Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01032460001 Vitis vinifera HOM05D000458 ORTHO05D036837 2.5e-56 221.9 110 100.0
MD17G1033700 Malus domestica HOM05D000458 ORTHO05D000951 3.8e-12 75.1 62 67.7
Dinv35075 Davidia involucrata HOM05D000458 ORTHO05D000951 5.4e-11 71.2 54 68.5
TAR629G1861 Trochodendron aralioides HOM05D000458 ORTHO05D000951 7.1e-11 70.9 50 72.0
QL02p076094 Quercus lobata HOM05D000458 ORTHO05D000951 9.3e-11 70.5 51 66.7
Medtr6g006770 Medicago truncatula HOM05D000458 ORTHO05D000951 1.2e-10 70.1 54 70.4
CSS0042136 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D000951 1.6e-10 69.7 54 66.7
RcHm_v2.0_Chr2g0172211 Rosa chinensis HOM05D000458 ORTHO05D000951 1.6e-10 69.7 51 70.6
Prupe.3G286000 Prunus persica HOM05D000458 ORTHO05D000951 2.1e-10 69.3 59 61.0
CSS0049522 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D000951 2.7e-10 68.9 55 65.5
Actinidia36093 Actinidia chinensis HOM05D000458 ORTHO05D000951 4.6e-10 68.2 54 64.8
Ciclev10014466m.g Citrus clementina HOM05D000458 ORTHO05D000951 4.6e-10 68.2 62 58.1
Gohir.D11G071000 Gossypium hirsutum HOM05D000458 ORTHO05D000951 4.6e-10 68.2 72 54.2
TWI56G0660 Tripterygium wilfordii HOM05D000458 ORTHO05D000951 4.6e-10 68.2 51 70.6
Gorai.007G076300 Gossypium raimondii HOM05D000458 ORTHO05D000951 7.8e-10 67.4 72 52.8
Gohir.A11G067100 Gossypium hirsutum HOM05D000458 ORTHO05D000951 1.0e-09 67.0 72 54.2
Hma1.2p1_0858F.1_g229320 Hydrangea macrophylla HOM05D000458 ORTHO05D000951 1.0e-09 67.0 54 61.1
Cfa007419 Carpinus fangiana HOM05D000458 ORTHO05D000951 1.3e-09 66.6 55 61.8
Actinidia06016 Actinidia chinensis HOM05D000458 ORTHO05D000951 1.7e-09 66.2 54 64.8
Glyma.05G006700 Glycine max HOM05D000458 ORTHO05D000951 1.7e-09 66.2 54 63.0
Rhsim10G0020800 Rhododendron simsii HOM05D000458 ORTHO05D000951 1.7e-09 66.2 49 71.4
Cpa.g.c30698.1 Carica papaya HOM05D000458 ORTHO05D119898 2.3e-09 65.9 55 63.6
Ca_04187_v3 Cicer arietinum L. HOM05D000458 ORTHO05D000951 2.3e-09 65.9 54 63.0
vmacro05836 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 2.3e-09 65.9 50 70.0
arahy.Tifrunner.gnm1.ann1.74U9H7 Arachis hypogaea HOM05D000458 ORTHO05D000951 3.0e-09 65.5 55 60.0
arahy.Tifrunner.gnm1.ann1.RX1SGL Arachis hypogaea HOM05D000458 ORTHO05D000951 3.0e-09 65.5 55 60.0
Duzib187G1331 Durio zibethinus HOM05D000458 ORTHO05D000951 3.0e-09 65.5 49 69.4
Lalb_Chr02g0160381 Lupinus albus HOM05D000458 ORTHO05D000951 3.0e-09 65.5 58 56.9
Nn4g22765 Nelumbo nucifera HOM05D000458 ORTHO05D000951 3.0e-09 65.5 47 74.5
Lj2g0003183 Lotus japonicus HOM05D000458 ORTHO05D000951 3.9e-09 65.1 51 62.7
MD09G1031900 Malus domestica HOM05D000458 ORTHO05D000951 3.9e-09 65.1 62 58.1
Atru.chr6.2313 Acer truncatum HOM05D000458 ORTHO05D000951 5.1e-09 64.7 51 66.7
Potri.001G349300 Populus trichocarpa HOM05D000458 ORTHO05D000951 5.1e-09 64.7 51 66.7
MELO3C021549.2 Cucumis melo HOM05D000458 ORTHO05D000951 6.6e-09 64.3 51 62.7
Thecc.04G011000 Theobroma cacao HOM05D000458 ORTHO05D000951 6.6e-09 64.3 50 68.0
Gorai.006G030400 Gossypium raimondii HOM05D000458 ORTHO05D000951 8.7e-09 63.9 51 70.6
Psat1g057560 Pisum sativum HOM05D000458 ORTHO05D000951 8.7e-09 63.9 54 61.1
Eucgr.I01786 Eucalyptus grandis HOM05D000458 ORTHO05D000951 1.5e-08 63.2 57 56.1
Gohir.A09G026700 Gossypium hirsutum HOM05D000458 ORTHO05D000951 1.5e-08 63.2 51 68.6
CANSAT64G0576 Cannabis sativa HOM05D000458 ORTHO05D000951 1.9e-08 62.8 44 68.2
CsaV3_5G027350 Cucumis sativus L. HOM05D000458 ORTHO05D000951 1.9e-08 62.8 51 60.8
VMungo0464G1914 Vigna mungo HOM05D000458 ORTHO05D000951 1.9e-08 62.8 55 60.0
