Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 3112.0 1592 100.0
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2144.0 1864 62.7
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 2049.6 1864 59.5
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 2036.5 1860 59.4
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1985.3 1850 58.4
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1955.6 1864 57.6
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1939.9 1857 56.7
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1932.1 1860 57.0
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1924.4 1944 55.4
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1902.9 1859 56.6
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1890.2 1861 55.7
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1886.3 1860 56.2
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1885.9 1591 62.5
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1871.3 1858 55.3
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1859.3 1859 55.3
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1856.6 1856 55.3
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1842.4 1860 55.1
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1842.4 1861 54.9
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1831.6 1700 59.1
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1827.4 1862 54.7
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1823.1 1971 53.4
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1785.8 1993 52.1
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1783.8 2004 51.3
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1780.4 1860 53.0
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1773.4 2045 50.5
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1771.5 1863 52.4
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1771.5 1862 52.5
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1759.2 1860 51.7
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1749.9 1796 54.6
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1741.1 1796 54.6
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1735.7 1796 54.6
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1732.6 1858 51.5
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1723.4 1853 51.1
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1714.5 1853 51.9
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1709.9 1853 51.8
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1700.6 1861 50.6
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1700.6 1859 50.2
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1695.2 1862 50.6
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1694.1 1875 51.3
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1687.9 1873 51.3
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1672.1 1867 50.8
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1670.2 1711 54.2
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1668.7 1894 49.6
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1664.4 1844 51.6
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1661.0 1875 49.7
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1643.2 1861 49.9
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1639.4 1855 49.8
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1638.2 1866 50.4
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1615.9 1857 49.2
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1609.7 1864 49.3
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1608.2 1865 49.0
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1604.0 1844 49.5
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1565.8 1508 57.4
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1564.7 1872 48.1
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1540.0 1728 49.5
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1537.7 1865 47.8
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1515.7 1861 46.6
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1502.6 1458 56.9
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1500.7 1860 47.0
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1499.6 1860 46.8
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1491.5 1860 47.0
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1491.5 1860 47.0
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1491.5 1860 47.0
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1489.9 1858 46.9
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1488.0 1858 46.7
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1486.5 1512 54.5
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1484.5 1861 46.2
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1478.4 1859 46.4
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1459.9 1857 45.7
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1447.2 1646 50.7
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1428.7 1854 45.5
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1423.3 1965 43.3
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1418.3 1837 45.8
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1414.1 1863 45.1
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1410.6 1886 44.9
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1406.3 1912 44.1
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1330.5 1997 41.5
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1321.2 1887 44.0
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1314.3 1701 46.0
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1305.8 1865 41.9
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1261.1 1078 63.5
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1219.1 1069 59.0
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1171.0 1365 48.9
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 0.0e+00 1162.9 970 63.4
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1108.2 1903 38.9
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1095.9 1846 37.7
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1083.9 1329 48.2
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 1.0e-307 1060.8 1282 48.8
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 4.0e-304 1048.9 1223 48.7
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 9.1e-301 1037.7 1845 37.0
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 5.2e-264 915.6 942 55.8
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 7.8e-252 875.2 942 51.7
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 1.1e-242 844.7 729 60.9
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 2.2e-222 777.3 849 51.7
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 1.5e-194 684.9 1937 28.8
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 2.0e-194 684.5 476 72.3
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 5.3e-192 676.4 1038 40.7
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.2e-188 665.2 533 64.7
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.3e-185 655.2 589 60.8
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 2.4e-184 651.0 538 63.2
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.6e-180 638.3 547 62.2
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 4.0e-155 553.9 886 42.2
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 2.7e-135 488.0 436 58.9
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 3.5e-135 487.6 633 45.7
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 5.6e-133 480.3 472 56.4
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.4e-131 475.7 545 47.7
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 3.1e-131 474.6 456 57.0
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 4.9e-129 467.2 1827 26.0
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.1e-126 457.2 371 63.3
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 5.5e-120 437.2 431 54.1
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 2.7e-119 434.9 547 47.3
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.1e-108 398.7 384 55.2
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 4.8e-108 397.5 346 59.8
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 3.4e-106 391.3 400 56.5
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.2e-103 382.9 337 57.6
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 5.3e-91 340.9 546 40.7
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.2e-90 339.7 611 37.5
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 6.1e-87 327.4 615 35.1
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.8e-84 318.5 231 69.3
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.2e-82 313.2 443 39.3
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 8.0e-79 300.4 269 53.9
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 1.2e-77 296.6 339 46.0
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 3.6e-71 275.0 276 52.2
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 3.7e-68 265.0 211 63.0
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 5.4e-67 261.2 268 54.1
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.0e-65 256.9 226 62.4
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 2.8e-60 238.8 194 62.4
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.7e-57 229.6 159 70.4
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.3e-57 229.2 211 59.7
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.0e-57 228.0 191 57.1
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 1.2e-53 216.9 151 72.2
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 7.5e-53 214.2 282 47.9
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 3.2e-51 208.8 148 73.6
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 3.0e-49 202.2 143 69.2
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 5.8e-45 188.0 217 51.6
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 1.7e-44 186.4 160 61.9
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-43 183.7 177 55.9
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.4e-43 182.6 198 52.5
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 1.6e-42 179.9 880 25.9
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 2.7e-42 179.1 176 57.4
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 7.8e-42 177.6 179 57.0
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 1.5e-37 163.3 157 54.1
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.3e-36 160.2 226 45.1
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 1.6e-34 153.3 644 24.8
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.1e-34 152.9 138 56.5
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 6.0e-34 151.4 132 60.6
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 6.6e-33 147.9 137 59.9
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 1.6e-31 143.3 123 56.1
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.4e-30 140.2 134 56.0
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 4.0e-30 138.7 132 53.8
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 1.3e-25 123.6 103 59.2
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.0e-25 122.5 106 58.5
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 2.8e-23 115.9 216 35.2
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.2e-23 114.8 110 52.7
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 1.7e-20 106.7 93 55.9
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.2e-20 106.3 75 62.7
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 3.2e-19 102.4 113 51.3
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 3.5e-18 99.0 71 64.8
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 4.3e-16 92.0 175 33.1
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 6.2e-15 88.2 53 79.2
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 9.0e-14 84.3 52 75.0
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 2.2e-12 79.7 74 51.4
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 1.4e-11 77.0 86 54.7
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 2.3e-09 69.7 146 37.0
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 5.1e-09 68.6 76 51.3
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 8.7e-09 67.8 84 47.6
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-08 67.4 51 58.8
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-08 67.4 51 58.8
TPR.G14702 Trifolium pratense HOM05D000127 ORTHO05D000243 5.6e-08 65.1 72 52.8
Hma1.2p1_0078F.1_g040220 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 1.4e-06 60.5 64 48.4
Hma1.2p1_2269F.1_g318480 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 5.3e-06 58.5 61 49.2


User provided reference genes

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