Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01032340001 Vitis vinifera HOM05D004145 ORTHO05D004879 1.7e-44 182.2 86 100.0
GSVIVG01032326001 Vitis vinifera HOM05D004145 ORTHO05D004879 3.2e-43 177.9 86 97.7
GSVIVG01026774001 Vitis vinifera HOM05D004145 ORTHO05D004879 2.1e-42 175.3 85 94.1
Prupe.6G335900 Prunus persica HOM05D004145 ORTHO05D004879 1.1e-40 169.5 85 88.2
CSS0025723 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 1.5e-40 169.1 85 87.1
QL03p001164 Quercus lobata HOM05D004145 ORTHO05D004879 3.3e-40 167.9 85 87.1
CSS0045127 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 4.4e-40 167.5 85 85.9
Manes.09G159400 Manihot esculenta HOM05D004145 ORTHO05D004879 7.4e-40 166.8 85 87.1
Cpa.g.sc117.30 Carica papaya HOM05D004145 ORTHO05D004879 1.3e-39 166.0 84 86.9
Aqoxy2G04020 Aquilegia oxysepala HOM05D004145 ORTHO05D004879 1.7e-39 165.6 84 86.9
Ciclev10019027m.g Citrus clementina HOM05D004145 ORTHO05D004879 1.7e-39 165.6 85 84.7
Haze_04291 Corylus avellana HOM05D004145 ORTHO05D004879 2.8e-39 164.9 85 85.9
CANSAT54G2505 Cannabis sativa HOM05D004145 ORTHO05D004879 4.8e-39 164.1 85 83.5
CiPaw.13G133200 Carya illinoinensis HOM05D004145 ORTHO05D004879 4.8e-39 164.1 85 85.9
Glyma.03G243100 Glycine max HOM05D004145 ORTHO05D004879 4.8e-39 164.1 84 84.5
Lsat_1_v5_gn_6_96941 Lactuca sativa HOM05D004145 ORTHO05D004879 4.8e-39 164.1 83 86.7
SGA_v2.0_scaffold80G25752 Striga asiatica HOM05D004145 ORTHO05D004879 4.8e-39 164.1 84 86.9
vmacro06192 Vaccinium macrocarpon HOM05D004145 ORTHO05D004879 4.8e-39 164.1 85 85.9
MSTRG.2685 Avicennia marina HOM05D004145 ORTHO05D004879 6.3e-39 163.7 84 85.7
Dinv09830 Davidia involucrata HOM05D004145 ORTHO05D004879 6.3e-39 163.7 85 85.9
Gohir.A13G101100 Gossypium hirsutum HOM05D004145 ORTHO05D004879 6.3e-39 163.7 84 85.7
Gohir.D13G104600 Gossypium hirsutum HOM05D004145 ORTHO05D004879 6.3e-39 163.7 84 85.7
Gorai.013G117100 Gossypium raimondii HOM05D004145 ORTHO05D004879 6.3e-39 163.7 84 85.7
Lj5g0001865 Lotus japonicus HOM05D004145 ORTHO05D004879 6.3e-39 163.7 84 84.5
Phvul.006G097200 Phaseolus vulgaris HOM05D004145 ORTHO05D004879 6.3e-39 163.7 84 84.5
RcHm_v2.0_Chr6g0273391 Rosa chinensis HOM05D004145 ORTHO05D004879 6.3e-39 163.7 85 85.9
COL.COLO4_36032 Corchorus olitorius HOM05D004145 ORTHO05D004879 8.2e-39 163.3 84 85.7
Lj9A674T60 Lonicera japonica HOM05D004145 ORTHO05D004879 8.2e-39 163.3 84 84.5
HPP92_016926 Vanilla planifolia HOM05D004145 ORTHO05D004879 8.2e-39 163.3 85 85.9
HanXRQChr15g0469811 Helianthus annuus HOM05D004145 ORTHO05D004879 1.1e-38 162.9 83 85.5
Dinv04277 Davidia involucrata HOM05D004145 ORTHO05D004879 1.4e-38 162.5 84 86.9
FvH4_2g12670 Fragaria vesca HOM05D004145 ORTHO05D004879 1.4e-38 162.5 85 84.7
Hma1.2p1_1636F.1_g294830 Hydrangea macrophylla HOM05D004145 ORTHO05D004879 1.4e-38 162.5 84 86.9
MD00G1051200 Malus domestica HOM05D004145 ORTHO05D004879 1.4e-38 162.5 85 81.2
