Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01032870001 Vitis vinifera HOM05D007521 ORTHO05D009387 2.5e-153 545.4 275 100.0
TAR636G2090 Trochodendron aralioides HOM05D007521 ORTHO05D009387 3.7e-77 292.4 217 66.8
Dinv34514 Davidia involucrata HOM05D007521 ORTHO05D009387 5.4e-76 288.5 221 66.5
Nn2g10221 Nelumbo nucifera HOM05D007521 ORTHO05D009387 6.6e-74 281.6 240 63.3
Potri.019G065400 Populus trichocarpa HOM05D007521 ORTHO05D009387 3.3e-73 279.3 250 59.6
CiPaw.08G156100 Carya illinoinensis HOM05D007521 ORTHO05D009387 1.6e-72 276.9 257 58.8
PSO384G1785 Papaver somniferum HOM05D007521 ORTHO05D009387 1.4e-71 273.9 228 61.4
MD07G1238600 Malus domestica HOM05D007521 ORTHO05D009387 5.2e-71 271.9 270 55.2
PSO339G2910 Papaver somniferum HOM05D007521 ORTHO05D009387 2.0e-70 270.0 228 61.0
QL08p065346 Quercus lobata HOM05D007521 ORTHO05D009387 2.6e-70 269.6 259 57.9
Prupe.2G267400 Prunus persica HOM05D007521 ORTHO05D009387 4.4e-70 268.9 257 58.4
Duzib114G0131 Durio zibethinus HOM05D007521 ORTHO05D009387 2.9e-69 266.2 292 51.4
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 4.9e-69 265.4 213 62.0
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 4.9e-69 265.4 212 62.7
Gorai.009G291900 Gossypium raimondii HOM05D007521 ORTHO05D009387 3.2e-68 262.7 292 52.1
Gohir.D05G278400 Gossypium hirsutum HOM05D007521 ORTHO05D009387 1.2e-67 260.8 292 51.4
Nitab4.5_0011372g0030 Nicotiana tabacum HOM05D007521 ORTHO05D009387 2.7e-67 259.6 211 61.1
Lalb_Chr11g0067611 Lupinus albus HOM05D007521 ORTHO05D009387 4.6e-67 258.8 215 61.9
Thecc.10G187600 Theobroma cacao HOM05D007521 ORTHO05D009387 1.3e-66 257.3 293 52.2
Gohir.A05G276700 Gossypium hirsutum HOM05D007521 ORTHO05D009387 6.6e-66 255.0 292 50.7
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 1.1e-65 254.2 213 63.8
TWI09G0709 Tripterygium wilfordii HOM05D007521 ORTHO05D009387 3.3e-65 252.7 205 62.0
Lj1g0021108 Lotus japonicus HOM05D007521 ORTHO05D009387 2.1e-64 250.0 219 62.6
Actinidia31757 Actinidia chinensis HOM05D007521 ORTHO05D009387 4.8e-64 248.8 225 62.2
Cpa.g.sc65.80 Carica papaya HOM05D007521 ORTHO05D009387 1.4e-63 247.3 235 57.0
Eucgr.G03172 Eucalyptus grandis HOM05D007521 ORTHO05D009387 2.4e-63 246.5 249 56.2
FvH4_7g26320 Fragaria vesca HOM05D007521 ORTHO05D009387 4.0e-63 245.7 251 55.0
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 5.3e-63 245.4 198 64.1
ECA233G6052 Erigeron canadensis HOM05D007521 ORTHO05D009387 1.2e-62 244.2 211 59.7
Migut.F00560 Erythranthe guttata HOM05D007521 ORTHO05D009387 2.0e-62 243.4 247 56.3
FAN10G3062 Fragaria x ananassa HOM05D007521 ORTHO05D009387 2.0e-62 243.4 251 54.6
Nitab4.5_0000375g0330 Nicotiana tabacum HOM05D007521 ORTHO05D009387 2.0e-62 243.4 223 57.4
Sabra19G0079100 Salix brachista HOM05D007521 ORTHO05D009387 3.4e-62 242.7 250 54.4
Cc02_g04870 Coffea canephora HOM05D007521 ORTHO05D009387 1.7e-61 240.4 210 58.6
Cc02_g05020 Coffea canephora HOM05D007521 ORTHO05D009387 2.2e-61 240.0 210 59.0
