Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 1.5e-308 1062.0 534 100.0
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 2.3e-200 702.6 637 59.7
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.6e-193 679.9 651 58.8
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 3.7e-190 668.7 635 58.0
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 8.3e-190 667.5 640 57.0
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 1.9e-189 666.4 632 58.7
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 7.0e-189 664.5 635 58.4
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 1.6e-188 663.3 622 58.2
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 7.8e-188 661.0 634 56.3
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.3e-187 660.2 637 58.2
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 4.3e-186 655.2 631 58.2
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 7.3e-186 654.4 635 56.1
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 9.5e-186 654.1 648 57.6
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 8.1e-185 651.0 613 57.3
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 2.0e-183 646.4 634 56.0
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 2.0e-183 646.4 677 53.9
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 5.8e-183 644.8 633 55.1
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 1.7e-182 643.3 634 55.5
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 3.7e-182 642.1 637 55.1
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 1.9e-181 639.8 651 55.3
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 7.8e-180 634.4 638 55.2
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 3.0e-179 632.5 605 56.5
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 5.1e-179 631.7 641 54.0
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.2e-177 627.1 619 55.1
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 1.6e-177 626.7 639 54.9
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 8.1e-177 624.4 624 53.2
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 1.4e-176 623.6 625 56.6
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 1.8e-176 623.2 612 55.6
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 2.4e-176 622.9 634 54.4
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 6.8e-176 621.3 611 53.4
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.2e-175 620.5 533 61.2
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.0e-175 619.8 631 54.5
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 5.8e-175 618.2 633 54.0
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 1.3e-174 617.1 627 55.3
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 3.8e-174 615.5 576 59.2
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 2.4e-173 612.8 627 54.9
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 4.1e-173 612.1 613 54.8
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 2.1e-172 609.8 595 54.6
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 2.1e-172 609.8 634 53.8
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 3.5e-172 609.0 647 53.8
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 7.8e-172 607.8 618 53.6
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 1.7e-171 606.7 634 53.9
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 2.3e-171 606.3 624 52.4
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 3.9e-171 605.5 631 53.7
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 1.9e-170 603.2 652 51.8
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 9.6e-170 600.9 634 53.2
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 1.6e-169 600.1 638 52.5
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 8.1e-169 597.8 626 53.5
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 2.4e-168 596.3 642 52.6
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 2.4e-168 596.3 632 53.2
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.0e-167 593.2 679 49.9
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 1.3e-166 590.5 640 51.9
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 2.2e-166 589.7 605 53.7
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 1.4e-165 587.0 627 53.0
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 2.7e-164 582.8 638 50.8
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.3e-163 580.5 617 52.5
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 3.3e-162 575.9 623 50.9
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 9.6e-162 574.3 628 51.4
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 2.8e-161 572.8 627 51.8
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 1.8e-160 570.1 633 50.7
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 1.8e-160 570.1 552 57.1
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 4.0e-160 568.9 586 52.9
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 4.0e-160 568.9 585 54.0
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 2.0e-159 566.6 591 52.1
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 3.4e-159 565.8 495 62.6
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 9.9e-159 564.3 607 53.2
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 3.8e-158 562.4 624 51.0
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.2e-157 559.3 681 47.9
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 4.2e-157 558.9 634 48.9
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 5.4e-157 558.5 638 50.0
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 9.3e-157 557.8 625 51.0
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.5e-156 555.8 654 49.8
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.0e-155 554.3 637 50.5
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 1.0e-155 554.3 640 50.0
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 3.9e-155 552.4 595 52.3
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 8.7e-155 551.2 648 49.5
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 2.5e-154 549.7 593 53.5
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 1.3e-153 547.4 618 52.4
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 2.8e-153 546.2 596 50.8
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 6.2e-153 545.0 652 50.6
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 7.6e-151 538.1 584 51.0
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 2.4e-149 533.1 603 49.4
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 3.2e-149 532.7 566 53.4
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 1.6e-148 530.4 615 47.5
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 4.6e-148 528.9 642 46.4
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 1.0e-147 527.7 599 49.1
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 1.8e-147 526.9 634 47.6
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 3.9e-147 525.8 547 54.3
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.1e-146 524.2 627 48.2
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.5e-146 523.9 632 46.5
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.9e-146 523.5 561 51.7
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 5.6e-146 521.9 636 48.3
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.1e-145 520.0 609 47.9
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 2.8e-145 519.6 644 46.1
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 6.2e-145 518.5 639 47.6
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 4.0e-144 515.8 612 47.4
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.3e-142 510.8 612 47.1
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 2.9e-142 509.6 617 46.8
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.9e-142 509.6 642 47.2
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.4e-141 507.3 517 55.1
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 3.2e-141 506.1 593 49.1
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 5.7e-138 495.4 608 47.4
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 5.7e-138 495.4 602 48.0
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 5.7e-138 495.4 602 48.0
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 5.7e-138 495.4 583 48.2
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.3e-137 494.2 589 49.4
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 4.8e-137 492.3 491 53.8
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 8.2e-137 491.5 606 46.7
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 8.2e-137 491.5 606 46.7
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 1.1e-136 491.1 624 46.0
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 2.4e-136 490.0 606 46.5
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.2e-135 487.6 419 60.1
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 1.3e-134 484.2 472 55.7
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 7.2e-133 478.4 527 51.4
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 7.2e-133 478.4 539 49.0
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.6e-132 476.1 584 45.9
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.9e-132 474.9 560 47.7
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 1.8e-131 473.8 519 49.5
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 4.8e-129 465.7 643 44.0
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.0e-126 458.0 623 45.7
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 2.9e-126 456.4 566 46.3
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 6.5e-126 455.3 483 52.6
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 1.0e-123 448.0 373 61.9
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 8.8e-123 444.9 385 59.7
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.1e-122 444.5 558 48.4
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.2e-111 407.9 511 46.6
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 2.2e-110 403.7 390 53.1
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 3.6e-108 396.4 626 40.7
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 2.6e-106 390.2 616 39.6
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 4.4e-106 389.4 419 51.6
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 4.1e-104 382.9 392 50.5
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.5e-101 374.4 473 45.2
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.5e-101 374.4 473 45.2
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 1.2e-100 371.3 582 41.8
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 2.7e-100 370.2 703 35.1
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.0e-99 368.2 421 49.4
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 4.8e-97 359.4 461 45.8
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 6.4e-73 279.3 664 32.7
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 4.3e-61 240.0 340 38.8
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 2.8e-60 237.3 498 33.3
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.2e-58 231.9 316 45.3
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 4.9e-49 199.9 195 48.2
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 3.5e-47 193.7 141 68.1
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 3.1e-43 180.6 280 42.9
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 8.2e-28 129.4 363 28.1
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.9e-25 120.9 153 47.1
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 5.7e-21 106.7 64 76.6
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 1.4e-14 85.5 126 42.9
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-08 64.7 39 69.2
SEGI_38081 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 7.2e-08 63.2 55 56.4
CARHR207570 Cardamine hirsuta HOM05D004604 ORTHO05D116251 1.2e-07 62.4 72 51.4
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 3.6e-07 60.8 64 48.4


User provided reference genes

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