MD17G1228000 Malus domestica HOM05D004145 ORTHO05D004879 1.4e-38 162.5 85 81.2
Oeu028497.4 Olea europaea HOM05D004145 ORTHO05D004879 1.4e-38 162.5 84 85.7
Potri.005G045200 Populus trichocarpa HOM05D004145 ORTHO05D004879 1.4e-38 162.5 84 85.7
VMungo0540G0740 Vigna mungo HOM05D004145 ORTHO05D004879 1.4e-38 162.5 84 83.3
arahy.Tifrunner.gnm1.ann1.Q65QWU Arachis hypogaea HOM05D004145 ORTHO05D004879 1.8e-38 162.2 83 83.1
FAN15G1727 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.8e-38 162.2 85 84.7
FAN24G1676 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.8e-38 162.2 85 84.7
FAN27G3237 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.8e-38 162.2 85 84.7
Nn2g12613 Nelumbo nucifera HOM05D004145 ORTHO05D004879 1.8e-38 162.2 84 85.7
Thecc.05G254300 Theobroma cacao HOM05D004145 ORTHO05D004879 1.8e-38 162.2 84 85.7
Lalb_Chr15g0076981 Lupinus albus HOM05D004145 ORTHO05D004879 2.4e-38 161.8 84 82.1
MD12G1232500 Malus domestica HOM05D004145 ORTHO05D004879 2.4e-38 161.8 85 84.7
Glyma.19G240600 Glycine max HOM05D004145 ORTHO05D004879 3.1e-38 161.4 84 83.3
Actinidia30923 Actinidia chinensis HOM05D004145 ORTHO05D004879 4.1e-38 161.0 85 83.5
TPR.G33341 Trifolium pratense HOM05D004145 ORTHO05D004879 4.1e-38 161.0 84 84.5
Ca_12868_v3 Cicer arietinum L. HOM05D004145 ORTHO05D004879 5.3e-38 160.6 84 83.3
Haze_14654 Corylus avellana HOM05D004145 ORTHO05D004879 5.3e-38 160.6 85 83.5
Migut.H01121 Erythranthe guttata HOM05D004145 ORTHO05D004879 9.1e-38 159.8 84 83.3
Medtr7g115610 Medicago truncatula HOM05D004145 ORTHO05D004879 9.1e-38 159.8 84 82.1
Sc16g0010400 Simmondsia chinensis HOM05D004145 ORTHO05D004879 9.1e-38 159.8 84 82.1
Atru.chr2.638 Acer truncatum HOM05D004145 ORTHO05D004879 1.5e-37 159.1 84 82.1
PSO675G1731 Papaver somniferum HOM05D004145 ORTHO05D004879 1.5e-37 159.1 83 84.3
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 1.5e-37 159.1 84 82.1
RcHm_v2.0_Chr2g0129391 Rosa chinensis HOM05D004145 ORTHO05D004879 2.0e-37 158.7 85 83.5
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 2.6e-37 158.3 85 82.4
ClCG07G016490 Citrullus lanatus HOM05D004145 ORTHO05D004879 3.5e-37 157.9 84 82.1
Eucgr.H04421 Eucalyptus grandis HOM05D004145 ORTHO05D004879 3.5e-37 157.9 85 83.5
PSO017G5505 Papaver somniferum HOM05D004145 ORTHO05D004879 3.5e-37 157.9 83 83.1
ECA246G2136 Erigeron canadensis HOM05D004145 ORTHO05D004879 4.5e-37 157.5 83 84.3
Cc02_g32210 Coffea canephora HOM05D004145 ORTHO05D004879 5.9e-37 157.1 84 83.3
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 2.2e-36 155.2 84 82.1
CDE05G0178 Ceratophyllum demersum HOM05D004145 ORTHO05D004879 2.2e-36 155.2 84 79.8
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 2.9e-36 154.8 84 81.0
Thhalv10016297m.g Eutrema salsugineum HOM05D004145 ORTHO05D004879 3.8e-36 154.5 84 79.8
Sp4g17260 Schrenkiella parvula HOM05D004145 ORTHO05D004879 3.8e-36 154.5 84 79.8
Sed0004488 Sechium edule HOM05D004145 ORTHO05D004879 3.8e-36 154.5 84 79.8
