Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 1.2e-275 952.6 484 100.0
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 4.1e-228 794.7 484 80.0
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 1.3e-226 789.6 490 79.4
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 6.1e-224 780.8 489 78.5
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 6.1e-224 780.8 483 79.7
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 3.0e-223 778.5 487 79.1
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 1.5e-222 776.2 487 78.9
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 7.5e-222 773.9 488 78.7
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 9.8e-222 773.5 492 78.7
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 3.1e-220 768.5 490 78.4
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 7.7e-219 763.8 495 77.0
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 2.9e-218 761.9 486 77.0
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 3.8e-218 761.5 489 77.3
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 8.6e-218 760.4 490 79.8
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 1.1e-217 760.0 495 75.4
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.1e-217 760.0 489 76.5
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 1.1e-217 760.0 486 77.4
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 1.5e-217 759.6 485 78.1
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 1.9e-217 759.2 501 75.0
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 3.6e-216 755.0 482 77.4
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 4.7e-216 754.6 424 84.7
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 8.0e-216 753.8 486 76.1
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 3.0e-215 751.9 491 76.0
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 6.8e-215 750.7 533 73.4
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 1.2e-214 750.0 490 75.9
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 4.4e-214 748.0 491 75.2
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 4.4e-214 748.0 437 81.7
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 2.8e-213 745.3 429 81.6
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 3.7e-213 745.0 492 74.6
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 4.9e-213 744.6 482 75.7
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 6.3e-213 744.2 487 74.5
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 6.3e-213 744.2 487 74.9
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 1.1e-212 743.4 496 74.2
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 1.4e-212 743.0 492 76.4
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 1.4e-212 743.0 487 74.7
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 1.8e-212 742.7 430 82.1
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 9.2e-212 740.3 422 83.2
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 9.2e-212 740.3 491 74.7
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 2.0e-211 739.2 444 78.6
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 2.7e-211 738.8 487 75.2
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 1.3e-210 736.5 426 80.5
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 1.7e-210 736.1 426 80.5
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 3.8e-210 734.9 488 73.6
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 5.0e-210 734.6 530 69.2
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 8.6e-210 733.8 425 80.2
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 1.1e-209 733.4 437 80.3
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.1e-209 733.4 489 74.6
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 1.9e-209 732.6 492 74.4
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 4.3e-209 731.5 489 73.6
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 1.2e-208 729.9 491 74.5
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 2.1e-208 729.2 490 72.2
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 2.8e-208 728.8 443 77.9
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 2.8e-208 728.8 484 75.8
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 2.8e-208 728.8 424 80.4
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 4.7e-208 728.0 487 71.7
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 6.1e-208 727.6 484 74.2
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 8.0e-208 727.2 426 81.2
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 5.2e-207 724.5 494 75.3
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 1.2e-206 723.4 488 74.0
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 2.6e-206 722.2 484 72.7
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 2.6e-206 722.2 484 72.3
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 2.6e-206 722.2 482 75.5
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 4.4e-206 721.5 523 69.8
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 7.5e-206 720.7 486 72.6
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 1.3e-205 719.9 494 70.6
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 1.7e-205 719.5 489 73.0
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 2.9e-205 718.8 487 71.9
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 3.7e-205 718.4 494 71.9
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 3.7e-205 718.4 456 78.3
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 6.4e-205 717.6 454 75.6
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 8.3e-205 717.2 456 78.1
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 8.3e-205 717.2 433 79.4
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 1.8e-204 716.1 489 71.0
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 2.4e-204 715.7 426 79.8
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 2.4e-204 715.7 443 77.0
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 5.4e-204 714.5 488 70.9
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 5.4e-204 714.5 488 70.9
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 7.0e-204 714.1 484 71.5
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 9.2e-204 713.8 428 80.1
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 9.2e-204 713.8 489 74.0
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 2.0e-203 712.6 489 70.8
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 2.0e-203 712.6 489 70.8
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 7.3e-201 704.1 466 76.6
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 9.5e-201 703.7 445 77.3
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.1e-199 700.3 403 82.4
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 8.9e-199 697.2 401 82.0
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 8.3e-197 690.6 435 76.1
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.6e-195 686.4 378 86.8
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.0e-194 683.7 452 72.1
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 3.9e-194 681.8 490 68.8
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.9e-193 679.5 413 78.9
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 4.0e-191 671.8 548 66.6
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 8.3e-189 664.1 446 76.0
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 1.7e-186 656.4 437 72.3
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 3.9e-186 655.2 484 70.5
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 5.2e-183 644.8 411 75.2
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 7.1e-180 634.4 427 73.8
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 1.3e-178 630.2 378 78.8
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 1.8e-175 619.8 437 67.0
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 2.4e-175 619.4 341 86.8
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 7.6e-174 614.4 439 66.7
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 8.4e-173 610.9 394 74.4
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 7.1e-172 607.8 472 63.8
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 1.0e-170 604.0 390 74.6
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 5.1e-170 601.7 494 62.8
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.2e-165 586.3 378 75.1
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 8.4e-165 584.3 440 62.3
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 1.1e-159 567.4 407 67.6
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 1.1e-153 547.4 377 71.6
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 6.2e-152 541.6 443 60.7
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 1.4e-151 540.4 326 80.7
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 8.7e-146 521.2 481 53.8
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.2e-126 457.6 256 85.2
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 2.0e-121 440.3 320 67.2
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 2.0e-121 440.3 320 67.2
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 5.9e-118 428.7 348 62.9
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 5.0e-117 425.6 391 55.2
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 7.7e-110 401.7 295 66.4
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 5.2e-106 389.0 270 70.7
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 1.5e-105 387.5 308 62.7
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 3.4e-105 386.3 264 70.8
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 4.8e-104 382.5 294 65.6
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 4.4e-89 332.8 386 45.6
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.2e-88 330.5 208 75.0
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 1.6e-78 297.7 333 45.9
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.5e-78 296.6 238 67.6
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 2.0e-73 280.8 250 57.2
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 1.2e-67 261.5 567 31.9
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 3.9e-53 213.4 464 32.3
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 2.9e-48 197.2 110 83.6
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 4.0e-42 176.8 112 74.1
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 7.9e-38 162.5 106 75.5
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 5.5e-31 139.8 79 84.8
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 2.7e-30 137.5 82 72.0
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 5.5e-23 113.2 74 74.3
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 3.9e-21 107.1 89 58.4
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 3.9e-21 107.1 106 53.8
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 8.8e-21 105.9 69 71.0
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 1.5e-20 105.1 89 58.4
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 2.5e-20 104.4 88 59.1
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 2.5e-20 104.4 89 58.4
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 2.5e-20 104.4 60 73.3
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 5.7e-20 103.2 69 72.5
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 1.3e-19 102.1 89 56.2
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 1.7e-19 101.7 70 68.6
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 2.2e-19 101.3 88 56.8
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 4.8e-19 100.1 69 68.1
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 2.2e-16 91.3 53 71.7
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.6e-14 84.0 69 65.2
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 3.6e-14 84.0 52 76.9
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 9.1e-10 69.3 85 47.1
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 1.5e-09 68.6 46 73.9
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 5.9e-09 66.6 41 78.0


User provided reference genes

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