TPR.G13979 Trifolium pratense HOM05D007521 ORTHO05D009387 3.8e-61 239.2 207 60.4
MSTRG.8869 Avicennia marina HOM05D007521 ORTHO05D009387 4.9e-61 238.8 233 55.8
CANSAT56G2803 Cannabis sativa HOM05D007521 ORTHO05D009387 6.4e-61 238.4 210 57.1
Medtr3g093540 Medicago truncatula HOM05D007521 ORTHO05D009387 6.4e-61 238.4 244 55.3
FAN06G0083 Fragaria x ananassa HOM05D007521 ORTHO05D009387 8.4e-61 238.0 260 53.1
PGR142G4361 Punica granatum HOM05D007521 ORTHO05D009387 5.4e-60 235.3 243 53.9
CiPaw.08G155800 Carya illinoinensis HOM05D007521 ORTHO05D009387 4.6e-59 232.3 258 52.7
HanXRQChr08g0223011 Helianthus annuus HOM05D007521 ORTHO05D009387 4.6e-59 232.3 212 56.6
RcHm_v2.0_Chr1g0372781 Rosa chinensis HOM05D007521 ORTHO05D009387 1.7e-58 230.3 252 52.4
Sc11g0006120 Simmondsia chinensis HOM05D007521 ORTHO05D009387 3.0e-58 229.6 222 57.7
Aqoxy4G03316 Aquilegia oxysepala HOM05D007521 ORTHO05D009387 1.5e-57 227.3 205 58.0
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 1.9e-57 226.9 185 62.7
Glyma.04G224700 Glycine max HOM05D007521 ORTHO05D009387 7.3e-57 224.9 206 58.3
arahy.Tifrunner.gnm1.ann1.Q2LGCQ Arachis hypogaea HOM05D007521 ORTHO05D009387 1.4e-55 220.7 193 59.6
Atru.BG.268.p Acer truncatum HOM05D007521 ORTHO05D009387 1.2e-54 217.6 193 58.0
EL10Ac2g02694 Beta vulgaris HOM05D007521 ORTHO05D009387 4.5e-54 215.7 213 55.4
Phvul.009G041300 Phaseolus vulgaris HOM05D007521 ORTHO05D009387 4.5e-54 215.7 216 55.6
Psat5g070120 Pisum sativum HOM05D007521 ORTHO05D009387 5.8e-54 215.3 232 53.4
Hma1.2p1_0264F.1_g105770 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 1.7e-53 213.8 225 54.2
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 1.7e-53 213.8 247 51.8
Sp7g18440 Schrenkiella parvula HOM05D007521 ORTHO05D009387 3.2e-52 209.5 251 49.4
THA.LOC104811673 Tarenaya hassleriana HOM05D007521 ORTHO05D009387 1.6e-51 207.2 205 53.7
AL7G33920 Arabidopsis lyrata HOM05D007521 ORTHO05D009387 6.0e-51 205.3 242 50.0
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 6.0e-51 205.3 241 50.6
Carub.0007s2116 Capsella rubella HOM05D007521 ORTHO05D009387 7.9e-51 204.9 240 49.6
CSS0047724 Camellia sinensis var. sinensis HOM05D007521 ORTHO05D009387 1.8e-50 203.8 158 67.7
ATR1127G230 Amborella trichopoda HOM05D007521 ORTHO05D009387 3.0e-50 203.0 204 52.9
A01p11790 Brassica napus HOM05D007521 ORTHO05D009387 2.5e-49 199.9 231 51.5
BraA01t01121Z Brassica rapa HOM05D007521 ORTHO05D009387 3.3e-49 199.5 234 50.9
C01p13990 Brassica napus HOM05D007521 ORTHO05D009387 9.6e-49 198.0 242 48.3
BolC1t01366H Brassica oleracea HOM05D007521 ORTHO05D009387 9.6e-49 198.0 242 48.3
BcaC09g51354 Brassica carinata HOM05D007521 ORTHO05D009387 2.1e-48 196.8 194 56.2
BcaNung01738 Brassica carinata HOM05D007521 ORTHO05D009387 5.3e-47 192.2 258 46.9
CDE11G1245 Ceratophyllum demersum HOM05D007521 ORTHO05D009387 6.9e-47 191.8 163 59.5
Aa31LG6G2400 Aethionema arabicum HOM05D007521 ORTHO05D009387 3.4e-46 189.5 214 48.6