TWI56G0710 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 3.8e-36 154.5 84 79.8
CsaV3_2G004470 Cucumis sativus L. HOM05D004145 ORTHO05D004879 5.0e-36 154.1 84 79.8
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 5.0e-36 154.1 84 81.0
Os02g0812400 Oryza sativa ssp. japonica HOM05D004145 ORTHO05D004879 6.5e-36 153.7 84 77.4
arahy.Tifrunner.gnm1.ann1.N9EJ2X Arachis hypogaea HOM05D004145 ORTHO05D004879 8.5e-36 153.3 95 72.6
Ah.06g195470 Amaranthus hybridus HOM05D004145 ORTHO05D004879 1.1e-35 152.9 84 78.6
Zm00001eb258570 Zea mays HOM05D004145 ORTHO05D004879 1.1e-35 152.9 84 75.0
Aa31sc654G10 Aethionema arabicum HOM05D004145 ORTHO05D004879 1.9e-35 152.1 84 78.6
MELO3C004345.2 Cucumis melo HOM05D004145 ORTHO05D004879 2.5e-35 151.8 84 78.6
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 2.5e-35 151.8 84 78.6
CARHR129130 Cardamine hirsuta HOM05D004145 ORTHO05D004879 3.2e-35 151.4 84 78.6
Hund07348 Selenicereus undatus HOM05D004145 ORTHO05D004879 3.2e-35 151.4 84 76.2
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 4.2e-35 151.0 84 81.0
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 4.2e-35 151.0 84 81.0
BcaC02g11578 Brassica carinata HOM05D004145 ORTHO05D004879 5.5e-35 150.6 84 78.6
A05p10730 Brassica napus HOM05D004145 ORTHO05D004879 5.5e-35 150.6 84 78.6
C04p13820 Brassica napus HOM05D004145 ORTHO05D004879 5.5e-35 150.6 84 78.6
BolC4t22972H Brassica oleracea HOM05D004145 ORTHO05D004879 5.5e-35 150.6 84 78.6
BraA05t20017Z Brassica rapa HOM05D004145 ORTHO05D004879 5.5e-35 150.6 84 78.6
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 7.2e-35 150.2 83 80.7
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 7.2e-35 150.2 83 80.7
AL4G30980 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 1.2e-34 149.4 84 77.4
AT2G34970 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 1.2e-34 149.4 84 77.4
Carub.0004s1666 Capsella rubella HOM05D004145 ORTHO05D004879 1.6e-34 149.1 84 77.4
SHI18260 Sapria himalayana HOM05D004145 ORTHO05D004879 3.6e-34 147.9 84 73.8
ATR0564G152 Amborella trichopoda HOM05D004145 ORTHO05D004879 4.7e-34 147.5 83 77.1
AUR62000308 Chenopodium quinoa HOM05D004145 ORTHO05D004879 4.7e-34 147.5 84 77.4
AUR62006653 Chenopodium quinoa HOM05D004145 ORTHO05D004879 8.0e-34 146.7 84 77.4
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 1.0e-33 146.4 83 78.3
BcaB02g09493 Brassica carinata HOM05D004145 ORTHO05D004879 1.4e-33 146.0 84 77.4
BcaB02g09494 Brassica carinata HOM05D004145 ORTHO05D004879 1.4e-33 146.0 84 77.4
EL10Ac4g09963 Beta vulgaris HOM05D004145 ORTHO05D004879 3.0e-33 144.8 84 78.6
DCAR_006415 Daucus carota HOM05D004145 ORTHO05D004879 3.0e-33 144.8 84 73.8
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 1.8e-30 135.6 78 75.6
PSO541G4045 Papaver somniferum HOM05D004145 ORTHO05D004879 4.1e-30 134.4 85 68.2
BcaB06g28815 Brassica carinata HOM05D004145 ORTHO05D004879 5.3e-30 134.0 70 81.4
PSO675G6749 Papaver somniferum HOM05D004145 ORTHO05D004879 4.5e-29 131.0 85 65.9
