Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 2.0e-155 552.4 278 100.0
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 6.2e-112 407.9 278 73.7
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 7.6e-110 401.0 278 72.3
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 1.7e-109 399.8 278 73.0
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 6.0e-107 391.3 278 71.9
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 3.3e-105 385.6 254 75.6
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 1.8e-103 379.8 278 69.8
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 9.0e-103 377.5 278 68.3
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.6e-102 375.9 279 71.3
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 4.4e-102 375.2 274 70.1
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 5.8e-102 374.8 278 69.8
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 9.9e-102 374.0 278 68.3
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.3e-101 373.6 278 68.7
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 2.9e-101 372.5 281 67.6
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 4.9e-101 371.7 280 69.6
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 8.4e-101 370.9 278 67.6
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.4e-100 370.2 280 68.9
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.4e-100 370.2 275 71.3
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 1.9e-100 369.8 277 66.4
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 3.2e-100 369.0 279 67.7
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 1.6e-99 366.7 280 68.2
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 3.5e-99 365.5 226 80.5
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.5e-99 365.5 278 68.0
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 4.6e-99 365.2 265 68.3
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 4.6e-99 365.2 279 69.9
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 1.3e-98 363.6 275 67.3
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 1.3e-98 363.6 232 75.0
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 1.3e-98 363.6 278 67.3
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 2.3e-98 362.8 278 66.5
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 5.1e-98 361.7 280 67.9
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 5.1e-98 361.7 273 68.1
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 6.6e-98 361.3 277 68.2
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 6.6e-98 361.3 281 66.5
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 1.9e-97 359.8 207 84.1
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 1.9e-97 359.8 277 67.1
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 3.3e-97 359.0 278 66.5
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 3.3e-97 359.0 280 67.5
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 5.6e-97 358.2 277 68.6
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 7.3e-97 357.8 280 67.9
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 2.1e-96 356.3 218 78.4
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.8e-96 355.9 247 71.3
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.8e-96 355.9 220 79.5
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.6e-96 355.5 253 70.8
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 4.8e-96 355.1 249 71.1
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 6.2e-96 354.8 280 66.8
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 6.2e-96 354.8 277 67.9
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 6.2e-96 354.8 265 67.2
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.1e-95 354.0 276 65.6
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.4e-95 353.6 207 81.6
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 2.4e-95 352.8 237 72.6
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.4e-95 352.8 218 79.8
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 6.9e-95 351.3 278 65.5
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 6.9e-95 351.3 266 68.4
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 6.9e-95 351.3 270 68.5
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 9.0e-95 350.9 279 66.7
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 1.5e-94 350.1 278 65.8
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 2.6e-94 349.4 270 67.4
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.4e-94 349.0 278 64.4
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 3.4e-94 349.0 216 78.2
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 4.5e-94 348.6 278 64.4
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 5.8e-94 348.2 214 79.9
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 5.8e-94 348.2 278 64.7
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 5.8e-94 348.2 282 66.3
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 7.6e-94 347.8 278 65.8
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 1.3e-93 347.1 278 64.0
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.7e-93 346.7 247 69.2
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 2.9e-93 345.9 225 73.3
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 4.9e-93 345.1 278 64.0
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 6.4e-93 344.7 270 66.3
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 8.4e-93 344.4 279 64.2
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 1.1e-92 344.0 282 63.8
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.4e-92 343.6 254 67.7
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 1.9e-92 343.2 252 68.7
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 2.4e-92 342.8 205 80.0
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.2e-92 342.4 207 79.7
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 3.2e-92 342.4 247 70.4
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 3.2e-92 342.4 265 64.9
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 5.4e-92 341.7 274 65.0
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 5.4e-92 341.7 204 80.4
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 5.4e-92 341.7 278 62.9
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 5.4e-92 341.7 232 71.6
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 1.2e-91 340.5 212 77.4
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 2.1e-91 339.7 228 72.4
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 2.7e-91 339.3 262 66.4
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 1.8e-90 336.7 277 63.9
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 1.8e-90 336.7 248 67.7
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 8.7e-90 334.3 244 68.9
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 4.3e-89 332.0 236 68.2
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 7.4e-89 331.3 220 71.4
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 3.7e-88 328.9 253 67.2
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 4.8e-88 328.6 218 72.5
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 8.1e-88 327.8 280 62.9
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.8e-87 326.6 247 69.2
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 1.8e-87 326.6 205 78.0
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 3.1e-87 325.9 273 62.6
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 3.1e-87 325.9 279 59.5
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 3.1e-87 325.9 213 72.3
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.2e-86 323.9 232 68.5
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 2.6e-86 322.8 282 61.7
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 4.5e-86 322.0 277 63.5
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 9.9e-86 320.9 277 63.5
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 1.7e-85 320.1 252 65.5
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 4.9e-85 318.5 218 69.3
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 6.4e-85 318.2 204 78.9
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 8.7e-82 307.8 256 63.3
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.9e-81 306.6 195 76.9
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 2.5e-81 306.2 245 63.3
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 1.1e-79 300.8 227 63.9
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 2.4e-79 299.7 253 57.3
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 5.5e-76 288.5 216 69.9
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 3.5e-75 285.8 197 72.1
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 1.6e-72 276.9 206 67.5
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 8.2e-72 274.6 255 54.1
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 4.5e-70 268.9 215 59.5
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 2.9e-69 266.2 237 57.4
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.4e-63 247.3 182 70.9
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 1.1e-60 237.7 227 53.3
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 7.2e-60 235.0 238 52.1
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.8e-58 230.3 194 64.9
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 5.1e-58 228.8 209 53.1
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.1e-57 227.6 214 58.4
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 1.7e-56 223.8 221 53.8
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 3.5e-54 216.1 212 52.4
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 3.8e-53 212.6 240 44.6
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 8.5e-53 211.5 130 77.7
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 2.3e-50 203.4 197 56.9
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 2.8e-48 196.4 237 39.2
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 7.2e-44 181.8 109 79.8
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 5.3e-39 165.6 212 39.6
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 5.2e-34 149.1 109 71.6
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 6.8e-34 148.7 141 59.6
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.3e-32 144.4 130 60.8
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 2.6e-25 120.2 91 63.7
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 3.4e-25 119.8 88 70.5
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 2.3e-21 107.1 160 38.8
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 1.0e-18 98.2 61 82.0
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 6.4e-16 89.0 112 44.6
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 4.3e-12 76.3 58 67.2
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 5.6e-12 75.9 260 29.6
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 4.9e-08 62.8 60 53.3


User provided reference genes

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