CARHR226760 Cardamine hirsuta HOM05D007521 ORTHO05D009387 1.0e-45 188.0 244 46.3
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 2.2e-45 186.8 207 51.2
Peaxi162Scf00167g01120 Petunia axillaris HOM05D007521 ORTHO05D009387 8.4e-45 184.9 158 58.9
unitig_37.g11916 Utricularia gibba HOM05D007521 ORTHO05D009387 8.4e-45 184.9 201 50.7
Cfa001178 Carpinus fangiana HOM05D007521 ORTHO05D009387 1.3e-40 171.0 133 67.7
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 1.4e-39 167.5 164 55.5
HPP92_019762 Vanilla planifolia HOM05D007521 ORTHO05D009387 4.5e-38 162.5 169 51.5
Oeu001369.2 Olea europaea HOM05D007521 ORTHO05D009387 5.0e-37 159.1 150 59.3
Zm00001eb284340 Zea mays HOM05D007521 ORTHO05D009387 4.6e-35 152.5 189 49.7
Lj8C51T1 Lonicera japonica HOM05D007521 ORTHO05D009387 7.9e-35 151.8 123 61.0
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 1.1e-33 147.9 217 41.0
Solyc05g052170.4 Solanum lycopersicum HOM05D007521 ORTHO05D009387 5.7e-33 145.6 126 57.9
Sopen05g030700 Solanum pennellii HOM05D007521 ORTHO05D009387 5.7e-33 145.6 126 57.1
COL.COLO4_19497 Corchorus olitorius HOM05D007521 ORTHO05D009387 2.0e-30 137.1 152 50.0
Actinidia07775 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.9e-29 133.3 164 49.4
Manes.10G004400 Manihot esculenta HOM05D007521 ORTHO05D009387 3.2e-28 129.8 129 58.1
AagrBONN_evm.TU.Sc2ySwM_228.2023 Anthoceros agrestis HOM05D007521 ORTHO05D009387 2.1e-27 127.1 175 41.1
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 3.0e-26 123.2 177 39.5
Ah.12g064700 Amaranthus hybridus HOM05D007521 ORTHO05D009387 1.7e-24 117.5 92 62.0
AT4G19985 Arabidopsis thaliana HOM05D007521 ORTHO05D009387 2.8e-24 116.7 168 46.4
Gohir.D10G155835 Gossypium hirsutum HOM05D007521 ORTHO05D009387 2.8e-24 116.7 86 69.8
Hund13426 Selenicereus undatus HOM05D007521 ORTHO05D009387 9.1e-23 111.7 125 50.4
Thhalv10026093m.g Eutrema salsugineum HOM05D007521 ORTHO05D009387 7.7e-22 108.6 137 46.0
SMO356G0638 Selaginella moellendorffii HOM05D007521 ORTHO05D009387 5.0e-21 105.9 218 33.9
SEGI_30344 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 1.9e-20 104.0 138 43.5
Gorai.011G175800 Gossypium raimondii HOM05D007521 ORTHO05D009387 3.2e-20 103.2 86 64.0
Hma1.2p1_0264F.1_g105790 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 9.4e-20 101.7 106 53.8
Actinidia01020 Actinidia chinensis HOM05D007521 ORTHO05D009387 3.7e-16 89.7 86 54.7
Hma1.2p1_0264F.1_g105780 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 4.8e-16 89.4 63 69.8
Gorai.007G054900 Gossypium raimondii HOM05D007521 ORTHO05D009387 6.3e-16 89.0 71 64.8
Gohir.D11G050600 Gossypium hirsutum HOM05D007521 ORTHO05D009387 2.4e-15 87.0 72 62.5
CDE04G1691 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 1.9e-12 77.4 85 52.9
CBR_g4502 Chara braunii HOM05D007521 ORTHO05D009387 1.9e-12 77.4 85 45.9
SEGI_20264 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 2.1e-11 73.9 74 50.0