AT4G18300 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 1.0e-28 129.8 79 74.7
GSVIVG01032294001 Vitis vinifera HOM05D004145 ORTHO05D004879 1.0e-28 129.8 65 90.8
RcHm_v2.0_Chr4g0430791 Rosa chinensis HOM05D004145 ORTHO05D004879 1.3e-28 129.4 84 66.7
Mapoly0056s0115 Marchantia polymorpha HOM05D004145 ORTHO05D004879 2.9e-28 128.3 84 65.5
unitig_748.g8566 Utricularia gibba HOM05D004145 ORTHO05D004879 1.5e-27 125.9 85 68.2
AL7G36090 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 1.9e-27 125.6 79 70.9
FvH4_4g24061 Fragaria vesca HOM05D004145 ORTHO05D004879 1.9e-27 125.6 85 68.2
AT3G02270 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 4.2e-27 124.4 84 65.5
FAN07G1263 Fragaria x ananassa HOM05D000016 ORTHO05D004879 4.2e-27 124.4 85 67.1
Carub.0007s2297 Capsella rubella HOM05D004145 ORTHO05D004879 1.6e-26 122.5 74 75.7
FAN17G0778 Fragaria x ananassa HOM05D004145 ORTHO05D004879 2.1e-26 122.1 85 67.1
FvH4_4g24260 Fragaria vesca HOM05D004145 ORTHO05D004879 8.0e-26 120.2 85 67.1
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 4.0e-25 117.9 84 57.1
AL3G11540 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 6.7e-25 117.1 84 63.1
AagrBONN_evm.TU.Sc2ySwM_228.295 Anthoceros agrestis HOM05D004145 ORTHO05D004879 2.0e-24 115.5 84 58.3
ECA246G4181 Erigeron canadensis HOM05D004145 ORTHO05D004879 2.6e-24 115.2 84 63.1
Pp3c1_20030 Physcomitrium patens HOM05D004145 ORTHO05D004879 2.6e-24 115.2 83 59.0
PSO339G4752 Papaver somniferum HOM05D004145 ORTHO05D004879 8.3e-23 110.2 85 61.2
MBI12_g33070_MAGBIO Magnolia biondii HOM05D004145 ORTHO05D004879 5.0e-20 100.9 51 82.4
CBR_g23483 Chara braunii HOM05D004145 ORTHO05D004879 1.5e-19 99.4 79 55.7
Rhsim03G0245100 Rhododendron simsii HOM05D004145 ORTHO05D004879 4.2e-19 97.8 85 57.6
BolC4t27888H Brassica oleracea HOM05D004145 ORTHO05D004879 7.2e-19 97.1 58 67.2
MCO16G505 Micromonas commoda HOM05D004145 ORTHO05D004879 9.4e-19 96.7 85 45.9
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 1.8e-17 92.4 84 45.2
Lsat_1_v5_gn_3_33301 Lactuca sativa HOM05D004145 ORTHO05D004879 2.0e-16 89.0 52 71.2
CARHR178030 Cardamine hirsuta HOM05D004145 ORTHO05D004879 5.9e-13 77.4 59 61.0
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 7.7e-13 77.0 85 35.3
Psat0s2291g0040 Pisum sativum HOM05D004145 ORTHO05D004879 1.3e-12 76.3 71 53.5
SEGI_02297 Sequoiadendron giganteum HOM05D004145 ORTHO05D004879 8.6e-12 73.6 53 56.6
SEGI_16626 Sequoiadendron giganteum HOM05D004145 ORTHO05D004879 3.4e-08 61.6 37 64.9
MBI12_g33072_MAGBIO Magnolia biondii HOM05D004145 ORTHO05D004879 4.4e-08 61.2 33 78.8
FAN20G3151 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.3e-07 59.7 84 44.0
Psat0s1551g0320 Pisum sativum HOM05D004145 ORTHO05D004879 4.9e-07 57.8 32 78.1
CARHR177970 Cardamine hirsuta HOM05D004145 ORTHO05D004879 8.3e-07 57.0 41 73.2


User provided reference genes

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