.1e-74 282.7 239 61.5
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 1.0e-72 277.7 201 69.7
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 4.2e-71 272.3 285 54.0
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 4.2e-71 272.3 235 60.4
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.6e-70 270.4 190 74.7
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 8.8e-69 264.6 234 59.0
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.2e-67 260.0 193 69.9
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 8.0e-62 241.5 231 53.7
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 4.4e-60 235.7 240 51.7
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.7e-59 232.6 287 48.4
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 2.4e-58 229.9 206 59.7
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.0e-56 224.6 151 75.5
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 5.6e-55 218.8 136 75.0
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 2.9e-51 206.5 138 76.1
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.4e-45 187.6 148 67.6
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.4e-44 183.0 148 66.9
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 5.4e-42 175.6 159 62.3
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.0e-41 172.2 134 68.7
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.6e-39 165.6 138 63.0
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.6e-39 165.6 138 63.0
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 3.7e-35 152.9 123 63.4
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.4e-34 150.2 118 68.6
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 4.0e-29 132.9 158 49.4
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.8e-27 126.3 74 82.4
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 8.4e-27 125.2 74 82.4
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.4e-26 124.4 74 81.1
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.9e-26 124.0 74 81.1
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 9.2e-26 121.7 74 78.4
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 5.1e-24 115.9 75 78.7
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.1e-23 114.8 193 37.3
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 3.6e-22 109.8 143 44.8
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.2e-20 104.8 68 77.9
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 2.1e-17 94.0 70 70.0
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 6.0e-17 92.4 64 75.0
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 7.8e-17 92.0 66 74.2
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 3.1e-13 80.1 56 76.8
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 5.3e-13 79.3 82 58.5
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 9.9e-12 75.1 44 81.8
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 1.3e-11 74.7 46 84.8
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.1e-10 71.6 64 59.4
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 1.4e-10 71.2 44 75.0
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 2.3e-08 63.9 62 54.8
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 4.3e-07 59.7 37 67.6
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 4.3e-07 59.7 37 67.6
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.6e-06 57.8 240 27.1


User provided reference genes

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