Cre10.g464264 Chlamydomonas reinhardtii HOM05D007521 ORTHO05D009387 1.4e-10 71.2 89 39.3
MCO10G123 Micromonas commoda HOM05D003003 ORTHO05D009387 3.1e-07 60.1 78 41.0
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 3.1e-07 60.1 116 31.9
Carub.0001s3039 Capsella rubella HOM05D003003 ORTHO05D008343 7.0e-07 58.9 131 30.5
PGR004G0262 Punica granatum HOM05D003003 ORTHO05D008343 7.0e-07 58.9 116 31.0
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 9.1e-07 58.5 90 35.6
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 9.1e-07 58.5 116 31.9
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 1.2e-06 58.2 128 29.7
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 1.6e-06 57.8 85 35.3
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 1.6e-06 57.8 132 30.3
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 2.0e-06 57.4 90 34.4
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 2.0e-06 57.4 81 37.0
MD04G1177300 Malus domestica HOM05D003003 ORTHO05D008343 2.7e-06 57.0 89 36.0
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 2.7e-06 57.0 136 27.9
Sed0024487 Sechium edule HOM05D003003 ORTHO05D008343 2.7e-06 57.0 81 35.8
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 3.5e-06 56.6 115 31.3
EL10Ac7g17135 Beta vulgaris HOM05D003003 ORTHO05D008343 4.5e-06 56.2 116 30.2
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 4.5e-06 56.2 83 33.7
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 4.5e-06 56.2 81 35.8
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 4.5e-06 56.2 134 29.1
VMungo1383G2339 Vigna mungo HOM05D003003 ORTHO05D008343 4.5e-06 56.2 119 26.9
BcaC05g27931 Brassica carinata HOM05D003003 ORTHO05D008343 5.9e-06 55.8 83 34.9
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 5.9e-06 55.8 83 34.9
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 5.9e-06 55.8 83 34.9
BraA05t21414Z Brassica rapa HOM05D003003 ORTHO05D008343 5.9e-06 55.8 83 34.9
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 5.9e-06 55.8 136 27.2
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 7.7e-06 55.5 81 35.8
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 7.7e-06 55.5 87 35.6
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 7.7e-06 55.5 93 33.3
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 7.7e-06 55.5 107 30.8
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 7.7e-06 55.5 81 34.6
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 7.7e-06 55.5 84 32.1
Prupe.6G296900 Prunus persica HOM05D003003 ORTHO05D008343 7.7e-06 55.5 93 33.3
Rhsim05G0233000 Rhododendron simsii HOM05D003003 ORTHO05D008343 7.7e-06 55.5 186 24.2
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 7.7e-06 55.5 84 32.1
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 7.7e-06 55.5 84 32.1
vmacro20392 Vaccinium macrocarpon HOM05D003003 ORTHO05D008343 7.7e-06 55.5 116 30.2


User provided reference genes

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