Phvul.004G012600 Phaseolus vulgaris HOM05D000458 ORTHO05D000951 2.5e-08 62.4 55 60.0
Cc07_g02130 Coffea canephora HOM05D000458 ORTHO05D000951 3.3e-08 62.0 48 66.7
Dinv33482 Davidia involucrata HOM05D000458 ORTHO05D000951 3.3e-08 62.0 51 64.7
Manes.17G116100 Manihot esculenta HOM05D000458 ORTHO05D000951 3.3e-08 62.0 51 62.7
TPR.G2279 Trifolium pratense HOM05D000458 ORTHO05D000951 3.3e-08 62.0 54 61.1
CAN.G206.23 Capsicum annuum HOM05D000458 ORTHO05D000951 4.3e-08 61.6 45 71.1
Duzib147G1225 Durio zibethinus HOM05D000458 ORTHO05D000951 4.3e-08 61.6 50 64.0
Solyc02g086790.4 Solanum lycopersicum HOM05D000458 ORTHO05D000951 4.3e-08 61.6 45 71.1
Lj7C593T4 Lonicera japonica HOM05D000458 ORTHO05D000951 5.6e-08 61.2 50 62.0
Sopen02g031560 Solanum pennellii HOM05D000458 ORTHO05D000951 5.6e-08 61.2 45 71.1
PSO063G1715 Papaver somniferum HOM05D000458 ORTHO05D000951 9.6e-08 60.5 47 61.7
CiPaw.03G039100 Carya illinoinensis HOM05D000458 ORTHO05D000951 1.3e-07 60.1 54 59.3
CiPaw.04G025600 Carya illinoinensis HOM05D000458 ORTHO05D000951 1.3e-07 60.1 61 54.1
DCAR_011231 Daucus carota HOM05D000458 ORTHO05D000951 1.3e-07 60.1 50 64.0
CDE06G1484 Ceratophyllum demersum HOM05D000458 ORTHO05D000951 1.6e-07 59.7 54 63.0
CARHR198590 Cardamine hirsuta HOM05D000458 ORTHO05D000951 2.1e-07 59.3 70 44.3
unitig_746.g26553 Utricularia gibba HOM05D000458 ORTHO05D000951 2.1e-07 59.3 47 68.1
Aqoxy3G02943 Aquilegia oxysepala HOM05D000458 ORTHO05D000951 3.6e-07 58.5 42 69.0
Oeu043047.2 Olea europaea HOM05D000458 ORTHO05D000951 3.6e-07 58.5 47 61.7
Psat1g114600 Pisum sativum HOM05D000458 ORTHO05D036837 4.8e-07 58.2 54 57.4
Sc03g0007960 Simmondsia chinensis HOM05D000458 ORTHO05D000951 4.8e-07 58.2 50 62.0
Ah.04g163470 Amaranthus hybridus HOM05D000458 ORTHO05D000951 8.1e-07 57.4 51 58.8
Peaxi162Scf00129g01232 Petunia axillaris HOM05D000458 ORTHO05D000951 8.1e-07 57.4 47 61.7
SGA_v2.0_scaffold135G34882 Striga asiatica HOM05D000458 ORTHO05D000951 8.1e-07 57.4 45 62.2
ClCG09G019000 Citrullus lanatus HOM05D000458 ORTHO05D000951 1.1e-06 57.0 46 63.0
Migut.K01373 Erythranthe guttata HOM05D000458 ORTHO05D000951 1.1e-06 57.0 42 71.4
Glyma.19G007300 Glycine max HOM05D000458 ORTHO05D000951 1.1e-06 57.0 54 55.6
PSO832G3510 Papaver somniferum HOM05D000458 ORTHO05D000951 1.1e-06 57.0 47 59.6
Sed0014717 Sechium edule HOM05D000458 ORTHO05D000951 1.1e-06 57.0 44 65.9
Thhalv10012878m.g Eutrema salsugineum HOM05D000458 ORTHO05D000951 1.4e-06 56.6 65 44.6
SalBow1G4495 Salvia bowleyana HOM05D000458 ORTHO05D000951 1.8e-06 56.2 55 52.7
AT5G14720 Arabidopsis thaliana HOM05D000458 ORTHO05D000951 2.4e-06 55.8 64 45.3
COL.COLO4_28990 Corchorus olitorius HOM05D000458 ORTHO05D000951 2.4e-06 55.8 56 57.1
ECA232G3438 Erigeron canadensis HOM05D000458 ORTHO05D000951 2.4e-06 55.8 53 52.8
Lalb_Chr06g0175981 Lupinus albus HOM05D000458 ORTHO05D000951 2.4e-06 55.8 54 57.4
PGR142G0583 Punica granatum HOM05D000458 ORTHO05D000951 2.4e-06 55.8 51 52.9
AL6G25490 Arabidopsis lyrata HOM05D000458 ORTHO05D000951 3.1e-06 55.5 64 45.3
Migut.H00109 Erythranthe guttata HOM05D000458 ORTHO05D000951 3.1e-06 55.5 50 58.0
Nn1g08921 Nelumbo nucifera HOM05D000458 ORTHO05D036837 4.0e-06 55.1 39 76.9
FAN05G1845 Fragaria x ananassa HOM05D000458 ORTHO05D000951 5.3e-06 54.7 51 60.8
FAN05G2669 Fragaria x ananassa HOM05D000458 ORTHO05D000951 5.3e-06 54.7 51 60.8
FAN09G1517 Fragaria x ananassa HOM05D000458 ORTHO05D000951 5.3e-06 54.7 51 60.8
Carub.0006s1289 Capsella rubella HOM05D000458 ORTHO05D000951 9.0e-06 53.9 64 43.8
Nn3g16864 Nelumbo nucifera HOM05D000458 ORTHO05D000951 9.0e-06 53.9 45 62.2


User provided reference genes

Program Settings