Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 2.4e-127 458.8 221 100.0
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 5.1e-117 424.5 221 90.5
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 1.1e-116 423.3 221 90.5
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 2.9e-112 408.7 221 87.3
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 4.9e-112 407.9 221 86.4
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 4.9e-112 407.9 249 79.9
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 6.4e-112 407.5 221 86.4
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.1e-111 406.8 221 87.8
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 5.4e-111 404.4 221 87.3
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 5.4e-111 404.4 221 87.3
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 1.2e-110 403.3 221 85.5
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.1e-110 402.5 221 84.2
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 3.5e-110 401.7 221 83.7
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 3.5e-110 401.7 231 84.0
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 1.7e-109 399.4 221 83.7
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 8.7e-109 397.1 221 82.8
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 5.6e-108 394.4 220 80.9
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 1.3e-107 393.3 221 83.3
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 3.6e-107 391.7 221 81.9
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 8.1e-107 390.6 221 81.0
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 1.1e-106 390.2 221 82.4
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 1.8e-106 389.4 221 83.3
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 5.3e-106 387.9 221 81.0
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 2.6e-105 385.6 221 80.1
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 2.6e-105 385.6 221 79.6
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 9.9e-105 383.6 221 82.4
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 9.9e-105 383.6 221 80.5
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 9.9e-105 383.6 221 80.5
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 9.9e-105 383.6 221 81.9
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.7e-104 382.9 221 80.5
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 1.7e-104 382.9 221 80.5
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 2.2e-104 382.5 221 79.6
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 2.2e-104 382.5 221 80.1
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 2.2e-104 382.5 221 80.1
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 2.2e-104 382.5 221 80.5
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 4.9e-104 381.3 221 78.7
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 8.4e-104 380.6 221 78.7
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 3.2e-103 378.6 221 78.7
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 4.2e-103 378.3 221 79.6
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 5.5e-103 377.9 221 78.7
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 9.3e-103 377.1 221 80.1
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 2.1e-102 375.9 238 77.3
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 2.7e-102 375.6 221 79.6
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 7.9e-102 374.0 221 80.1
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 7.9e-102 374.0 221 78.3
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 1.0e-101 373.6 221 79.2
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.0e-101 373.6 221 78.7
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.0e-101 373.6 222 78.4
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 8.7e-101 370.5 221 80.1
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.9e-100 369.4 221 76.9
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 5.6e-100 367.9 221 76.9
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 5.6e-100 367.9 214 79.9
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 2.1e-99 365.9 226 76.5
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.8e-99 365.5 221 76.0
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 2.8e-99 365.5 221 77.8
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 3.7e-99 365.2 251 69.7
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 8.1e-99 364.0 221 76.5
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 8.1e-99 364.0 221 77.4
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 2.4e-98 362.5 221 77.8
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 6.9e-98 360.9 234 74.8
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 6.9e-98 360.9 221 76.9
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 1.2e-97 360.1 221 74.7
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.5e-97 359.8 221 79.2
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 4.5e-97 358.2 221 75.1
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 4.5e-97 358.2 221 75.1
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 7.6e-97 357.5 221 74.7
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 1.0e-96 357.1 222 75.2
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.3e-96 356.7 221 74.7
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.7e-96 356.3 221 76.5
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 2.2e-96 355.9 220 74.1
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 2.2e-96 355.9 221 75.1
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 4.9e-96 354.8 221 75.6
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 6.5e-96 354.4 221 74.2
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 6.5e-96 354.4 221 76.5
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 8.4e-96 354.0 221 74.2
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 1.1e-95 353.6 221 74.2
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 1.1e-95 353.6 221 74.7
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 1.4e-95 353.2 221 74.2
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 2.5e-95 352.4 221 74.7
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 5.5e-95 351.3 221 74.7
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 1.6e-94 349.7 221 73.3
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 4.6e-94 348.2 221 74.2
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 4.6e-94 348.2 222 73.9
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.0e-93 347.1 221 72.4
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 1.1e-92 343.6 221 72.4
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 7.4e-92 340.9 221 71.5
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 3.1e-90 335.5 201 77.1
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 1.2e-89 333.6 247 65.6
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 2.7e-86 322.4 244 64.3
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 1.0e-85 320.5 221 68.3
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.3e-85 319.3 183 83.6
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 2.3e-85 319.3 183 85.2
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 8.7e-85 317.4 177 81.4
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 5.7e-84 314.7 202 75.2
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.3e-83 313.5 165 85.5
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 5.3e-82 308.1 221 67.4
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.2e-81 307.0 221 64.3
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 4.5e-81 305.1 221 67.0
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 7.7e-81 304.3 221 67.0
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 2.9e-80 302.4 221 68.8
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 3.8e-80 302.0 220 62.3
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 3.2e-79 298.9 222 63.5
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 3.2e-79 298.9 175 81.7
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 5.5e-79 298.1 201 68.2
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 1.6e-78 296.6 202 68.3
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 1.6e-78 296.6 202 68.3
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 3.6e-78 295.4 221 63.3
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 3.6e-78 295.4 221 61.5
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.0e-77 293.9 179 76.5
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 2.3e-77 292.7 183 71.6
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 6.9e-74 281.2 221 60.6
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 7.7e-73 277.7 163 79.8
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.5e-71 271.6 228 62.7
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 9.4e-63 244.2 185 64.9
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 5.7e-60 235.0 222 54.1
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 7.5e-52 208.0 116 84.5
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 2.2e-51 206.5 192 56.8
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 3.7e-51 205.7 309 39.8
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 1.2e-49 200.7 261 41.0
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 2.0e-44 183.3 113 77.0
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 4.4e-44 182.2 108 73.1
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 4.9e-43 178.7 258 40.7
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 8.3e-43 177.9 119 72.3
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 3.1e-42 176.0 107 72.0
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 9.2e-34 147.9 78 87.2
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.3e-32 144.1 115 59.1
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 1.2e-30 137.5 125 59.2
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.1e-29 132.9 283 30.7
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 6.8e-29 131.7 81 72.8
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 8.9e-29 131.3 77 77.9
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 1.2e-25 120.9 81 67.9
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 1.2e-17 94.4 77 59.7
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 4.3e-15 85.9 56 66.1
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 1.6e-09 67.4 66 50.0


User provided reference genes

Program Settings